BAC Information

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BAC

Clone NameB6Ng01-322H12
Chromosome3 (Build37)
Map Location 155,690,284 - 155,852,756
singlet/doubletdoublet
Overlap geneLOC624519
Upstream geneTnni3k, Fpgt, Lrrc44, EG383956, Scp2-ps1, EG668902
Downstream geneLOC100040901, 4930570G19Rik, Negr1, LOC100041152, LOC668853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322H12.bB6Ng01-322H12.g
ACCGA111302GA111303
length1,0471,110
definitionB6Ng01-322H12.b B6Ng01-322H12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,851,713 - 155,852,756)(155,690,284 - 155,691,409)
sequence
gaattctttgttcagttctgagccccatttttttaatggggttatttgat
tttctggagtccaccttcttgagttctttatatatattggatattagtcc
cctatctgatttaggatagttaacaatcttttaaatcccatcattcttct
gaaatattcacaacatttgtactcacatggctgaaggaagataagatatg
aaattgatgggagttagggtgagagagataaagaacaggatttttgaaca
ggtagaagttctggaagacagcagcctctcaggaagaactcattgaggaa
gaaaggaggaaagacatggaaaggagctgccaagtaaggatagagaaagc
tgcagagacatacacagctggaaggagaaagctgcagagacatacacaac
tggaaggggatgagctgagcagagagaatggactgactcgatctgtctac
agaaaatggagcattcctagagtacaggagaatgaaaggacactcaacag
acggtggtatagtgcataaaaaataccgaacaccaactgtgagtcaatag
cattgaacatgtaacttttcaacagtgcaaatagatgcctccacgagttc
atgctgggggaaattgaggtaaggagaatacactattccagtaatggacc
atcaggacagacatttgtttaagaaaagcattggaacataaatttagtac
tactcttatgggaatgttcctcactcactgaaatgtctagttatcccttc
agtattgaattcactaccatcattttcaagagtgatgaaatggatattaa
agaaggcaatattatctagaaatcacaaaccctttttttcagaatcctga
gaggtagctggagaaaacatttcttaccatagtcccagtgggctccatag
cctcactgtgggttgtgtgggaagaaggaaaaggactgttgagcagtgtt
ggtagtgagtcaaactcaatcactatggaacgcttccgtttgggttgcct
caaaggaatatgatgagcaaacatacacccttgactttctacttgaa

gaattcaatagaagagacttagagaaaacttagtttcactctaaaggtta
acaggacacactcagaccaacagagacaagagtagagcctgctgtggaaa
ttccttgtcatgagggggagtcatggggtattatcaataggagaatacca
gcaaaaatttgtcaaagaaaccagtgccccatctagaaggaatcccaggc
tccaatatatcatcagccataggagcctgactttaaacacactctgagga
aaacataacatggtagtcattgcaaagtaactataaaatattcaaagaag
cacaaagcagacatttctggttcctttggagactgttgggccatgtagtg
tttttctgaaagttgtcctatgaaaggacgttttgctgaggcagatgctt
gagaggacatgtgatgcttgtaaagagtatgtgtagaacccagcaagcca
taaatgacactcttgtattggcttgctttgcagtgctttgccagtcttca
ccgatctttatttgccatggctttgtagaaagaaagagcaccaaagaaca
tcttgtggtattccggctgcttcctgtcactactgcagactcataccaat
ttggtggatcctctcggtttcttctgaatggagtctcagctactgagtac
tgttttgtgttttcagattggactgctgttactgattcatggttgaagtt
ttgcactggatggctaatatcctgacaatgaagattggaatcaccccaaa
gaactagttataagcaggtacatatcccccttgtcctactatctttctct
cttacctttggtcagtgggctagaaaggaggttgacgaatttatgaacca
ttattaaagtaggttttcgaaaacctattcctgcaggggaaagttctttc
ttagccattaccatctgagccatagattatcactcattcacttacagctt
aaacagaactgattaatgtgcatgtctaaaagtatgactaacttaaactt
gatattgtttatattggctcagagattgggcttctgcttgactgtgaaat
gagcatgcctttttctgacctcactcttatggctctatcttgctctgcat
acacgtgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_155851713_155852756
seq2: B6Ng01-322H12.b_47_1093 (reverse)

seq1  TTCAAGTAGAAAG-CCAGGGTGTATGTCTGCTCCTTCATATTCCTTTGAG  49
      ||||||||||||| | ||||||||||| |||| | |||||||||||||||
seq2  TTCAAGTAGAAAGTCAAGGGTGTATGTTTGCT-CATCATATTCCTTTGAG  49

seq1  GCAAACCCAAACGGAAGCCTTCCATAGTGATTTAGTTTG-CTCACTACCA  98
      || ||||||||||||||| ||||||||||||| |||||| ||||||||||
seq2  GC-AACCCAAACGGAAGCGTTCCATAGTGATTGAGTTTGACTCACTACCA  98

