BAC Information

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BAC

Clone NameB6Ng01-323I20
Chromosome3 (Build37)
Map Location 60,320,156 - 60,379,195
singlet/doubletdoublet
Overlap geneLOC100040485, Mbnl1
Upstream geneEG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823
Downstream geneLOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323I20.bB6Ng01-323I20.g
ACCGA112099GA112100
length1,025719
definitionB6Ng01-323I20.b B6Ng01-323I20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,378,163 - 60,379,195)(60,320,156 - 60,320,873)
sequence
gaattcagaccacactattacacaccacctcaaaaaacaactggaaattg
tcaacagctttataagtataaggcttcaaactcttcatgatatacctgta
tcccagaacacatgcaattctctgtacagcaacgtgcaccaaagagctgt
ctttaggaggactgtaaacaagcttggtataaacaagcttggaggcgttg
cttggctgtttgttccaaggcagcagctcttccagagagatgagaaacct
ctgttgatctggtaacaatggatccttcagaggagctcagctagtgcaat
acaatgtatcccctactcatgaaacagtacttctctgtgggcaaacttta
cagatttcttctattttcagaataatatctggctctgcacaggacttact
aacagttctgaagcaagcgtttacatatggtgtcactcctaagacataag
acatgtggcattagataatttggcagacccttagcaccttttaaccacag
ctgtgtcttcacaagggacttggtgtactttgaagaatcccaggtatcgg
ttggtactaaattctacccccttttacaatctgttggtaatcagggctca
ctgatatcaagagcagagacaagaatctgcatgggtaactgaggagctat
ggggaacagtgcagacactggtgccaaatccgaaggctagggctaccttc
taggaacctttgcttcttttgtccagggcagccaccaagcagctctaggc
tgtgagtcagtgcgtccttgccatgtaactgagaagcagtcctctagaat
gaggcaacttagagttgtgaggacaccttgtaagtatggaatgatccttg
agggaaagtcctgtttccttgtccagaacgcacaaaccagcaataaaatg
gaactgaacacaatgctcaaagatagaaagctgactttaagagataagaa
acaccagggaagactagcccttgctcgagcactgatgcagcaggagaata
tcagacagacgcggctgtgagcttc
gaattctcagcactcaggaagcacacgccgagttcttgggcactgaccca
ttcggacttgatcccagcccagagctggggccaaccccattgcttgtagt
ggctccatagagtccagtctgtggtcttcatggtccgggattcccaggcc
cgactttgttggctgccctttgtcttgttgccttttctgtgcctgatgaa
acagtccttcttcctgtgccagtgctgccgcccagtgacagagcacctga
ctagcacgtgcacggatgtgggttcagtcccaggcactgaatctaaaaac
aaaccccaacaaaacaaaacagcaacaccaagctccccctgccccccaaa
cccccaaaccaaaactgttcttccacttcaaccctagatctgttgcccac
gtcgaagtctcctctgacctctttaactcctcagcctgctgtgtacttct
cacctttgataatagttgttagttatgtccttgaatgagcagcagatccc
tccagggctagatctccgttttccctgagctcatctcaagggtgatcgga
agacattaagcagtgcacatgatgatcccatctctgcgttttgttttgtc
ttgtttgttttttgttttgttttgtttttttttttttttggtttattcat
tcaatatggtcactgtgagttgaatgtgttgttgtttttgttttttggtt
ttttttttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60378163_60379195
seq2: B6Ng01-323I20.b_44_1068 (reverse)

seq1  GAAGCTCACAGGCCGCGTCTGTTCTGATATTTCTCCTTGCTGCATCAGTG  50
      |||||||||| |||||||||| ||||||| |||||| |||||||||||||
seq2  GAAGCTCACA-GCCGCGTCTG-TCTGATA-TTCTCC-TGCTGCATCAGTG  46

