BAC Information

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BAC

Clone NameB6Ng01-323L16
Chromosome3 (Build37)
Map Location 49,339,306 - 49,510,544
singlet/doubletdoublet
Overlap geneLOC100039587, LOC638779
Upstream gene1700018B24Rik, LOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579
Downstream genePcdh18, LOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323L16.bB6Ng01-323L16.g
ACCGA112235GA112236
length5001,069
definitionB6Ng01-323L16.b B6Ng01-323L16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,339,306 - 49,339,767)(49,509,474 - 49,510,544)
sequence
gaattccttgttatatgtagtactcacctcctttctgctattagaattct
aatttcttattcttctttaaacctctcaactttttaatataaggttatag
atttctattaaactcttttttctcatgcttaaattactttgtttgaatta
ctaattatatcctatctgccttgccaatgataaatcttgtattcttttta
tatgttagtcattaaagcatttcaattgttaaaactaaatattacagttg
attagagaacatatttcttcacagatactttcgaattctaccaaccttag
aggtcaatctgagatcttaactcctcataatataatgtacaagacgttgg
acatgtttttagtctttaaaatgtttcatttaattaagttatttatttat
ttatttatttatttatttatttatttatttatttatttattgagtgtgtg
tgtgtgtgggtgagttatgttcattactggtcttttcataatagccagaa

gaattcacttgcctatgtgagaattggccttctgaaggatacttagaaac
aacagaatcacaatccatggaaaatggctgcagagtactgaggggaatga
gtcaaacctctagggcatcagagcagaacatcccaggtctgtggggtcca
agctctaggccacagctcagcatgttgataggaggcgctcctccattctc
tagtgtgaatccctaggagctccaagtccagggaactggtctctatttca
gattctcagttccctttgtatgctacacgctacaacgtgtaggcttttgc
atgctcaggagcagaatgattacaattgggtatcggctgatactgtggtc
tataatttcccccaatagtatcttttcagagctggtatctgtgttcattg
atcaattagtcttctttatttgacagtcaccttgggaaagtaaaatgaga
gagtttagtacttagttatttagaaacttgagttattctgcataactcat
aaaccacaaaaaacttggcaatgttttattaggatattaaataattgatt
gcttattgtcattatttcataattagattttggacccctggagcaagtaa
ttgctttcatcattgggtacagttaggaatttctttatcactccatcata
taaactaccatgacagactgagtaaaaggcagctcatagatactgggaca
ttgtattatacataattctgcatgagccaacctcctgagtgtcagtgtat
ctctagcttggttcaagtcaacagcttatacaggtaacaaggtggcacgc
cctcctgggagcaggttaaacgagactacaagtctgtctcactggcagac
ttctattggcttttgttgtgccacattgatgaagtaactaactatatgca
gaaactgagaaagcaaggtactgtgggggggaattgtctggatgaagggt
agacagctttgatatcctcagttctaaaagtatccatgacgactcatgcc
gtaacaggactatagccactaagaaggataagatgaagtgtcatgcctca
ggaacagagcactaattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49339306_49339767
seq2: B6Ng01-323L16.b_44_501

seq1  GAATTCCTTGTTATATGTAGTACTCACCTCCTTTCTGCTATTAGAATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTTATATGTAGTACTCACCTCCTTTCTGCTATTAGAATTCT  50

seq1  AATTTCTTATTCTTCTTTAAACCTCTCAACTTTTTAATATAAGGTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTATTCTTCTTTAAACCTCTCAACTTTTTAATATAAGGTTATAG  100

seq1  ATTTCTATTAAACTCTTTTTTCTCATGCTTAAATTACTTTGTTTGAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTATTAAACTCTTTTTTCTCATGCTTAAATTACTTTGTTTGAATTA  150

seq1  CTAATTATATCCTATCTGCCTTGCCAATGATAAATCTTGTATTCTTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATATCCTATCTGCCTTGCCAATGATAAATCTTGTATTCTTTTTA  200

seq1  TATGTTAGTCATTAAAGCATTTCAATTGTTAAAACTAAATATTACAGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGTCATTAAAGCATTTCAATTGTTAAAACTAAATATTACAGTTG  250

seq1  ATTAGAGAACATATTTCTTCACAGATACTTTCGAATTCTACCAACCTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGAACATATTTCTTCACAGATACTTTCGAATTCTACCAACCTTAG  300

seq1  AGGTCAATCTGAGATCTTAACTCCTCATAATATAATGTACAAGACGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAATCTGAGATCTTAACTCCTCATAATATAATGTACAAGACGTTGG  350

seq1  ACATGTTTTTAGTCTTTAAAATGTTTCATTTAATTAAGTTATTTATTTAT  400
      ||||||||||||||||||||||||||||||||||||||    ||||||||
seq2  ACATGTTTTTAGTCTTTAAAATGTTTCATTTAATTAAG----TTATTTAT  396

seq1  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGAGTG  446

seq1  TGTGTGTGTGTG  462
      ||||||||||||
seq2  TGTGTGTGTGTG  458

seq1: chr3_49509474_49510544
seq2: B6Ng01-323L16.g_67_1135 (reverse)

