BAC Information

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BAC

Clone NameB6Ng01-321L11
Chromosome3 (Build37)
Map Location 83,540,609 - 83,541,693
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091
Downstream geneSfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321L11.bB6Ng01-321L11.g
ACCGA110749GA110750
length1,0911,228
definitionB6Ng01-321L11.b B6Ng01-321L11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattttagcagctttgtgatgcttgaatgattgcattgcctatg
aagatgcttaaacaacagccgtggctgcagatgttggggtcaagctcagc
ctctacgtcaaagccattcattcccatgatcactcattcaccctacaagc
actagacatccaatagtgccaagcatgctgtggactgccgaaggcaaaaa
gcaaacacagcattggccttcctggagtttagagtggtctatgtagcgcc
gggtaaggacagtgacttattaagtctctgaaggagatggacattatgat
gagaatgtgtcacaggggatggtgaccagcagaggccactgtggctcatc
tactcaacaatagattggacacagtaatggccacaccttggaacattact
aggattataaaactgacacatgataccaagcctggggaaaggaagagagc
tataggcatggacgcaagcactttagcatcataggaagacagtgaggaca
aggtgtaaagtgtccctgcaggaaagaaaggaggggatgttagagacctt
gtaagaaggatgatttaagactcttcaatgatgcataacagctcctcggg
ccacctgcggaacagaaagcacttcttaatagcacagtctttctcaatgg
cgtgatttagtgcctggtgggacatttggcagtgtctagagacatttttt
gttgtcataacctgggacgaagggtggaagggcaagggtctcgtgtcatt
agtgggcaaaagatcaccatgcagctaaacatcttaactgcacacaaccc
tggggttgggaaagtcccacctacagaggagttggtcaacgagacttccc
ttgccgttcactggtgcttgtctgaaaaccaatgccaggataggaaaagt
agttctcagagctgatgctcttccctctcagaagttgcccaggtctctgt
gggaaaagatgtttaaggagcaaagggagagtcttggagagacagcgaca
gctcagaaccctaacaacacttgtatttctgcagaggagccagggttcta
ttgccagcacccacaccagagggcgccacaaccaatctgta
gaattcattctctcagagcaattcgggaatgccatgtgacatcttcacac
acagaggattaggtcagaagaaaagaatcaggaggtaggcacggcttgag
agtgagcagtcacagtgcccataggactcttctacagctggtacgtgtcg
aatgacttaatgagccttcagctttagatggtgtggaaatgcctccacat
aaacattccagtttttttctgtagattacatgggacatggaacactttaa
catgggcgttgggttctgagcatagttaaggtaaaccaggctgagctatg
gtgttcagcaggctaaggcattaatgcagtgtttacttgctattttcatt
gtgtgacaggtatgtcggggtatgccacggactggcctcaatccacggga
gaatcagggtcccggtacaggtgggcaggaagttggcaaaaaaatgacaa
actcgaactcaagggagtattgatctgaatgtaatttctcaaagcgagca
tcagacttatatattacagaagaaaacaaagaaattaggtgacacatcag
ccaaggtacaatgaagttatctgacacaaaacatagaaatgtgtacaaaa
agactggcaggaaccaggcaaagtttacaactgagataagatcagccagc
cctatctaaagtcagttattcacaggagccaggtgaaaggtctgatgcaa
tgctagtctattgtataacccaccaccaggggtcccttagtaaataccta
agtatgctattcctcagggcctagtgaaaaacatgcatcaggggagttct
gttctactaaccctttctagttcctctttaaaccacaacccaccttcttt
ctactattatgtaatgtaggctgccattcatgtctgtaatgagaattcta
aatatacttttgctaagcttgccctgagatttctagctcctatctagtta
aatactgcaagaaagcatgcaagacccttcacactattgcaggataaatt
tggagcatttgtgctatggaatgccaagtttccagcggctaagtttccat
gaacatatcacctggggactgcgtcagcttttggctgcgagtagtcttta
ctggagtaaggtgtggcagggtacaccctactgccaatcaagaatgaggt
acttaatgacctcaccgagattggtattcagaatggtggtacactcctcc
acaagtggcagtgatacatcatccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83540609_83541693
seq2: B6Ng01-321L11.b_48_1138

seq1  GAATTCCATTTTAGCAGCTTTGTGATGCTTGAATGATTGCATTGCCTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTAGCAGCTTTGTGATGCTTGAATGATTGCATTGCCTATG  50

seq1  AAGATGCTTAAACAACAGCCGTGGCTGCAGATGTTGGGGTCAAGCTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCTTAAACAACAGCCGTGGCTGCAGATGTTGGGGTCAAGCTCAGC  100

