BAC Information

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BAC

Clone NameB6Ng01-323D05
Chromosome3 (Build37)
Map Location 44,244,770 - 44,383,490
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039264
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323D05.bB6Ng01-323D05.g
ACCGA111843GA111844
length1,1111,173
definitionB6Ng01-323D05.b B6Ng01-323D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,244,770 - 44,245,849)(44,382,310 - 44,383,490)
sequence
gaattctttgtttagctctgtaagccattttttaatagggttatttggtt
ctctggagtctaacttcttgagttctttgtataaattgaatattagccct
ctcctttgatcctgagaagacctgataccccagtgcaggggaatgccagg
acagggaaacaggagtgggtgggttgctttgtagggcgagggagatggga
tagcggcttttcaaaggggaaaccaggaaatgtgataacacttgcaatat
aaatatagaaaatatctaataaaaataataaaataaaataaaaataacat
ccagtgctttccaccataaaaaaaaggtaagaaagaaaaaagggaataaa
caagcaaacaaaaaacaaactaaaaacttattacaactattccataagta
aagcacccattcctgggtatcttttgagctatttgcatattgcccattag
tgaggagataagcatctatgtcttttgtttcacatgtatctctgtttata
gaatcattgcatatgcttcaaaattagaacagacaacttacttctataaa
ctcagtaaactgttttggaaaaatatctggaagtttatgtaccagtgata
acgattatctagagaagaactagaaggcaatagcaattttgtttttgtca
atggttgattgtgtcaggagcaatatatatatatatatatatatatatat
atatatatatatatatatcatctgtaatagcaataggctcaacatagttc
caatagatgaatgttacatgtgcccaggataatacactcctgcaggagct
gtgcataagagtaagtaaaaacaagtcagactaggatgacatagtttctg
actactactatctttttatatattctacaatgggaagaatgcttgtttgt
gttttttgcatgactgggaaaaaaagtcaatagaataatggattgttccc
aaggcacataaaattaaatgaaaattagaatcgttctctatatgaacagg
gaggcctaaggttttcgattgtaatcacagccaacatcccaattttgcat
cgttagctatttgcctctcttttgaagaactaattcgagttaagttattg
ccatctcagga

gaattcagtccaaaaacaaacaaaggcttctgagaaaaagtttttttatt
tttcttttgtagaattgcttttgattcaggtatttcttattctgaataac
aaatcaaaatgaataacatctactggagtatagtttttaatctaccagaa
gtcgtttaccattttatttttagttttcatagaaatatatttaaatttaa
gtaaaaactgccagattcctaccgtaaaagcattttcatagattgtcatg
tggatgcccagagtctcttagtccataaattctcacttttaacaatgcag
agtagatatagtcttcttctctctttcaatgtagatcctaatttggacag
ttgtatgaacagggaggtagggtgttaggacagaataccaactcttctat
aaggctactgtattgccacatcatttggaaaattttgcatcagccatctt
tcctgtcttacatattaaacggagataatttagtatctttgaggtgattg
gaataacatgaattaaaatccaataataattaatacaaaaaggtgaaaaa
aataagcacaaacaatactgttctctatgttttataatatattcttatgt
ttctaacatttaaacatcttccttttactaaaagtacataatgtaaaaga
tctatgaagcaaacaagggtacaaatatttcattagagtatagaatagaa
aaatattaatcattccatgaatattttagggaataattattttaataact
tttaaaatttttatatattgtcagattataagtctggcataggtatcctt
atactaatatgaaggagtcaggtaggctaaacacactcaggggctccatg
agggaatgtatatttcagcctttcctatgtcccaacattgcttgctttca
tttgtgtgtatgcttgttgcttttgcttgtggtcactttttctatcttta
aacagccttgctgaattttattataccattattcttctagtacatctatc
tttcactcttttgctcaaatagaagacctcttaatgagaaggatttcaga
aatgttatccccattcctggagcctctcccccacacctccatccattcct
cttccccctgctctatgaagatgttcctgacaccaccagtctatgccttg
gaattcacttcacctctggggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44244770_44245849
seq2: B6Ng01-323D05.b_46_1156

seq1  GAATTCTTTGTTTAGCTCTGTAAGCCATTTTTTAATAGGGTTATTTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTAAGCCATTTTTTAATAGGGTTATTTGGTT  50

seq1  CTCTGGAGTCTAACTTCTTGAGTTCTTTGTATAAATTGAATATTAGCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGTCTAACTTCTTGAGTTCTTTGTATAAATTGAATATTAGCCCT  100

seq1  CTCCTTTGATCCTGAGAAGACCTGATACCCCAGTGCAGGGGAATGCCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGATCCTGAGAAGACCTGATACCCCAGTGCAGGGGAATGCCAGG  150

seq1  ACAGGGAAACAGGAGTGGGTGGGTTGCTTTGTAGGGCGAGGGAGATGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAACAGGAGTGGGTGGGTTGCTTTGTAGGGCGAGGGAGATGGGA  200

