BAC Information

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BAC

Clone NameB6Ng01-322D09
Chromosome3 (Build37)
Map Location 56,039,826 - 56,185,406
singlet/doubletdoublet
Overlap genenone
Upstream geneDclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322D09.bB6Ng01-322D09.g
ACCGA111112GA111113
length1,1381,162
definitionB6Ng01-322D09.b B6Ng01-322D09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,039,826 - 56,040,970)(56,184,236 - 56,185,406)
sequence
gaattcaagtaactttctaaaaataatctgcatactgagtaacttcctgc
tacttctgagagtaactctggtgtctgtatgctgtcagctatctgaagct
aagccttctttctttagtggaaaggcacaggtctgaaaattgctgcagtt
taatatctaacaacttattgcagctctctgcaagttcagacattttctgc
atcacacagagaacaaatgtagctaagtgttaattaaaaagaacatcttg
agtgtaaacattaaaaattgatcaccttctgtgagcaatttaatttatga
acattaacatattctaagctgatgtcttgaatttcagtggaacatcttca
ctgagtatgaaggggaggaaggaactgtgacatggacatgttcaaacctc
tgccttgtcatcacatgtgtgcagacactggggcctgaacagccccttca
gcaaggctctgacagcagcagctgcaaaagcagcagcctccccagcatcc
tgacctcctggattcacataatcaaccctgacaccactgtaatcattttt
ggcaaagtgggagacctgtggtgtggctctggcagcctgtctttcctttt
gcattctgctaaatcatttatgaatgcatttatttattgaattttcagct
cgttcagtaagctgtagcagagcgtgcatatgagaaaatgggaaaataaa
aaagaaatttcacttccagagtcagccaactatgtttgataattaattaa
gaagaaattaattaattaattaattaattaacttgtgagaacaagtcccg
taatttcaaaatctgctgtcaatgccatgaacccagtagcacatttagaa
aatgttataaaatatagtagaattaattttatctaaaatgtaaaaatgat
gatatcagtctcatagaattctgttcctttcattgggtgccttacctgtt
tcctggagtctggtggtccagggcctctctgatgctccctggcttctcag
agatcgtttcagatcatctggagcttctttcctgtttcccttgtactcta
ctgatctgcatctctcatgtctgctctgatccctagcataccacactaag
gcaatgaatgctgacctgtcatctggtgatccgatgtt

gaattctttcattcatggttaagagtgtttgtttgcatggatttatgtac
agcacatccatgcagtgctcacagcagccagaagaggtcattggatcacc
cagaactatagttaccggcagttttgagccactatgtgggtgctggaaac
agaacccaggtcttctacaggagcagccagtgcttcagctgcagatctct
acacatgcctttatttttttttaatgtaggtaacatttattttttcatga
gtctctagctcattcttctcccttcacattatttcttgcaaacaattttg
gttgatttctctagacacatataaacgtattcagacttcacaagacactt
tgtgagcgtgattcttagctactgagcataaagctaaagatagcaactaa
tgaagcacagaatggctaagggcatgaggttgctcatgaaagagtccctg
gccacatggatgaaggctgaggcactgtttacagaaacaaaccagctttg
tgcagaacatctgaggagaagctgagaccagctaaaggacttcatctccc
atttcctcctattaaaacaaatatagttttctatccaggaattcttttga
agacaaaagaacctgtaaatggggtaacaggtgtgtgggtgccatgtgta
attatgtactaatagaagcttcctttcttataaggttgctgatgacagag
ggtttgatctagggcttgttttctaatcacagtcaacatttccttcttga
agacattctattaacgtgtctatgccactatttttagatctatgacaaat
catatattctgtactaattcagaaatgtttttcattaactaactcttatc
aaataaatgctgttccaaggaagacacaaatcattctgagagcccagggg
ctggctccccttcacacagaaaggaaattgagtccatttgagagttaacc
ccctagtgagaaacacaggaaatgccatcttatgactaatcagagaaata
cacaggcattgagatagacccaccacccccaaaatggctccctagtcatt
atctattcttgatttccttaacaaatagatggttctgccaattgtgtagt
tctggctgtaatccagtatggattgaggctgagtcagagaatggggagat
tagtcaacttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_56039826_56040970
seq2: B6Ng01-322D09.b_46_1183

