BAC Information

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BAC

Clone NameB6Ng01-323D13
Chromosome3 (Build37)
Map Location 12,343,845 - 12,432,762
singlet/doubletdoublet
Overlap geneEG621965
Upstream geneLOC667999
Downstream geneLOC100039798, EG668033, LOC668037, LOC100039823
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323D13.bB6Ng01-323D13.g
ACCGA111859GA111860
length6311,130
definitionB6Ng01-323D13.b B6Ng01-323D13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,343,845 - 12,344,475)(12,431,635 - 12,432,762)
sequence
gaattcattcaacctttaagaaaatgttataaaagtagaaagaggactac
atggaaaaagaagggagttcgcagaagaggaatggaacaatagaatacat
attttgtcctaagtgtgaaaaataaattatatcccatatcttttctgttc
taattataaacagatgataaagtacataggatttttgtcttaaaaatcat
aagaatactattaatatgtgaattaatttcccattgtatatttatatttg
tttatttaattgaatattttctttatttacagttcaattattatcctgtt
tctctgtccccatatcccccaaaatttcctgtccctttcttccaccccct
gcttctatgaaggtattccactacccacccacccattcccacaactcagc
cctggaattcccctacatggggcatcaaactctggggttagggttctgat
tggttgatgttgttcttcctatgggttgcaaaccccttctctttcttatt
cctccattgggggacctgtgttcaccccaatggctggttgcaatcatcca
tatttgtaattgttcaggctcatataaattccatatatatatatatatat
atatatatatatatatatgtgtgtgtgtgtg

gaattcttcatcccacagtatttaaaaatctatgctgagatatgaaacaa
aaattaaacaaatacaaataattcctagcctgtttcatgacatatgctta
atgaatgaaaaataaagtgggttatcaaaaaaaattctcaattaataatg
tttccttgaaataaatgtaaaaccaaatataatcaggaagctaaggataa
atcagacatggaaggatgtgcagagggcaccaatgacttttgattacaac
ttaaacctaaagataagtaggtagaatgactgttaaatatggggttattc
aaataagcaaacaatgcagaaataagtatagctctggacaagccttcaat
acactttatttattaagaaatacagtggacaacctattcatgatatactt
tgagagatttttcactatgtgcagaatacatgtaaaacttgaaagaaatt
cttctcttcctttaatatatatacttgattattttgtttgggttagtttg
ttaatgcatatatactattctcttcaacatattccttcacttacttatat
aagtacgtctcatggacaatcatactttgggatactgttttgtatagtgc
aattttcttcttaaaatatcttatatctggtcattgaaatatgtttcaat
ttaattatatgttgttatcacttatgcctatatgagagagagagagaatg
catgtgtgtgtctgtataagattgggtatatctgtgttctgtgacctgca
agactttgggggttgatttgactagacagatggggaaatggaaaaacaga
ggccatatgtacaaagtatttgggatatgaagggctgtgtgatctgatgg
agatacagtaacaacaactaagaaactcagcatatttattttatactgca
acagctgaagccaaaggtagcttatctcaataggcagtctctttagtgaa
gcagtctctgcaaatcctttccatatactctttctaaatttcttgccatg
atcggctcactgttcatttttagaagtcagcaaatttcttcaccttagca
tgcacatgacaaggtgcatggtgtgggcagctgtttcctgctctgctgtt
cctctccactgtctggaacttttcacttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12343845_12344475
seq2: B6Ng01-323D13.b_48_678

seq1  GAATTCATTCAACCTTTAAGAAAATGTTATAAAAGTAGAAAGAGGACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCAACCTTTAAGAAAATGTTATAAAAGTAGAAAGAGGACTAC  50

seq1  ATGGAAAAAGAAGGGAGTTCGCAGAAGAGGAATGGAACAATAGAATACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAAGAAGGGAGTTCGCAGAAGAGGAATGGAACAATAGAATACAT  100

seq1  ATTTTGTCCTAAGTGTGAAAAATAAATTATATCCCATATCTTTTCTGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCCTAAGTGTGAAAAATAAATTATATCCCATATCTTTTCTGTTC  150

seq1  TAATTATAAACAGATGATAAAGTACATAGGATTTTTGTCTTAAAAATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTATAAACAGATGATAAAGTACATAGGATTTTTGTCTTAAAAATCAT  200

seq1  AAGAATACTATTAATATGTGAATTAATTTCCCATTGTATATTTATATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTATTAATATGTGAATTAATTTCCCATTGTATATTTATATTTG  250

seq1  TTTATTTAATTGAATATTTTCTTTATTTACAGTTCAATTATTATCCTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTAATTGAATATTTTCTTTATTTACAGTTCAATTATTATCCTGTT  300

seq1  TCTCTGTCCCCATATCCCCCAAAATTTCCTGTCCCTTTCTTCCACCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCCCATATCCCCCAAAATTTCCTGTCCCTTTCTTCCACCCCCT  350

seq1  GCTTCTATGAAGGTATTCCACTACCCACCCACCCATTCCCACAACTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTATGAAGGTATTCCACTACCCACCCACCCATTCCCACAACTCAGC  400

seq1  CCTGGAATTCCCCTACATGGGGCATCAAACTCTGGGGTTAGGGTTCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATTCCCCTACATGGGGCATCAAACTCTGGGGTTAGGGTTCTGAT  450

seq1  TGGTTGATGTTGTTCTTCCTATGGGTTGCAAACCCCTTCTCTTTCTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGATGTTGTTCTTCCTATGGGTTGCAAACCCCTTCTCTTTCTTATT  500

seq1  CCTCCATTGGGGGACCTGTGTTCACCCCAATGGCTGGTTGCAATCATCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATTGGGGGACCTGTGTTCACCCCAATGGCTGGTTGCAATCATCCA  550

