BAC Information

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BAC

Clone NameB6Ng01-322P20
Chromosome3 (Build37)
Map Location 95,981,951 - 96,128,271
singlet/doubletdoublet
Overlap geneSv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Upstream geneGabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322P20.bB6Ng01-322P20.g
ACCGA111688GA111689
length1,0821,049
definitionB6Ng01-322P20.b B6Ng01-322P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,127,190 - 96,128,271)(95,981,951 - 95,982,990)
sequence
gaattcatatagaaacagcactccctccaattgagggataacataaagac
aatatcatagccagctagactgtctaggtcatcgtataaacatttttggt
ccagcatgatgctagatgttttggcaaaggtatattcaattaaattactt
ccttaggtttgtttgttttttgttttgtttttgtttgtttgtttgttttt
tcgagacagggtttctctgtatagccctggctgtcctggaactcactttg
tagaccaggctggcctcgaactcagagatccacattcctctgcctcccaa
gtgctgggattaaaggcgtgcgccaccacgcccggctcttgtttgttttt
aagacaggggtcctctacatagtcctggccatcctgaacttactatgtag
actaggcaagagtgtatttgaaatgagatcagcttttacattggtaaatg
ctaagtgaagcagaatgtgaatgggttttatccaatcagctgaaggactt
aataaaaacaggtggaccttcccaaagagggagtcaattgtatttattat
ataagataattataacactacgttacttgttctagaagacctacctaaac
caaaattcttacaggactcatttgctgggattcatacctttaacttttga
tttgccacaatgatgtgaaccaatatcttaaattacatattgattgatca
acatgtagctaggtggaagtctgctccatccttctggaaaatactgaaga
acagggtacattctactaattctctcctgttgcccacagcagacagagag
gaggcacaaacatcaggggtcagcgagcgaggtttttctcctttggggga
agatgctgggcacagagctctttaagaagtcattctgaccggcccctcta
gcccttggtttgaccaggtcaccagagaaataattcacaaatgtacaaaa
ttgtctttgagatgtcatctgatgaccagacagggagaggtccttctcac
ttccacagaaaaacacacgcattcctggatgtatttctatagttggagtt
aacacactatcaggatgtgaagattttttttt
gaattcactaggtagaccaggctggccatgaactcagatctgcctctgct
ggggttgaagacaccatgctcagaggaagcttcagctcctgagtgttatt
accatggctttcatctggagccatgggaatgtcttaagtaattgctagac
agggtgagtgaggaaagcagatgttcagtgaatgacgcttagatcttagt
cctaattgcgttcacattctccattcttccactctaacgtttatggttcc
tgcaaaggctttgctggtgaccaggatgaacacagcaagtgttaaactgt
cagaacatctaacttggtccgaatgttcaggaagacttcttcggaaaata
gtgatgtctaggtttttggtcggaagatggtcttactagtcagccatggt
ggtgcatgcctttgaccccggcagaggcgggcaggtgggtctcttgagtt
caagaccagtctggcctacatagttcctaggacaagccagagttaagaag
atgatctagcctaatcctaacccagaagccttacctggttctcaacaggc
cttgtcctcctgcctgtcaatagaatgttggaattgggaggttgccatgc
tcctagctggagttctcttgaaaggtggatctagcactaaggctgtgtga
aggctgaggtcagagccaggttgggctggaggttttagtgcttttcagct
ctttttcattggtgaccataaaaacccttcaaaacagctgggcagtggtg
gcgcatgcctttaatcccagcactcgggaggcagaggcaggtggatttct
gagtttgaggccagcctggtctacagagtgagttccaggacagccagggt
ttctacagagaaaccctgtctcaaaacaacaaacacaaacaaacaaaccc
ttcaaaacaaccttgaggtaaggggaggatgctgtgggctctttgcccag
gaatattgaactgccccaaggcatccaggtagtgaaatgactaagcaggt
ggaagcagacttggattagagatgtaatatgagaagttcaaccaaccga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96127190_96128271
seq2: B6Ng01-322P20.b_46_1127 (reverse)

seq1  AAAAAAAAATCTTCACACTCCTGATAGTGTGGTAAACTACAAACTATAGA  50
      ||||||||||||||||| |||||||||||| || |||| | |||||||||
seq2  AAAAAAAAATCTTCACA-TCCTGATAGTGT-GTTAACT-CCAACTATAGA  47