seq1  GAATTCAAGTAACTTTCTAAAAATAATCTGCATACTGAGTAACTTCCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTAACTTTCTAAAAATAATCTGCATACTGAGTAACTTCCTGC  50

seq1  TACTTCTGAGAGTAACTCTGGTGTCTGTATGCTGTCAGCTATCTGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGAGAGTAACTCTGGTGTCTGTATGCTGTCAGCTATCTGAAGCT  100

seq1  AAGCCTTCTTTCTTTAGTGGAAAGGCACAGGTCTGAAAATTGCTGCAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCTTTCTTTAGTGGAAAGGCACAGGTCTGAAAATTGCTGCAGTT  150

seq1  TAATATCTAACAACTTATTGCAGCTCTCTGCAAGTTCAGACATTTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTAACAACTTATTGCAGCTCTCTGCAAGTTCAGACATTTTCTGC  200

seq1  ATCACACAGAGAACAAATGTAGCTAAGTGTTAATTAAAAAGAACATCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACAGAGAACAAATGTAGCTAAGTGTTAATTAAAAAGAACATCTTG  250

seq1  AGTGTAAACATTAAAAATTGATCACCTTCTGTGAGCAATTTAATTTATGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAACATTAAAAATTGATCACCTTCTGTGAGCAATTTAATTTATGA  300

seq1  ACATTAACATATTCTAAGCTGATGTCTTGAATTTCAGTGGAACATCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAACATATTCTAAGCTGATGTCTTGAATTTCAGTGGAACATCTTCA  350

seq1  CTGAGTATGAAGGGGAGGAAGGAACTGTGACATGGACATGTTCAAACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATGAAGGGGAGGAAGGAACTGTGACATGGACATGTTCAAACCTC  400

seq1  TGCCTTGTCATCACATGTGTGCAGACACTGGGGCCTGAACAGCCCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTCATCACATGTGTGCAGACACTGGGGCCTGAACAGCCCCTTCA  450

seq1  GCAAGGCTCTGACAGCAGCAGCTGCAAAAGCAGCAGCCTCCCCAGCATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCTCTGACAGCAGCAGCTGCAAAAGCAGCAGCCTCCCCAGCATCC  500

seq1  TGACCTCCTGGATTCACATAATCAACCCTGACACCACTGTAATCATTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTCCTGGATTCACATAATCAACCCTGACACCACTGTAATCATTTTT  550

seq1  GGCAAAGTGGGAGACCTGTGGTGTGGCTCTGGCAGCCTGTCTTTCCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTGGGAGACCTGTGGTGTGGCTCTGGCAGCCTGTCTTTCCTTTT  600

seq1  GCATTCTGCTAAATCATTTATGAATGCATTTATTTATTGAATTTTCAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTGCTAAATCATTTATGAATGCATTTATTTATTGAATTTTCAGCT  650

seq1  CGTTCAGTAAGCTGTAGCAGAGCGTGCATATGAGAAAATGGGAAAATAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAGTAAGCTGTAGCAGAGCGTGCATATGAGAAAATGGGAAAATAAA  700

seq1  AAAGAAATTTCACTTCCAGAGTCAGCCAACTATGTTTGATAATTAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTTCACTTCCAGAGTCAGCCAACTATGTTTGATAATTAATTAA  750

seq1  GAAGAAATTAATTAATTAATTAATTAATTAACTTGTGAGAACAAGTCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTAATTAATTAATTAATTAATTAACTTGTGAGAACAAGTCCCG  800

