BAC Information

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BAC

Clone NameB6Ng01-324I12
Chromosome3 (Build37)
Map Location 156,910,283 - 157,022,397
singlet/doubletdoublet
Overlap geneNegr1
Upstream geneLOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324I12.bB6Ng01-324I12.g
ACCGA112821GA112822
length1,1721,169
definitionB6Ng01-324I12.b B6Ng01-324I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,021,220 - 157,022,397)(156,910,283 - 156,911,445)
sequence
gaattcttagaaagtgtatgactttttaaaaatggtattttaatgagaca
ttctgtaaaacgtctttctgtgatttctcttttccttttatttcctttcc
tccccactctacttttccttctttcctgttcttgtctctttacttacttt
ttaacagatttatttttaatttcgtatatgtgtttgggcatgtgtgtaca
tgagtgcagtacccacagaagccagaggagggtgtcagatccctcggagc
tggagtatatatcgcctaggatgggtgttgggaaacaaaggtaggtcctt
tgcaagagcagagcatgctcctaacagccagcacatcttttgagtctctt
atttcatgttttaaataagattcttggcatgaagcccaggctggaagggc
caggaactcatgagtctcctgttaagcttcagatttccatgttctcatgc
ctgggtagggttgttagagggggagcttagaagtggccagtccaagtgca
aaagggaaaaagtctgagatgaagtccacagtgaccttttatgtgtcaat
acagtcctcactttttcaaagttcctatacctatccccctacccacccca
ctccagcttttcagcttctcctttagctggatacccttcgtgctggagtt
gcatgtgtagcattgtttcatttaactttttcgctcttcaagcgtttgct
gaggcctcacattttctaggcaccatgagcagaactcagttaaaaacaaa
caagcaaaataaaaccacccttttgttctatgtcaaaagctacaagtgaa
gtaattttcctgtcaaaatcgtgtgagattttaacttccttctgtctgtt
tttcttgctgaaatactttatcataaacatatttacacttttgacaaaag
aaaataggtttaattctcactactgacaactctagagcgacttccaagct
tgggtttgtttgcttatggctgctcagcttcacagcatgctcagctctgc
agggaagtatcttgtcttcagtcctacacaccaccccttgtattattctg
tctctttcttttccatctttgctgagactcaccttgctgagaacactttc
atcgacagaacattgagtcggtcctacaatacattgatccctggtcttta
ctaaaaccataacagctcacaa
gaattcctgattttcctctctaggctgctactatttcttcccaaaactat
aatttgttcttattcctagaaaaacttgatatttgggggaaaatatttta
ttttcagtaactttaaaaatgtaagagtttctaatgcttagattcttcct
ctggccacttctgtctctgaagagtgaggccaatcaaggctcttacctct
gcaaagcctcctttctacttgagacactcaggtaagcttagtcgctgtct
tagtcagggtttctattcctgcacaaacatcatgaccaagaagcaaattg
gggaagaaagggtttattcagcttacacttccatactgctgttcatcacc
aaaggaagtcaggactggaactcaagccggtcagaaagcaggagctgatg
cagaggccatggagggatgttcttcactggcttgcttcccctggcttgct
cagcctgctctcttatagaacccaagactcccagaccagagatggtccca
cccacaaggggcctttcccccttgatcactaattgagaaaatgccttaca
gttggatctcatggaggcatttcttcaactgaagctcctttctctgtgat
aactccagctgtgtcaagttgacacaaaactagccagtaaagttgctctt
ctggccaatttctgcacatcactgtgtctcacagcacagtagggttaaag
gtgactaaagattttagggagtgtatagttttggatgcaataatttaaaa
tccactgttagtattggaagtattattatattgttaatcccctgtgttag
cttgtgggttgtttctgggggtttcagaaaatataggagtttagtacatt
ggattttatagttagcatttagacacaaaaacaaatgctgaaatgtctct
ttgtgtctcaacaggccttagacactgttcccaggtgaatcaagtcttgt
tctatgatagattgtcagatgatcccagtgttccagagtcctgaggtagg
gcgaccacaagatggaagctcagtctttggacacacagcaagaacactgt
ctttaattaacaaaagcagcattttactggtggaaccacctgaatctggc
aggctagttactccataacacttagctggtttgaacctcgatgtctggtc
tcctctttttgacagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157021220_157022397
seq2: B6Ng01-324I12.b_48_1219 (reverse)

seq1  TTGTG-GCTGTTATTGGTGTCTAGTTAAAAGACAAGGGGATCAATGTATT  49
      ||||| ||||||| |||| | ||||  |||||| | ||||||||||||||
seq2  TTGTGAGCTGTTA-TGGT-TTTAGT--AAAGACCA-GGGATCAATGTATT  45

seq1  GTAGACCCCGACTCCATG-TCTGTCGATGAAGTTGTCTTCAGCCAGGTGA  98
      ||||   ||||||| ||| ||||||||||||  |||  ||||| ||||||
seq2  GTAG-GACCGACTCAATGTTCTGTCGATGAAAGTGTTCTCAGCAAGGTGA  94