seq1  CTCGAGCAAGGGCTAGTCTTCCCCTGGTGTTTCCTTATCTCTTAAAGTCA  100
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  CTCGAGCAAGGGCTAGTCTT-CCCTGGTGTTT-CTTATCTCTTAAAGTCA  94

seq1  GCTTTCCTTATCTTTGAGCATTGTGTTCAGTTCCATTTTATTGCTGGTTT  150
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTC--TATCTTTGAGCATTGTGTTCAGTTCCATTTTATTGCTGGTTT  142

seq1  GTGCGTTCTGGACAAGGAAACAGGACTTTCCCTCAAGGATCATTCCATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCGTTCTGGACAAGGAAACAGGACTTTCCCTCAAGGATCATTCCATAC  192

seq1  TTACAAGGTGTCCTCACAACTCTAAGTTGCCTCATTCTAGAGGACTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGGTGTCCTCACAACTCTAAGTTGCCTCATTCTAGAGGACTGCTT  242

seq1  CTCAGTTACATGGCAAGGACGCACTGACTCACAGCCTAGAGCTGCTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTACATGGCAAGGACGCACTGACTCACAGCCTAGAGCTGCTTGGT  292

seq1  GGCTGCCCTGGACAAAAGAAGCAAAGGTTCCTAGAAGGTAGCCCTAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCCCTGGACAAAAGAAGCAAAGGTTCCTAGAAGGTAGCCCTAGCCT  342

seq1  TCGGATTTGGCACCAGTGTCTGCACTGTTCCCCATAGCTCCTCAGTTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGATTTGGCACCAGTGTCTGCACTGTTCCCCATAGCTCCTCAGTTACC  392

seq1  CATGCAGATTCTTGTCTCTGCTCTTGATATCAGTGAGCCCTGATTACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATTCTTGTCTCTGCTCTTGATATCAGTGAGCCCTGATTACCAA  442

seq1  CAGATTGTAAAAGGGGGTAGAATTTAGTACCAACCGATACCTGGGATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTGTAAAAGGGGGTAGAATTTAGTACCAACCGATACCTGGGATTCT  492

seq1  TCAAAGTACACCAAGTCCCTTGTGAAGACACAGCTGTGGTTAAAAGGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTACACCAAGTCCCTTGTGAAGACACAGCTGTGGTTAAAAGGTGC  542

seq1  TAAGGGTCTGCCAAATTATCTAATGCCACATGTCTTATGTCTTAGGAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGTCTGCCAAATTATCTAATGCCACATGTCTTATGTCTTAGGAGTG  592

seq1  ACACCATATGTAAACGCTTGCTTCAGAACTGTTAGTAAGTCCTGTGCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATATGTAAACGCTTGCTTCAGAACTGTTAGTAAGTCCTGTGCAGA  642

seq1  GCCAGATATTATTCTGAAAATAGAAGAAATCTGTAAAGTTTGCCCACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGATATTATTCTGAAAATAGAAGAAATCTGTAAAGTTTGCCCACAGA  692

seq1  GAAGTACTGTTTCATGAGTAGGGGATACATTGTATTGCACTAGCTGAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACTGTTTCATGAGTAGGGGATACATTGTATTGCACTAGCTGAGCT  742

seq1  CCTCTGAAGGATCCATTGTTACCAGATCAACAGAGGTTTCTCATCTCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGAAGGATCCATTGTTACCAGATCAACAGAGGTTTCTCATCTCTCT  792

seq1  GGAAGAGCTGCTGCCTTGGAACAAACAGCCAAGCAACGCCTCCAAGCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCTGCTGCCTTGGAACAAACAGCCAAGCAACGCCTCCAAGCTTG  842

seq1  TTTATACCAAGCTTGTTTACAGTCCTCCTAAAGACAGCTCTTTGGTGCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACCAAGCTTGTTTACAGTCCTCCTAAAGACAGCTCTTTGGTGCAC  892

seq1  GTTGCTGTACAGAGAATTGCATGTGTTCTGGGATACAGGTATATCATGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTACAGAGAATTGCATGTGTTCTGGGATACAGGTATATCATGAA  942