seq1  TAATTTCAAAATCTGCTGTCAATGCCATGAACCCAGTAGCACATTTAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCAAAATCTGCTGTCAATGCCATGAACCCAGTAGCACATTTAGAA  850

seq1  AATGTTATAAAATATAGTAGAATTAATTTTATCTAAAATGTAAAAATGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATAAAATATAGTAGAATTAATTTTATCTAAAATGTAAAAATGAT  900

seq1  GATATCAGTCTCATAGAATTCTGTTCCTTTCATTGGGTGCCTTACCTGTT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATATCAGTCTCATAGAATTCTGTTCCTTTCATTGGGTGCCTTACCTG-T  949

seq1  TTCCTGGAGTCTGGTGGTCCAGGGCCTCTCTGATGCTCCCTGGCTTCTCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAGTCTGGTGGTCCAGGGCCTCTCTGATGCTCCCTGGCTTCTCA  999

seq1  GAGATCGTTCCAGATCATTCTGGAGCTTTCTTTCCTGTTTCCCTTGTACT  1050
      ||||||||| ||||||| |||||||| |||||||||||||||||||||||
seq2  GAGATCGTTTCAGATCA-TCTGGAGC-TTCTTTCCTGTTTCCCTTGTACT  1047

seq1  CTACTGGTCTGCATCTCCTCCATGTTCTGCTCTGGTCCCTTAGCATACCA  1100
      |||||| ||||||||||   |||| ||||||||| |||| ||||||||||
seq2  CTACTGATCTGCATCTC--TCATG-TCTGCTCTGATCCC-TAGCATACCA  1093

seq1  CACTTAAAGCAATG-ATGCTGACTTGTTCATCT-GTGATCAGATGTT  1145
      ||| ||| |||||| |||||||| || |||||| |||||| ||||||
seq2  CAC-TAAGGCAATGAATGCTGACCTG-TCATCTGGTGATCCGATGTT  1138


seq1: chr3_56184236_56185406
seq2: B6Ng01-322D09.g_67_1228 (reverse)

seq1  TCAAGTTGGCTTTAAACTCCCCATTCTCTGACCTCAGCCTC-ATTCATAC  49
      |||||||| |  ||| ||||||||||||||| ||||||||| || |||||
seq2  TCAAGTTGAC--TAATCTCCCCATTCTCTGA-CTCAGCCTCAATCCATAC  47

seq1  TGAATTACAGGCAGGAACTACCACATCTGCAGAACCATCTATTTGTTTAA  99
      || ||||||| || |||||||   ||  ||||||||||||||||| ||||
seq2  TGGATTACAGCCA-GAACTACACAATTGGCAGAACCATCTATTTG-TTAA  95

seq1  GGAAATTCAAGAATAGATAAATGAATTAGGGAGCCATTTTGGGGGT-GTG  148
      ||||| |||||||||||| |||| | |||||||||||||||||||| |||
seq2  GGAAA-TCAAGAATAGAT-AATG-ACTAGGGAGCCATTTTGGGGGTGGTG  142

seq1  GGTCTATCTCAAATGCTGTGTATTTCTTCTTGATTAGTCATAAGATTGGC  198
      ||||||||||||   ||||||||||||   ||||||||||||||| ||||
seq2  GGTCTATCTCAATGCCTGTGTATTTCT--CTGATTAGTCATAAGA-TGGC  189

seq1  ATTTCCTGTGTTTCTCACTAGGGGGTTAACTCTCAAATGGACTCAATTTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTGTTTCTCACTAGGGGGTTAACTCTCAAATGGACTCAATTTC  239

seq1  CTTTCTGTGTGAAGGGGAGCCAGCCCCTGGGCTCTCAGAATGATTTGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGTGAAGGGGAGCCAGCCCCTGGGCTCTCAGAATGATTTGTGT  289

