BAC Information

Click to search

BAC

Clone NameB6Ng01-321N02
Chromosome3 (Build37)
Map Location 52,846,761 - 52,847,553
singlet/doubletsinglet
Overlap geneLhfp
Upstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832, Cog6
Downstream geneLOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321N02.bB6Ng01-321N02.g
ACCGA110827GA110828
length7991,199
definitionB6Ng01-321N02.b B6Ng01-321N02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactggcttggcaaatagaagccattcgtttctttaagtaaatag
ctgtcagagttaatttgggagcatttttacaggagataaagacgtggaaa
agctttgagctagtttggcaaaacttgtatagagatgcgtatggagagaa
ttagttcttcccacttttgaagcgttgaaggaagtttgaagtttcctaaa
tgaaaaccgtggagcttcttgagacgtgtaaatatgctagacatacttag
ctttccttgtttcctattccattttaccaggggccaccagccatcttcac
tccaaagtatgagaagctgatcgcggtaatactgaaactctgttacggca
agtagctacatacgccttgaagagcggtggactacctgggagtttcttgt
gactacacgccttccttcacacctttagtgcaatcacagcggaccctcat
tgcactgcctgttggaagatggcgtccagcctgacttgtactggggtgat
ctgggctttgctttccttcctttccgctgccacctcctgtgtggggttct
tcatgccatactggctctgggggtctcagctaggcaagcctgtatccttt
ggcactttccggaggtgctcctatcctgttcacgatgagagtcggcagat
gatggtgatggtggaggagtgtgggcgctatgcctccttccagggcatcc
cccagcaccgagtggaggatctgtaccatagtgacaggcccttggctgcg
gactgttggctccgggtggcttctcacttgcccttgatgggttgctgcg
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcaaaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaaccct
atagtggaacaacattatgagctaccagtaccccggagctctgacctcta
gctgcatatatatcaaaagaatggcctagtcgcatcactgggaaagaaga
ggcccattgaacttggcaactttaatatggccattacagggatcaggcca
aaagggcagtggctggcaagggaatggctgcgtgccctcgtccatgctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52846761_52847553
seq2: B6Ng01-321N02.b_46_844

seq1  GAATTCACTGGCTTGGCAAATAGAAGCCATTCGTTTCTTTAAGTAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGCTTGGCAAATAGAAGCCATTCGTTTCTTTAAGTAAATAG  50

seq1  CTGTCAGAGTTAATTTGGGAGCATTTTTACAGGAGATAAAGACGTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAGTTAATTTGGGAGCATTTTTACAGGAGATAAAGACGTGGAAA  100

seq1  AGCTTTGAGCTAGTTTGGCAAAACTTGTATAGAGATGCGTATGGAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAGCTAGTTTGGCAAAACTTGTATAGAGATGCGTATGGAGAGAA  150

seq1  TTAGTTCTTCCCACTTTTGAAGCGTTGAAGGAAGTTTGAAGTTTCCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTCTTCCCACTTTTGAAGCGTTGAAGGAAGTTTGAAGTTTCCTAAA  200

seq1  TGAAAACCGTGGAGCTTCTTGAGACGTGTAAATATGCTAGACATACTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACCGTGGAGCTTCTTGAGACGTGTAAATATGCTAGACATACTTAG  250

seq1  CTTTCCTTGTTTCCTATTCCATTTTACCAGGGGCCACCAGCCATCTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTGTTTCCTATTCCATTTTACCAGGGGCCACCAGCCATCTTCAC  300

seq1  TCCAAAGTATGAGAAGCTGATCGCGGTAATACTGAAACTCTGTTACGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGTATGAGAAGCTGATCGCGGTAATACTGAAACTCTGTTACGGCA  350

seq1  AGTAGCTACATACGCCTTGAAGAGCGGTGGACTACCTGGGAGTTTCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTACATACGCCTTGAAGAGCGGTGGACTACCTGGGAGTTTCTTGT  400

seq1  GACTACACGCCTTCCTTCACACCTTTAGTGCAATCACAGCGGACCCTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACGCCTTCCTTCACACCTTTAGTGCAATCACAGCGGACCCTCAT  450

seq1  TGCACTGCCTGTTGGAAGATGGCGTCCAGCCTGACTTGTACTGGGGTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGCCTGTTGGAAGATGGCGTCCAGCCTGACTTGTACTGGGGTGAT  500

seq1  CTGGGCTTTGCTTTCCTTCCTTTCCGCTGCCACCTCCTGTGTGGGGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTTGCTTTCCTTCCTTTCCGCTGCCACCTCCTGTGTGGGGTTCT  550

seq1  TCATGCCATACTGGCTCTGGGGGTCTCAGCTAGGCAAGCCTGTATCCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCATACTGGCTCTGGGGGTCTCAGCTAGGCAAGCCTGTATCCTTT  600

seq1  GGCACTTTCCGGAGGTGCTCCTATCCTGTTCACGATGAGAGTCGGCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTCCGGAGGTGCTCCTATCCTGTTCACGATGAGAGTCGGCAGAT  650

seq1  GATGGTGATGGTGGAGGAGTGTGGGCGCTATGCCTCCTTCCAGGGCAT-C  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATGGTGATGGTGGAGGAGTGTGGGCGCTATGCCTCCTTCCAGGGCATCC  700

seq1  CCCAGCACCGAGTGGAGGATCTGTACCATAGTGACAGG-CCTTGGCTGCG  748
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCAGCACCGAGTGGAGGATCTGTACCATAGTGACAGGCCCTTGGCTGCG  750

seq1  GCCTGTT-GCTCCTGGTGGC-TCTCAC-TGCCC-TGATGGGTTGCTGCG  793
      | ||||| ||||| |||||| |||||| ||||| |||||||||||||||
seq2  GACTGTTGGCTCCGGGTGGCTTCTCACTTGCCCTTGATGGGTTGCTGCG  799