seq1  GTTCTCAGCAAAGATGGAAAAGAAAGAGACAGAATAATACAAGGGGTGGT  148
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-TCTCAGCAAAGATGGAAAAGAAAGAGACAGAATAATACAAGGGGTGGT  143

seq1  GTGTAGGACTGAAGACAAGATACTTCCCTGCAGAGCTGAGCATGCTGTGA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGACTGAAGACAAGATACTTCCCTGCAGAGCTGAGCATGCTGTGA  193

seq1  AGCTGAGCAGCCATAAGCAAACAAACCCAAGCCTTGGAAGTCGCTCTAGA  248
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AGCTGAGCAGCCATAAGCAAACAAACCCAAG-CTTGGAAGTCGCTCTAGA  242

seq1  GTTGTCAGTAGTGAGAATTAAACCTATTTTCTTTTGTCAAAAGTGTAAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAGTAGTGAGAATTAAACCTATTTTCTTTTGTCAAAAGTGTAAAT  292

seq1  ATGTTTATGATAAAGTATTTCAGCAAGAAAAACAGACAGAAGGAAGTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATGATAAAGTATTTCAGCAAGAAAAACAGACAGAAGGAAGTTAA  342

seq1  AATCTCACACGATTTTGACAGGAAAATTACTTCACTTGTAGCTTTTGACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCACACGATTTTGACAGGAAAATTACTTCACTTGTAGCTTTTGACA  392

seq1  TAGAACAAAAGGGTGGTTTTATTTTGCTTGTTTGTTTTTAACTGAGTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAAAAGGGTGGTTTTATTTTGCTTGTTTGTTTTTAACTGAGTTCT  442

seq1  GCTCATGGTGCCTAGAAAATGTGAGGCCTCAGCAAACGCTTGAAGAGCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGTGCCTAGAAAATGTGAGGCCTCAGCAAACGCTTGAAGAGCGA  492

seq1  AAAAGTTAAATGAAACAATGCTACACATGCAACTCCAGCACGAAGGGTAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTAAATGAAACAATGCTACACATGCAACTCCAGCACGAAGGGTAT  542

seq1  CCAGCTAAAGGAGAAGCTGAAAAGCTGGAGTGGGGTGGGTAGGGGGATAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAAAGGAGAAGCTGAAAAGCTGGAGTGGGGTGGGTAGGGGGATAG  592

seq1  GTATAGGAACTTTGAAAAAGTGAGGACTGTATTGACACATAAAAGGTCAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGGAACTTTGAAAAAGTGAGGACTGTATTGACACATAAAAGGTCAC  642

seq1  TGTGGACTTCATCTCAGACTTTTTCCCTTTTGCACTTGGACTGGCCACTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTTCATCTCAGACTTTTTCCCTTTTGCACTTGGACTGGCCACTT  692

seq1  CTAAGCTCCCCCTCTAACAACCCTACCCAGGCATGAGAACATGGAAATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCTCCCCCTCTAACAACCCTACCCAGGCATGAGAACATGGAAATCT  742

seq1  GAAGCTTAACAGGAGACTCATGAGTTCCTGGCCCTTCCAGCCTGGGCTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTAACAGGAGACTCATGAGTTCCTGGCCCTTCCAGCCTGGGCTTC  792

seq1  ATGCCAAGAATCTTATTTAAAACATGAAATAAGAGACTCAAAAGATGTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGAATCTTATTTAAAACATGAAATAAGAGACTCAAAAGATGTGC  842

seq1  TGGCTGTTAGGAGCATGCTCTGCTCTTGCAAAGGACCTACCTTTGTTTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTTAGGAGCATGCTCTGCTCTTGCAAAGGACCTACCTTTGTTTCC  892

seq1  CAACACCCATCCTAGGCGATATATACTCCAGCTCCGAGGGATCTGACACC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACCCATCCTAGGCGATATATACTCCAGCTCCGAGGGATCTGACACC  942

seq1  CTCCTCTGGCTTCTGTGGGTACTGCACTCATGTACACACATGCCCAAACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGGCTTCTGTGGGTACTGCACTCATGTACACACATGCCCAAACA  992

seq1  CATATACGAAATTAAAAATAAATCTGTTAAAAAGTAAGTAAAGAGACAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACGAAATTAAAAATAAATCTGTTAAAAAGTAAGTAAAGAGACAAG  1042

seq1  AACAGGAAAGAAGGAAAAGTAGAGTGGGGAGGAAAGGAAATAAAAGGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAAAGAAGGAAAAGTAGAGTGGGGAGGAAAGGAAATAAAAGGAAA  1092

seq1  AGAGAAATCACAGAAAGACGTTTTACAGAATGTCTCATTAAAATACCATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATCACAGAAAGACGTTTTACAGAATGTCTCATTAAAATACCATT  1142