seq1  AATACATCCAGGAATGGCGTGGTTGTTTTTCTGT-GAAGTGAGAAGGACC  99
      ||||||||||||||| |||||  ||||||||||| |||||||||||||||
seq2  AATACATCCAGGAAT-GCGTG--TGTTTTTCTGTGGAAGTGAGAAGGACC  94

seq1  TCTCCCTGTCTGGTCATCAGATGACATCTCCAAGAC-ATTTTGTACATTT  148
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TCTCCCTGTCTGGTCATCAGATGACATCTCAAAGACAATTTTGTACATTT  144

seq1  GTG-ATTATTTCTCTGGTGACCTGGTCAA--CCAGGGCTAGAGGGGCCGG  195
      ||| |||||||||||||||||||||||||  | |||||||||||||||||
seq2  GTGAATTATTTCTCTGGTGACCTGGTCAAACCAAGGGCTAGAGGGGCCGG  194

seq1  TCAGAATGACTTCTTAAAGAGCTCTGTGCCCAGCATCTTCCCCC-AAGGA  244
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCAGAATGACTTCTTAAAGAGCTCTGTGCCCAGCATCTTCCCCCAAAGGA  244

seq1  GAAAAACCTCGCTCGCTGACCCCTGATGTTTGTGCCTCCTCTCTGTCTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCTCGCTCGCTGACCCCTGATGTTTGTGCCTCCTCTCTGTCTGC  294

seq1  TGTGGGCAACAGGAGAGAATTAGTAGAATGTACCCTGTTCTTCAGTATTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCAACAGGAGAGAATTAGTAGAATGTACCCTGTTCTTCAGTATTT  344

seq1  TCCAGAAGGATGGAGCAGACTTCCACCTAGCTACATGTTGATCAATCAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAGGATGGAGCAGACTTCCACCTAGCTACATGTTGATCAATCAAT  394

seq1  ATGTAATTTAAGATATTGGTTCACATCATTGTGGCAAATCAAAAGTTAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATTTAAGATATTGGTTCACATCATTGTGGCAAATCAAAAGTTAAA  444

seq1  GGTATGAATCCCAGCAAATGAGTCCTGTAAGAATTTTGGTTTAGGTAGGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAATCCCAGCAAATGAGTCCTGTAAGAATTTTGGTTTAGGTAGGT  494

seq1  CTTCTAGAACAAGTAACGTAGTGTTATAATTATCTTATATAATAAATACA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGAACAAGTAACGTAGTGTTATAATTATCTTATATAATAAATACA  544

seq1  ATTGACTCCCTCTTTGGGAAGGTCCACCTGTTTTTATTAAGTCCTTCAGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCCCTCTTTGGGAAGGTCCACCTGTTTTTATTAAGTCCTTCAGC  594

seq1  TGATTGGATAAAACCCATTCACATTCTGCTTCACTTAGCATTTACCAATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGATAAAACCCATTCACATTCTGCTTCACTTAGCATTTACCAATG  644

seq1  TAAAAGCTGATCTCATTTCAAATACACTCTTGCCTAGTCTACATAGTAAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTGATCTCATTTCAAATACACTCTTGCCTAGTCTACATAGTAAG  694

seq1  TTCAGGATGGCCAGGACTATGTAGAGGACCCCTGTCTTAAAAACAAACAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATGGCCAGGACTATGTAGAGGACCCCTGTCTTAAAAACAAACAA  744

seq1  GAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGA  794

seq1  GGAATGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTGGATCTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  844

seq1  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAACAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAACAA  894

seq1  ACAAACAAAAACAAAACAAAAAACAAACAAACCTAAGGAAGTAATTTAAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAACAAAACAAAAAACAAACAAACCTAAGGAAGTAATTTAAT  944

seq1  TGAATATACCTTTGCCAAAACATCTAGCATCATGCTGGACCAAAAATGTT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATACCTTTGCCAAAACATCTAGCATCATGCTGGACCAAAAATGTT  994

seq1  TATACGATGACCTAGACAGTCTAGCTGGCTATGATATTGTCTTTATGTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGATGACCTAGACAGTCTAGCTGGCTATGATATTGTCTTTATGTTA  1044

seq1  TCCCTCAATTGGAGGGAGTGCTGTTTCTATATGAATTC  1082
      ||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAATTGGAGGGAGTGCTGTTTCTATATGAATTC  1082

seq1: chr3_95981951_95982990
seq2: B6Ng01-322P20.g_66_1108

seq1  GAATTCACTAGGTAGACCAGGCTGGCCATGAACTCAGATCTGCCTCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGGTAGACCAGGCTGGCCATGAACTCAGATCTGCCTCTGCT  50