seq1  CTCTACGTCAAAGCCATTCATTCCCATGATCACTCATTCACCCTACAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACGTCAAAGCCATTCATTCCCATGATCACTCATTCACCCTACAAGC  150

seq1  ACTAGACATCCAATAGTGCCAAGCATGCTGTGGACTGCCGAAGGCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGACATCCAATAGTGCCAAGCATGCTGTGGACTGCCGAAGGCAAAAA  200

seq1  GCAAACACAGCATTGGCCTTCCTGGAGTTTAGAGTGGTCTATGTAGCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACACAGCATTGGCCTTCCTGGAGTTTAGAGTGGTCTATGTAGCGCC  250

seq1  GGGTAAGGACAGTGACTTATTAAGTCTCTGAAGGAGATGGACATTATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGACAGTGACTTATTAAGTCTCTGAAGGAGATGGACATTATGAT  300

seq1  GAGAATGTGTCACAGGGGATGGTGACCAGCAGAGGCCACTGTGGCTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTGTCACAGGGGATGGTGACCAGCAGAGGCCACTGTGGCTCATC  350

seq1  TACTCAACAATAGATTGGACACAGTAATGGCCACACCTTGGAACATTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAACAATAGATTGGACACAGTAATGGCCACACCTTGGAACATTACT  400

seq1  AGGATTATAAAACTGACACATGATACCAAGCCTGGGGAAAGGAAGAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTATAAAACTGACACATGATACCAAGCCTGGGGAAAGGAAGAGAGC  450

seq1  TATAGGCATGGACGCAAGCACTTTAGCATCATAGGAAGACAGTGAGGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCATGGACGCAAGCACTTTAGCATCATAGGAAGACAGTGAGGACA  500

seq1  AGGTGTAAAGTGTCCCTGCAGGAAAGAAAGGAGGGGATGTTAGAGACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTAAAGTGTCCCTGCAGGAAAGAAAGGAGGGGATGTTAGAGACCTT  550

seq1  GTAAGAAGGATGATTTAAGACTCTTCAATGATGCATAACAGCTCCTCGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGGATGATTTAAGACTCTTCAATGATGCATAACAGCTCCTCGGG  600

seq1  CCACCTGCGGAACAGAAAGCACTTCTTAATAGCACAGTCTTTCTCAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCGGAACAGAAAGCACTTCTTAATAGCACAGTCTTTCTCAATGG  650

seq1  CGTGATTTAGTGCCTGGTGGGACATTTGGCAGTGTCTAGAGACATTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTTAGTGCCTGGTGGGACATTTGGCAGTGTCTAGAGACATTTTTT  700

seq1  GTTGTCATAACCTGGGACGAAGGGTGGAAGGGCAAGGGTCTCGTGTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATAACCTGGGACGAAGGGTGGAAGGGCAAGGGTCTCGTGTCATT  750

seq1  AGTGGGCAAAAGATCACCATGCAGCTAAACATCTTAACTGCACACAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCAAAAGATCACCATGCAGCTAAACATCTTAACTGCACACAACCC  800

seq1  TGGGGTTGGGAAAGTCCCACCTACAGAGGAGTTGGTCAACGAGACTTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGGGAAAGTCCCACCTACAGAGGAGTTGGTCAACGAGACTTCCC  850

seq1  TTGCCGTTCACTGGTGCTTGTCTGAAAACCAATGCCAGGATAGGAAAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCGTTCACTGGTGCTTGTCTGAAAACCAATGCCAGGATAGGAAAAGT  900

seq1  AGTTCTCAGAGCTGAATGCTCTTCCCTCTCAGAAGTTGCCCAGGTCTCTG  950
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGAGCTG-ATGCTCTTCCCTCTCAGAAGTTGCCCAGGTCTCTG  949

seq1  T-GGAAAAGATGTTTAAGGAGCAAAGGGAGAGTC-TGGAGAGACAGCGAC  998
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGGGAAAAGATGTTTAAGGAGCAAAGGGAGAGTCTTGGAGAGACAGCGAC  999

seq1  AGCTCAGAA-CCTAACAACACTTGTTATTCTTGCAGAGGAGCCA-GGTTC  1046
      ||||||||| |||||||||||||| ||||  ||||||||||||| |||||
seq2  AGCTCAGAACCCTAACAACACTTG-TATTTCTGCAGAGGAGCCAGGGTTC  1048

seq1  TATTGCCAGCACCCACA-CAGA-GGCG-CACAACC-ATCTGTA  1085
      ||||||||||||||||| |||| |||| ||||||| |||||||
seq2  TATTGCCAGCACCCACACCAGAGGGCGCCACAACCAATCTGTA  1091