seq1  TATTTGTAATTGTTCAGGCTCATATAAATTCCATATATATATATATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAATTGTTCAGGCTCATATAAATTCCATATATATATATATATAT  600

seq1  ATATATATATATATATATGTGTGTGTGTGTG  631
      |||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATGTGTGTGTGTGTG  631


seq1: chr3_12431635_12432762
seq2: B6Ng01-323D13.g_64_1193 (reverse)

seq1  GGAAGTGAAAAGTTTCCAGACAGTGTGAGAGG-ACAGCAGAGCAGGAAAC  49
      |||||||||||| |||||||||||| |||||| |||||||||||||||||
seq2  GGAAGTGAAAAG-TTCCAGACAGTG-GAGAGGAACAGCAGAGCAGGAAAC  48

seq1  AGCTGCCCACA-CATGCACC-TGTCATTGTGCATGCTAAGGTGAAGAAAT  97
      ||||||||||| |||||||| ||||| |||||||||||||||||||||||
seq2  AGCTGCCCACACCATGCACCTTGTCA-TGTGCATGCTAAGGTGAAGAAAT  97

seq1  TTGCTGACTTCTAAAAATGAACAGTGAGCCGATCATGGCAAGAAATTTAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACTTCTAAAAATGAACAGTGAGCCGATCATGGCAAGAAATTTAG  147

seq1  AAAGAGTATATGG-AAGGATTTGCAGAGACTGCTTCACTAAAGAGACTGC  196
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTATATGGAAAGGATTTGCAGAGACTGCTTCACTAAAGAGACTGC  197

seq1  CTATTGAGATAAGCTACC-TTGGCTTCAGCTGTTGCAGTATAAAATAAAT  245
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTATTGAGATAAGCTACCTTTGGCTTCAGCTGTTGCAGTATAAAATAAAT  247

seq1  ATGCTGAGTTTCTTAGTTGTTGTTACTGTATCTCCATCAGATCACACAGC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAGTTTCTTAGTTGTTGTTACTGTATCTCCATCAGATCACACAGC  297

seq1  CCTTCATATCCCAAATACTTTGTACATATGGCCTCTGTTTTTCCATTTCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATATCCCAAATACTTTGTACATATGGCCTCTGTTTTTCCATTTCC  347

seq1  CCATCTGTCTAGTCAAATCAACCCCCAAAGTCTTGCAGGTCACAGAACAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGTCTAGTCAAATCAACCCCCAAAGTCTTGCAGGTCACAGAACAC  397

seq1  AGATATACCCAATCTTATACAGACACACACATGCATTCTCTCTCTCTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACCCAATCTTATACAGACACACACATGCATTCTCTCTCTCTCTC  447

seq1  ATATAGGCATAAGTGATAACAACATATAATTAAATTGAAACATATTTCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGGCATAAGTGATAACAACATATAATTAAATTGAAACATATTTCAA  497

seq1  TGACCAGATATAAGATATTTTAAGAAGAAAATTGCACTATACAAAACAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGATATAAGATATTTTAAGAAGAAAATTGCACTATACAAAACAGT  547

seq1  ATCCCAAAGTATGATTGTCCATGAGACGTACTTATATAAGTAAGTGAAGG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAGTATGATTGTCCATGAGACGTACTTATATAAGTAAGTGAAGG  597

seq1  AATATGTTGAAGAGAATAGTATATATGCATTAACAAACTAACCCAAACAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTTGAAGAGAATAGTATATATGCATTAACAAACTAACCCAAACAA  647

seq1  AATAATCAAGTATATATATTAAAGGAAGAGAAGAATTTCTTTCAAGTTTT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCAAGTATATATATTAAAGGAAGAGAAGAATTTCTTTCAAGTTTT  697

seq1  ACATGTATTCTGCACATAGTGAAAAATCTCTCAAAGTATATCATGAATAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATTCTGCACATAGTGAAAAATCTCTCAAAGTATATCATGAATAG  747

seq1  GTTGTCCACTGTATTTCTTAATAAATAAAGTGTATTGAAGGCTTGTCCAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCACTGTATTTCTTAATAAATAAAGTGTATTGAAGGCTTGTCCAG  797

seq1  AGCTATACTTATTTCTGCATTGTTTGCTTATTTGAATAACCCCATATTTA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATACTTATTTCTGCATTGTTTGCTTATTTGAATAACCCCATATTTA  847

seq1  ACAGTCATTCTACCTACTTATCTTTAGGTTTAAGTTGTAATCAAAAGTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCATTCTACCTACTTATCTTTAGGTTTAAGTTGTAATCAAAAGTCA  897

seq1  TTGGTGCCCTCTGCACATCCTTCCATGTCTGATTTATCCTTAGCTTCCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGCCCTCTGCACATCCTTCCATGTCTGATTTATCCTTAGCTTCCTG  947

seq1  ATTATATTTGGTTTTACATTTATTTCAAGGAAACATTATTAATTGAGAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTGGTTTTACATTTATTTCAAGGAAACATTATTAATTGAGAAT  997

seq1  TTTTTTTGATAACCCACTTTATTTTTCATTCATTAAGCATATGTCATGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGATAACCCACTTTATTTTTCATTCATTAAGCATATGTCATGAA  1047

seq1  ACAGGCTAGGAATTATTTGTATTTGTTTAATTTTTGTTTCATATCTCAGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTAGGAATTATTTGTATTTGTTTAATTTTTGTTTCATATCTCAGC  1097

seq1  ATAGATTTTTAAATACTGTGGGATGAAGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  ATAGATTTTTAAATACTGTGGGATGAAGAATTC  1130


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