seq1  TAGCGGCTTTTCAAAGGGGAAACCAGGAAATGTGATAACACTTGCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGCTTTTCAAAGGGGAAACCAGGAAATGTGATAACACTTGCAATAT  250

seq1  AAATATAGAAAATATCTAATAAAAATAATAAAATAAAATAAAAATAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGAAAATATCTAATAAAAATAATAAAATAAAATAAAAATAACAT  300

seq1  CCAGTGCTTTCCACCATAAAAAAAAGGTAAGAAAGAAAAAAGGGAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTTTCCACCATAAAAAAAAGGTAAGAAAGAAAAAAGGGAATAAA  350

seq1  CAAGCAAACAAAAAACAAACTAAAAACTTATTACAACTATTCCATAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAACAAAAAACAAACTAAAAACTTATTACAACTATTCCATAAGTA  400

seq1  AAGCACCCATTCCTGGGTATCTTTTGAGCTATTTGCATATTGCCCATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCCATTCCTGGGTATCTTTTGAGCTATTTGCATATTGCCCATTAG  450

seq1  TGAGGAGATAAGCATCTATGTCTTTTGTTTCACATGTATCTCTGTTTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGATAAGCATCTATGTCTTTTGTTTCACATGTATCTCTGTTTATA  500

seq1  GAATCATTGCATATGCTTCAAAATTAGAACAGACAACTTACTTCTATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTGCATATGCTTCAAAATTAGAACAGACAACTTACTTCTATAAA  550

seq1  CTCAGTAAACTGTTTTGGAAAAATATCTGGAAGTTTATGTACCAGTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAACTGTTTTGGAAAAATATCTGGAAGTTTATGTACCAGTGATA  600

seq1  ACGATTATCTAGAGAAGAACTAGAAGGCAATAGCAATTTTGTTTTTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATTATCTAGAGAAGAACTAGAAGGCAATAGCAATTTTGTTTTTGTCA  650

seq1  ATGGTTGATTGTGTCAGGAGCAATATATATATATATATATATATATATAT  700
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  ATGGTTGATTGTGTCAGGAGCA--ATATATATATATATATATATATATAT  698

seq1  ATATATATATATATATATATCATCTGTAATAGCAATAGGCTCAACATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATCATCTGTAATAGCAATAGGCTCAACATAGT  748

seq1  TCCAATAGATGAATGTTACATGTGCCCAGGATAATACACTCCTGCAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGATGAATGTTACATGTGCCCAGGATAATACACTCCTGCAGGAG  798

seq1  CTGTGCATAAGAGTAAGTAAAAACAAGTCAGGACTAGGATGACATAGTTT  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGTGCATAAGAGTAAGTAAAAACAAGTCA-GACTAGGATGACATAGTTT  847

seq1  CTGACTACTACTATC-TTTTATATATTCTACAAT-GGAAGAATGCTTGTT  898
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  CTGACTACTACTATCTTTTTATATATTCTACAATGGGAAGAATGCTTGTT  897

seq1  TGTG-TTTTTGCATGACTGG--AAAAAAGTCAATAGAATAA-GGAT--GT  942
      |||| |||||||||||||||  ||||||||||||||||||| ||||   |
seq2  TGTGTTTTTTGCATGACTGGGAAAAAAAGTCAATAGAATAATGGATTGTT  947

seq1  CCAAAGGCACATAAAA-TAAATGAAA--TTGAA----TGTCTCTATGAAC  985
      || ||||||||||||| |||||||||  | |||    | ||| |||||||
seq2  CCCAAGGCACATAAAATTAAATGAAAATTAGAATCGTTCTCTATATGAAC  997

seq1  A-GGAG--CTAAG--TTTCG-TTGT-ATCACAG-CAACAT-CCAATTTTG  1026
      | ||||  |||||  ||||| |||| ||||||| |||||| |||||||||
seq2  AGGGAGGCCTAAGGTTTTCGATTGTAATCACAGCCAACATCCCAATTTTG  1047

seq1  CATCG-TAGCTAT----AGCTCCTTTGAAGA--CAAATAGAGTTAAG-TA  1068
      ||||| |||||||      ||| ||||||||   || | |||||||| ||
seq2  CATCGTTAGCTATTTGCCTCTCTTTTGAAGAACTAATTCGAGTTAAGTTA  1097

seq1  T--GCATCTCAGGA  1080
      |   ||||||||||
seq2  TTGCCATCTCAGGA  1111


seq1: chr3_44382310_44383490
seq2: B6Ng01-323D05.g_66_1238 (reverse)

seq1  TGCCCCA---GTGTAGTGAATTCCAAGGCAT-GACTGGGTGGGTGGTTGA  46
      |||||||   ||| ||||||||||||||||| ||||     ||||||   
seq2  TGCCCCAGAGGTGAAGTGAATTCCAAGGCATAGACT-----GGTGGTGTC  45

seq1  GGGAACATCCTCATAGAAGCAGGGGGAGGAGGGATGGGATGGAGGGTGTG  96
       |||||||| |||||| |||||||||| |||| || ||||||| ||||||
seq2  AGGAACATCTTCATAG-AGCAGGGGGAAGAGGAAT-GGATGGA-GGTGTG  92