seq1  GAGTTTGAAGCCTTATACTTATAAAGCTGTTGACAATTTCCAGTTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAAGCCTTATACTTATAAAGCTGTTGACAATTTCCAGTTGTTTT  992

seq1  TTGAGGTGGTGTGTAATAGTGTGGTCTGAATTC  1033
      |||||||||||||||||||||||||||||||||
seq2  TTGAGGTGGTGTGTAATAGTGTGGTCTGAATTC  1025

seq1: chr3_60320156_60320873
seq2: B6Ng01-323I20.g_65_782

seq1  GAATTCTCAGCACTCAGGAAGCACACGCCGAGTTCTTGGGCACTGACCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCACTCAGGAAGCACACGCCGAGTTCTTGGGCACTGACCCA  50

seq1  TTCGGACTTGATCCCAGCCCAGAGCTGGGGCCAACCCCATTGCTTGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGACTTGATCCCAGCCCAGAGCTGGGGCCAACCCCATTGCTTGTAGT  100

seq1  GGCTCCATAGAGTCCAGTCTGTGGTCTTCATGGTCCGGGATTCCCAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCATAGAGTCCAGTCTGTGGTCTTCATGGTCCGGGATTCCCAGGCC  150

seq1  CGACTTTGTTGGCTGCCCTTTGTCTTGTTGCCTTTTCTGTGCCTGATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTTGTTGGCTGCCCTTTGTCTTGTTGCCTTTTCTGTGCCTGATGAA  200

seq1  ACAGTCCTTCTTCCTGTGCCAGTGCTGCCGCCCAGTGACAGAGCACCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCTTCTTCCTGTGCCAGTGCTGCCGCCCAGTGACAGAGCACCTGA  250

seq1  CTAGCACGTGCACGGATGTGGGTTCAGTCCCAGGCACTGAATCTAAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACGTGCACGGATGTGGGTTCAGTCCCAGGCACTGAATCTAAAAAC  300

seq1  AAACCCCAACAAAACAAAACAGCAACACCAAGCTCCCCCTGCCCCCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAACAAAACAAAACAGCAACACCAAGCTCCCCCTGCCCCCCAAA  350

seq1  CCCCCAAACCAAAACTGTTCTTCCACTTCAACCCTAGATCTGTTGCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAAACCAAAACTGTTCTTCCACTTCAACCCTAGATCTGTTGCCCAC  400

seq1  GTCGAAGTCTCCTCTGACCTCTTTAACTCCTCAGCCTGCTGTGTACTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAAGTCTCCTCTGACCTCTTTAACTCCTCAGCCTGCTGTGTACTTCT  450

seq1  CACCTTTGATAATAGTTGTTAGTTATGTCCTTGAATGAGCAGCAGATCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGATAATAGTTGTTAGTTATGTCCTTGAATGAGCAGCAGATCCC  500

seq1  TCCAGGGCTAGATCTCCGTTTTCCCTGAGCTCATCTCAAGGGTGATCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCTAGATCTCCGTTTTCCCTGAGCTCATCTCAAGGGTGATCGGA  550

seq1  AGACATTAAGCAGTGCACATGATGATCCCATCTCTGCGTTTTGTTTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTAAGCAGTGCACATGATGATCCCATCTCTGCGTTTTGTTTTGTC  600

seq1  TTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTGGTTTATTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTTTTGTTTTGTTTTGTTTTTTTTTTTTTTTGGTTTATTCAT  650

seq1  TCAATATGGTCACTGTGAGTTGAATGTGTTGTTGTTTTTGTTTTTTGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGGTCACTGTGAGTTGAATGTGTTGTTGTTTTTGTTTTTTGGTT  700

seq1  TTTTTTTTGGGGGGGGGG  718
      ||||||||||||||||||
seq2  TTTTTTTTGGGGGGGGGG  718