seq1  CTTCCTTGGAACAGCATTTATTTGATAAGAGTTAGTTAATGAAAAACATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGGAACAGCATTTATTTGATAAGAGTTAGTTAATGAAAAACATT  339

seq1  TCTGAATTAGTACAGAATATATGATTTGTCATAGATCTAAAAATAGTGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATTAGTACAGAATATATGATTTGTCATAGATCTAAAAATAGTGGC  389

seq1  ATAGACACGTTAATAGAATGTCTTCAAGAAGGAAATGTTGACTGTGATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACACGTTAATAGAATGTCTTCAAGAAGGAAATGTTGACTGTGATTA  439

seq1  GAAAACAAGCCCTAGATCAAACCCTCTGTCATCAGCAACCTTATAAGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGCCCTAGATCAAACCCTCTGTCATCAGCAACCTTATAAGAAA  489

seq1  GGAAGCTTCTATTAGTACATAATTACACATGGCACCCACACACCTGTTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTTCTATTAGTACATAATTACACATGGCACCCACACACCTGTTAC  539

seq1  CCCATTTACAGGTTCTTTTGTCTTCAAAAGAATTCCTGGATAGAAAACTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTACAGGTTCTTTTGTCTTCAAAAGAATTCCTGGATAGAAAACTA  589

seq1  TATTTGTTTTAATAGGAGGAAATGGGAGATGAAGTCCTTTAGCTGGTCTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTTAATAGGAGGAAATGGGAGATGAAGTCCTTTAGCTGGTCTC  639

seq1  AGCTTCTCCTCAGATGTTCTGCACAAAGCTGGTTTGTTTCTGTAAACAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCCTCAGATGTTCTGCACAAAGCTGGTTTGTTTCTGTAAACAGT  689

seq1  GCCTCAGCCTTCATCCATGTGGCCAGGGACTCTTTCATGAGCAACCTCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCCTTCATCCATGTGGCCAGGGACTCTTTCATGAGCAACCTCAT  739

seq1  GCCCTTAGCCATTCTGTGCTTCATTAGTTGCTATCTTTAGCTTTATGCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAGCCATTCTGTGCTTCATTAGTTGCTATCTTTAGCTTTATGCTC  789

seq1  AGTAGCTAAGAATCACGCTCACAAAGTGTCTTGTGAAGTCTGAATACGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTAAGAATCACGCTCACAAAGTGTCTTGTGAAGTCTGAATACGTT  839

seq1  TATATGTGTCTAGAGAAATCAACCAAAATTGTTTGCAAGAAATAATGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTGTCTAGAGAAATCAACCAAAATTGTTTGCAAGAAATAATGTGA  889

seq1  AGGGAGAAGAATGAGCTAGAGACTCATGAAAAAATAAATGTTACCTACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAAGAATGAGCTAGAGACTCATGAAAAAATAAATGTTACCTACAT  939

seq1  TAAAAAAAAATAAAGGCATGTGTAGAGATCTGCAGCTGAAGCACTGGCTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATAAAGGCATGTGTAGAGATCTGCAGCTGAAGCACTGGCTG  989

seq1  CTCCTGTAGAAGACCTGGGTTCTGTTTCCAGCACCCACATAGTGGCTCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGTAGAAGACCTGGGTTCTGTTTCCAGCACCCACATAGTGGCTCAA  1039

seq1  AACTGCCGGTAACTATAGTTCTGGGTGATCCAATGACCTCTTCTGGCTGC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCCGGTAACTATAGTTCTGGGTGATCCAATGACCTCTTCTGGCTGC  1089

seq1  TGTGAGCACTGCATGGATGTGCTGTACATAAATCCATGCAAACAAACACT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCACTGCATGGATGTGCTGTACATAAATCCATGCAAACAAACACT  1139

seq1  CTTAACCATGAATGAAAGAATTC  1171
      |||||||||||||||||||||||
seq2  CTTAACCATGAATGAAAGAATTC  1162


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