seq1  GGGGAGAGGGCTCCAAGAAAGGGGATAACATTTCTGAAATCCCTTCTCAT  146
      ||||||| ||||||| ||| |||||||||||||||||||| |||||||||
seq2  GGGGAGA-GGCTCCAGGAATGGGGATAACATTTCTGAAAT-CCTTCTCAT  140

seq1  TAAAGAGGTC-TCTATTTGAGCAAAAGAGTGAAAGATAGATGTACTTAGA  195
      | |||||||| |||||||||||||||||||||||||||||||||||   |
seq2  T-AAGAGGTCTTCTATTTGAGCAAAAGAGTGAAAGATAGATGTACTAGAA  189

seq1  GAATAATGGTATAATAAAATTCAGCAAGGCTGTTTTAAAGATAGAAAAAG  245
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATAATGGTATAATAAAATTCAGCAAGGCTG-TTTAAAGATAGAAAAAG  238

seq1  TGACCACAAGCAAAAGCAACAAGCATACACACAAATGAAAGCAAGCAATG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACAAGCAAAAGCAACAAGCATACACACAAATGAAAGCAAGCAATG  288

seq1  TTGGGACATAGGAAAGGCTGAAATATACATTCCCTCATGGAGCCCCCTGA  345
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTGGGACATAGGAAAGGCTGAAATATACATTCCCTCATGGAG-CCCCTGA  337

seq1  GTGTGTTTAGCCTACCTGACTCCTTCATATTAGTATAAGGATACCTATGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTAGCCTACCTGACTCCTTCATATTAGTATAAGGATACCTATGC  387

seq1  CAGACTTATAATCTGACAATATATAAAAATTTTAAAAGTTATTAAAATAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTATAATCTGACAATATATAAAAATTTTAAAAGTTATTAAAATAA  437

seq1  TTATTCCCTAAAATATTCATGGAATGATTAATATTTTTCTATTCTATACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCCTAAAATATTCATGGAATGATTAATATTTTTCTATTCTATACT  487

seq1  CTAATGAAATATTTGTACCCTTGTTTGCTTCATAGATCTTTTACATTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAATATTTGTACCCTTGTTTGCTTCATAGATCTTTTACATTATG  537

seq1  TACTTTTAGTAAAAGGAAGATGTTTAAATGTTAGAAACATAAGAATATAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTTAGTAAAAGGAAGATGTTTAAATGTTAGAAACATAAGAATATAT  587

seq1  TATAAAACATAGAGAACAGTATTGTTTGTGCTTATTTTTTTCACCTTTTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACATAGAGAACAGTATTGTTTGTGCTTATTTTTTTCACCTTTTT  637

seq1  GTATTAATTATTATTGGATTTTAATTCATGTTATTCCAATCACCTCAAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAATTATTATTGGATTTTAATTCATGTTATTCCAATCACCTCAAAG  687

seq1  ATACTAAATTATCTCCGTTTAATATGTAAGACAGGAAAGATGGCTGATGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAATTATCTCCGTTTAATATGTAAGACAGGAAAGATGGCTGATGC  737

seq1  AAAATTTTCCAAATGATGTGGCAATACAGTAGCCTTATAGAAGAGTTGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTCCAAATGATGTGGCAATACAGTAGCCTTATAGAAGAGTTGGT  787

seq1  ATTCTGTCCTAACACCCTACCTCCCTGTTCATACAACTGTCCAAATTAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTCCTAACACCCTACCTCCCTGTTCATACAACTGTCCAAATTAGG  837

seq1  ATCTACATTGAAAGAGAGAAGAAGACTATATCTACTCTGCATTGTTAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACATTGAAAGAGAGAAGAAGACTATATCTACTCTGCATTGTTAAAA  887

seq1  GTGAGAATTTATGGACTAAGAGACTCTGGGCATCCACATGACAATCTATG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAATTTATGGACTAAGAGACTCTGGGCATCCACATGACAATCTATG  937

seq1  AAAATGCTTTTACGGTAGGAATCTGGCAGTTTTTACTTAAATTTAAATAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTTTTACGGTAGGAATCTGGCAGTTTTTACTTAAATTTAAATAT  987

seq1  ATTTCTATGAAAACTAAAAATAAAATGGTAAACGACTTCTGGTAGATTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATGAAAACTAAAAATAAAATGGTAAACGACTTCTGGTAGATTAA  1037

seq1  AAACTATACTCCAGTAGATGTTATTCATTTTGATTTGTTATTCAGAATAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATACTCCAGTAGATGTTATTCATTTTGATTTGTTATTCAGAATAA  1087

seq1  GAAATACCTGAATCAAAAGCAATTCTACAAAAGAAAAATAAAAAAACTTT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACCTGAATCAAAAGCAATTCTACAAAAGAAAAATAAAAAAACTTT  1137

seq1  TTCTCAGAAGCCTTTGTTTGTTTTTGGACTGAATTC  1181
      ||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGAAGCCTTTGTTTGTTTTTGGACTGAATTC  1173


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