seq1  ACAATTAGTGCTCTGTTCCTTGAGCATGACCACCTCCTCTTATCTTTCTT  50
      ||||||||||||||||||||   |||||| ||| || ||||||| ||| |
seq2  ACAATTAGTGCTCTGTTCCTGAGGCATGA-CACTTCATCTTATCCTTC-T  48

seq1  TAGTTGCCTATAGTTCCTGTTTATGGATGAGTCTTCATGGGTTATTTTTG  100
      ||| || |||||| |||||||   | ||||||| |||||| |  |||| |
seq2  TAG-TGGCTATAG-TCCTGTTACGGCATGAGTCGTCATGGATACTTTTAG  96

seq1  AACTGAGGATATCAAAGCTGTCCTACCTTCATCCAGACA--TTCCCCCCA  148
      ||||||||||||||||||||||   ||||||||||||||  | |||||||
seq2  AACTGAGGATATCAAAGCTGTCTACCCTTCATCCAGACAATTCCCCCCCA  146

seq1  CAGTACCTTGCTTTCTCAGTTTCTGCATATAGTTAGTTACTTCATCAATG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCTTGCTTTCTCAGTTTCTGCATATAGTTAGTTACTTCATCAATG  196

seq1  T-GCACAACAAAAGCCAATAGAAAGTCTGCCAGTGAGACAGACTTGTAGT  247
      | ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGCACAACAAAAGCCAATAG-AAGTCTGCCAGTGAGACAGACTTGTAGT  245

seq1  CTCGTTTAACCTGCTCCCAGGAGGGCGTGCCACCTTGTTACCTGTATAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTAACCTGCTCCCAGGAGGGCGTGCCACCTTGTTACCTGTATAAG  295

seq1  CTGTTGACTTGAACCAAGCTAGAGATACACTGACACTCAGGAGGTTGGCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGACTTGAACCAAGCTAGAGATACACTGACACTCAGGAGGTTGGCT  345

seq1  CATGCAGAATTATGTATAATACAATGTCCCAGTATCTATGAGCTGCCTTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGAATTATGTATAATACAATGTCCCAGTATCTATGAGCTGCCTTT  395

seq1  TACTCAGTCTGTCATGGTAGTTTATATGATGGAGTGATAAAGAAATTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGTCTGTCATGGTAGTTTATATGATGGAGTGATAAAGAAATTCCT  445

seq1  AACTGTACCCAATGATGAAAGCAATTACTTGCTCCAGGGGTCCAAAATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTACCCAATGATGAAAGCAATTACTTGCTCCAGGGGTCCAAAATCT  495

seq1  AATTATGAAATAATGACAATAAGCAATCAATTATTTAATATCCTAATAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAAATAATGACAATAAGCAATCAATTATTTAATATCCTAATAAA  545

seq1  ACATTGCCAAGTTTTTTGTGGTTTATGAGTTATGCAGAATAACTCAAGTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCAAGTTTTTTGTGGTTTATGAGTTATGCAGAATAACTCAAGTT  595

seq1  TCTAAATAACTAAGTACTAAACTCTCTCATTTTACTTTCCCAAGGTGACT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAACTAAGTACTAAACTCTCTCATTTTACTTTCCCAAGGTGACT  645

seq1  GTCAAATAAAGAAGACTAATTGATCAATGAACACAGATACCAGCTCTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAAAGAAGACTAATTGATCAATGAACACAGATACCAGCTCTGAA  695

seq1  AAGATACTATTGGGGGAAATTATAGACCACAGTATCAGCCGATACCCAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACTATTGGGGGAAATTATAGACCACAGTATCAGCCGATACCCAAT  745

seq1  TGTAATCATTCTGCTCCTGAGCATGCAAAAGCCTACACGTTGTAGCGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCATTCTGCTCCTGAGCATGCAAAAGCCTACACGTTGTAGCGTGT  795

seq1  AGCATACAAAGGGAACTGAGAATCTGAAATAGAGACCAGTTCCCTGGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACAAAGGGAACTGAGAATCTGAAATAGAGACCAGTTCCCTGGACT  845

seq1  TGGAGCTCCTAGGGATTCACACTAGAGAATGGAGGAGCGCCTCCTATCAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCCTAGGGATTCACACTAGAGAATGGAGGAGCGCCTCCTATCAA  895

seq1  CATGCTGAGCTGTGGCCTAGAGCTTGGACCCCACAGACCTGGGATGTTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGAGCTGTGGCCTAGAGCTTGGACCCCACAGACCTGGGATGTTCT  945

seq1  GCTCTGATGCCCTAGAGGTTTGACTCATTCCCCTCAGTACTCTGCAGCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATGCCCTAGAGGTTTGACTCATTCCCCTCAGTACTCTGCAGCCA  995

seq1  TTTTCCATGGATTGTGATTCTGTTGTTTCTAAGTATCCTTCAGAAGGCCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATGGATTGTGATTCTGTTGTTTCTAAGTATCCTTCAGAAGGCCA  1045

seq1  ATTCTCACATAGGCAAGTGAATTC  1071
      ||||||||||||||||||||||||
seq2  ATTCTCACATAGGCAAGTGAATTC  1069