seq1  ACACTGCTCAACAGTCC-TTTCCTTC-TCCCACACAAACCCACAGTGAGG  146
      ||||||||||||||||| |||||||| |||||||| ||||||||||||||
seq2  ACACTGCTCAACAGTCCTTTTCCTTCTTCCCACAC-AACCCACAGTGAGG  147

seq1  CTATGGAGCCCACTGGGACTATGGTAAG-AATGTTTTCTCCAGCTACCTC  195
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTATGGAGCCCACTGGGACTATGGTAAGAAATGTTTTCTCCAGCTACCTC  197

seq1  TCAGGATTCTG-AAAAAAGGGTTTGTGATTTCTAGATAATATTGCCTTCT  244
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATTCTGAAAAAAAGGGTTTGTGATTTCTAGATAATATTGCCTTCT  247

seq1  TTAATATCCATTTCATCACTCTTGAAAATGATGGTAGTGAATTCAATACT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCCATTTCATCACTCTTGAAAATGATGGTAGTGAATTCAATACT  297

seq1  GAAGGGATAACTAGACATTTCAGTGAGTGAGGAACATTCCCATAAGAGTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATAACTAGACATTTCAGTGAGTGAGGAACATTCCCATAAGAGTA  347

seq1  GTACTAAATTTATGTTCCAATGCTTTTCTTAAACAAATGTCTGTCCTGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAAATTTATGTTCCAATGCTTTTCTTAAACAAATGTCTGTCCTGAT  397

seq1  GGTCCATTACTGGAATAGTGTATTCTCCTTACCTCAATTTCCCCCAGCAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATTACTGGAATAGTGTATTCTCCTTACCTCAATTTCCCCCAGCAT  447

seq1  GAACTCGTGGAGGCATCTATTTGCACTGTTGAAAAGTTACATGTTCAATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCGTGGAGGCATCTATTTGCACTGTTGAAAAGTTACATGTTCAATG  497

seq1  CTATTGACTCACAGTTGGTGTTCGGTATTTTTTATGCACTATACCACCGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGACTCACAGTTGGTGTTCGGTATTTTTTATGCACTATACCACCGT  547

seq1  CTGTTGAGTGTCCTTTCATTCTCCTGTACTCTAGGAATGCTCCATTTTCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGTGTCCTTTCATTCTCCTGTACTCTAGGAATGCTCCATTTTCT  597

seq1  GTAGACAGATCGAGTCAGTCCATTCTCTCTGCTCAGCTCATCCCCTTCCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGATCGAGTCAGTCCATTCTCTCTGCTCAGCTCATCCCCTTCCA  647

seq1  GTTGTGTATGTCTCTGCAGCTTTCTCCTTCCAGCTGTGTATGTCTCTGCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTATGTCTCTGCAGCTTTCTCCTTCCAGCTGTGTATGTCTCTGCA  697

seq1  GCTTTCTCTATCCTTACTTGGCAGCTCCTTTCCATGTCTTTCCTCCTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTATCCTTACTTGGCAGCTCCTTTCCATGTCTTTCCTCCTTTC  747

seq1  TTCCTCAATGAGTTCTTCCTGAGAGGCTGCTGTCTTCCAGAACTTCTACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAATGAGTTCTTCCTGAGAGGCTGCTGTCTTCCAGAACTTCTACC  797

seq1  TGTTCAAAAATCCTGTTCTTTATCTCTCTCACCCTAACTCCCATCAATTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAAAAATCCTGTTCTTTATCTCTCTCACCCTAACTCCCATCAATTT  847

seq1  CATATCTTATCTTCCTTCAGCCATGTGAGTACAAATGTTGTGAATATTTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTTATCTTCCTTCAGCCATGTGAGTACAAATGTTGTGAATATTTC  897

seq1  AGAAGAATGATGGGATTTAAAAGATTGTTAACTATCCTAAATCAGATAGG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATGATGGGATTTAAAAGATTGTTAACTATCCTAAATCAGATAGG  947

seq1  GGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCAGAAA  997

seq1  ATCAAATAACCCCATTAAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATAACCCCATTAAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1047


seq1: chr3_155690284_155691409
seq2: B6Ng01-322H12.g_65_1174

seq1  GAATTCAATAGAAGAGACTTAGAGAAAACTTAGTTTCACTCTAAAGGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAGAAGAGACTTAGAGAAAACTTAGTTTCACTCTAAAGGTTA  50

seq1  ACAGGACACACTCAGACCAACAGAGACAAGAGTAGAGCCTGCTGTGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACACACTCAGACCAACAGAGACAAGAGTAGAGCCTGCTGTGGAAA  100

seq1  TTCCTTGTCATGAGGGGGAGTCATGGGGTATTATCAATAGGAGAATACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTCATGAGGGGGAGTCATGGGGTATTATCAATAGGAGAATACCA  150