seq1  GGGGTTGAAGACACCATGCTCAGAGGAAGCTTCAGCTCCTGAGTGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGAAGACACCATGCTCAGAGGAAGCTTCAGCTCCTGAGTGTTATT  100

seq1  ACCATGGCTTTCATCTGGAGCCATGGGAATGTCTTAAGTAATTGCTAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGCTTTCATCTGGAGCCATGGGAATGTCTTAAGTAATTGCTAGAC  150

seq1  AGGGTGAGTGAGGAAAGCAGATGTTCAGTGAATGACGCTTAGATCTTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGTGAGGAAAGCAGATGTTCAGTGAATGACGCTTAGATCTTAGT  200

seq1  CCTAATTGCGTTCACATTCTCCATTCTTCCACTCTAACGTTTATGGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTGCGTTCACATTCTCCATTCTTCCACTCTAACGTTTATGGTTCC  250

seq1  TGCAAAGGCTTTGCTGGTGACCAGGATGAACACAGCAAGTGTTAAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGCTTTGCTGGTGACCAGGATGAACACAGCAAGTGTTAAACTGT  300

seq1  CAGAACATCTAACTTGGTCCGAATGTTCAGGAAGACTTCTTCGGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATCTAACTTGGTCCGAATGTTCAGGAAGACTTCTTCGGAAAATA  350

seq1  GTGATGTCTAGGTTTTTGGTCGGAAGATGGTCTTACTAGTCAGCCATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGTCTAGGTTTTTGGTCGGAAGATGGTCTTACTAGTCAGCCATGGT  400

seq1  GGTGCATGCCTTTGACCCCGGCAGAGGCGGGCAGGTGGGTCTCTTGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCATGCCTTTGACCCCGGCAGAGGCGGGCAGGTGGGTCTCTTGAGTT  450

seq1  CAAGACCAGTCTGGCCTACATAGTTCCTAGGACAAGCCAGAGTTAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACCAGTCTGGCCTACATAGTTCCTAGGACAAGCCAGAGTTAAGAAG  500

seq1  ATGATCTAGCCTAATCCTAACCCAGAAGCCTTACCTGGTTCTCAACAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTAGCCTAATCCTAACCCAGAAGCCTTACCTGGTTCTCAACAGGC  550

seq1  CTTGTCCTCCTGCCTGTCAATAGAATGTTGGAATTGGGAGGTTGCCATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTCCTGCCTGTCAATAGAATGTTGGAATTGGGAGGTTGCCATGC  600

seq1  TCCTAGCTGGAGTTCTCTTGAAAGGTGGATCTAGCACTAAGGCTGTGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCTGGAGTTCTCTTGAAAGGTGGATCTAGCACTAAGGCTGTGTGA  650

seq1  AGGCTGAGGTCAGAGCCAGGTTGGGCTGGAGGTTTTAGTGCTTTTCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGAGGTCAGAGCCAGGTTGGGCTGGAGGTTTTAGTGCTTTTCAGCT  700

seq1  CTTTTTCATTGGTGACCATAAAAACCCTTCAAAACAGCTGGGCAGTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCATTGGTGACCATAAAAACCCTTCAAAACAGCTGGGCAGTGGTG  750

seq1  GCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCT  800

seq1  GAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGG-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGT  850

seq1  TTCTACAGAGAAACCCTGTCTCAAAACAACAACAACAAACAAACAAAACC  899
      ||||||||||||||||||||||||||||||||  |||||||||| |||||
seq2  TTCTACAGAGAAACCCTGTCTCAAAACAACAAACACAAACAAAC-AAACC  899

seq1  CTTCAAAACAACCTTGAGGTAA-GGGAGGATGCTGTGGGCTCTTTGCCCA  948
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTTCAAAACAACCTTGAGGTAAGGGGAGGATGCTGTGGGCTCTTTGCCCA  949

seq1  GGAATA-TGAACTGCCCC-AGGCATCCAGGTAGTGAAATTGACTAAGCAG  996
      |||||| ||||||||||| ||||||||||||||||||| |||||||||||
seq2  GGAATATTGAACTGCCCCAAGGCATCCAGGTAGTGAAA-TGACTAAGCAG  998

seq1  GTGGAGGCAGACTTGGATTAGAGATGTAAATATGAGA--GTCAACC  1040
      ||||| ||||||||||||||||||||| |||||||||   ||||||
seq2  GTGGAAGCAGACTTGGATTAGAGATGT-AATATGAGAAGTTCAACC  1043