seq1  GCAAAAATTTGTCAAAGAAACCAGTGCCCCATCTAGAAGGAATCCCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATTTGTCAAAGAAACCAGTGCCCCATCTAGAAGGAATCCCAGGC  200

seq1  TCCAATATATCATCAGCCATAGGAGCCTGACTTTAAACACACTCTGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATATCATCAGCCATAGGAGCCTGACTTTAAACACACTCTGAGGA  250

seq1  AAACATAACATGGTAGTCATTGCAAAGTAACTATAAAATATTCAAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAACATGGTAGTCATTGCAAAGTAACTATAAAATATTCAAAGAAG  300

seq1  CACAAAGCAGACATTTCTGGTTCCTTTGGAGACTGTTGGGCCATGTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGCAGACATTTCTGGTTCCTTTGGAGACTGTTGGGCCATGTAGTG  350

seq1  TTTTTCTGAAAGTTGTCCTATGAAAGGACGTTTTGCTGAGGCAGATGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGAAAGTTGTCCTATGAAAGGACGTTTTGCTGAGGCAGATGCTT  400

seq1  GAGAGGACATGTGATGCTTGTAAAGAGTATGTGTAGAACCCAGCAAGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACATGTGATGCTTGTAAAGAGTATGTGTAGAACCCAGCAAGCCA  450

seq1  TAAATGACACTCTTGTATTGGCTTGCTTTGCAGTGCTTTGCCAGTCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGACACTCTTGTATTGGCTTGCTTTGCAGTGCTTTGCCAGTCTTCA  500

seq1  CCGATCTTTATTTGCCATGGCTTTGTAGAAAGAAAGAGCACCAAAGAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATCTTTATTTGCCATGGCTTTGTAGAAAGAAAGAGCACCAAAGAACA  550

seq1  TCTTGTGGTATTCCGGCTGCTTCCTGTCACTACTGCAGACTCATACCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGGTATTCCGGCTGCTTCCTGTCACTACTGCAGACTCATACCAAT  600

seq1  TTGGTGGATCCTCTCGGTTTCTTCTGAATGGAGTCTCAGCTACTGAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGATCCTCTCGGTTTCTTCTGAATGGAGTCTCAGCTACTGAGTAC  650

seq1  TGTTTTGTGTTTTCAGATTGGACTGCTGTTACTGATTCATGGTTGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGTTTTCAGATTGGACTGCTGTTACTGATTCATGGTTGAAGTT  700

seq1  TTGCACTGGATGGCTAATATCCTGACAATGAAGATTGGAATCACCCCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGGATGGCTAATATCCTGACAATGAAGATTGGAATCACCCCAAA  750

seq1  GAACTAGTTATAAGCAGGTACATATCCCCCTTGTCCTACTATCTTTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGTTATAAGCAGGTACATATCCCCCTTGTCCTACTATCTTTCTCT  800

seq1  CTTACCTTTGGTCAGTGGGCTAGAAAGGAGGTTGACGAATTTATGAACCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTTGGTCAGTGGGCTAGAAAGGAGGTTGACGAATTTATGAACCA  850

seq1  TTATTAAAGTAGGTTTTCGAAAACCTATTCCTGCAGGGGAAAGTTCTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAAGTAGGTTTTCGAAAACCTATTCCTGCAGGGGAAAGTTCTTTC  900

seq1  TTAGCCATTACCATCTGAGCCATAGA-TATCACTCATTCACTTACAGCTT  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAGCCATTACCATCTGAGCCATAGATTATCACTCATTCACTTACAGCTT  950

seq1  AAACAGAACTGATTAATGTGCATGTCTAAAAAGTAATGACTAAACTTAAA  999
      ||||||||||||||||||||||||||| |||||| |||||| ||||| ||
seq2  AAACAGAACTGATTAATGTGCATGTCT-AAAAGT-ATGACT-AACTT-AA  996

seq1  ACTTGAATAATTTGTTTTAATTATTGGCTCAGAGATTTGGGCTTCTGCTT  1049
      ||||| |||  ||||||    |||||||||||||| ||||||||||||||
seq2  ACTTG-ATA--TTGTTT---ATATTGGCTCAGAGA-TTGGGCTTCTGCTT  1039

seq1  GACTGTGGAAATGAGGCCATGCCTTTTTCTGGAACTTCACTCTATGGGCT  1099
      |||||| ||||||||  ||||||||||||||  || |||||||   ||||
seq2  GACTGT-GAAATGAG--CATGCCTTTTTCTG--ACCTCACTCTTATGGCT  1084

seq1  CCTATCTTGCTCTGCATACACGTGCTT  1126
       ||||||||||||||||||||||||||
seq2  -CTATCTTGCTCTGCATACACGTGCTT  1110


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