seq1  TTTAAAAAGTCATACACTTTCTAAGAATTC  1178
      ||||||||||||||||||||||||||||||
seq2  TTTAAAAAGTCATACACTTTCTAAGAATTC  1172

seq1: chr3_156910283_156911445
seq2: B6Ng01-324I12.g_68_1236

seq1  GAATTCCTGATTTTCCTCTCTAGGCTGCTACTATTTCTTCCCAAAACTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATTTTCCTCTCTAGGCTGCTACTATTTCTTCCCAAAACTAT  50

seq1  AATTTGTTCTTATTCCTAGAAAAACTTGATATTTGGGGGAAAATATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTCTTATTCCTAGAAAAACTTGATATTTGGGGGAAAATATTTTA  100

seq1  TTTTCAGTAACTTTAAAAATGTAAGAGTTTCTAATGCTTAGATTCTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTAACTTTAAAAATGTAAGAGTTTCTAATGCTTAGATTCTTCCT  150

seq1  CTGGCCACTTCTGTCTCTGAAGAGTGAGGCCAATCAAGGCTCTTACCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACTTCTGTCTCTGAAGAGTGAGGCCAATCAAGGCTCTTACCTCT  200

seq1  GCAAAGCCTCCTTTCTACTTGAGACACTCAGGTAAGCTTAGTCGCTGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCTCCTTTCTACTTGAGACACTCAGGTAAGCTTAGTCGCTGTCT  250

seq1  TAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGGGTTTCTATTCCTGCACAAACATCATGACCAAGAAGCAAATTG  300

seq1  GGGAAGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAAGGGTTTATTCAGCTTACACTTCCATACTGCTGTTCATCACC  350

seq1  AAAGGAAGTCAGGACTGGAACTCAAGCCGGTCAGAAAGCAGGAGCTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGTCAGGACTGGAACTCAAGCCGGTCAGAAAGCAGGAGCTGATG  400

seq1  CAGAGGCCATGGAGGGATGTTCTTCACTGGCTTGCTTCCCCTGGCTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCATGGAGGGATGTTCTTCACTGGCTTGCTTCCCCTGGCTTGCT  450

seq1  CAGCCTGCTCTCTTATAGAACCCAAGACTCCCAGACCAGAGATGGTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCTCTCTTATAGAACCCAAGACTCCCAGACCAGAGATGGTCCCA  500

seq1  CCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTACA  550

seq1  GTTGGATCTCATGGAGGCATTTCTTCAACTGAAGCTCCTTTCTCTGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCTCATGGAGGCATTTCTTCAACTGAAGCTCCTTTCTCTGTGAT  600

seq1  AACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTAAAGTTGCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGCTGTGTCAAGTTGACACAAAACTAGCCAGTAAAGTTGCTCTT  650

seq1  CTGGCCAATTTCTGCACATCACTGTGTCTCACAGCACAGTAGGGTTAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCAATTTCTGCACATCACTGTGTCTCACAGCACAGTAGGGTTAAAG  700

seq1  GTGACTAAAGATTTTAGGGAGTGTATAGTTTTGGATGCAATAATTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAAGATTTTAGGGAGTGTATAGTTTTGGATGCAATAATTTAAAA  750

seq1  TCCACTGTTAGTATTGGAAGTATTATTATATTGTTAATCCCCTGTGTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTAGTATTGGAAGTATTATTATATTGTTAATCCCCTGTGTTAG  800

seq1  CTTGT-GGTTGTTTCTGGGGGTTTCAGAAAATATAGGAG-TTAGTACATT  848
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTGTGGGTTGTTTCTGGGGGTTTCAGAAAATATAGGAGTTTAGTACATT  850

seq1  TGATTTTATAGTTAGCATTTAGGACAC-AAAACAAATGCTGAAATGTCTC  897
       |||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GGATTTTATAGTTAGCATTTA-GACACAAAAACAAATGCTGAAATGTCTC  899

seq1  TTTGTGTCTCAACAGGCCTTAGACACTG-TCCCAGGTGAATCAAGTCTTG  946
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGTGTCTCAACAGGCCTTAGACACTGTTCCCAGGTGAATCAAGTCTTG  949

seq1  TTCTTATGATAGATTGTCAGAATGATCCCAGTGTTCCAGAGT-CTGAGGT  995
      ||| |||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TTC-TATGATAGATTGTCAG-ATGATCCCAGTGTTCCAGAGTCCTGAGGT  997

seq1  AGGGGGACCACAAGATGGAGGC-CAGTC-TTGGACACACAGCAAG-ACAC  1042
      |||| |||||||||||||| || ||||| |||||||||||||||| ||||
seq2  AGGGCGACCACAAGATGGAAGCTCAGTCTTTGGACACACAGCAAGAACAC  1047

seq1  TGTCTT--AATAAC-AAAGCAGCATTTTAACTGTGGAACCAACTG-ATCT  1088
      ||||||  | |||| ||||||||||||||   ||||||||| ||| ||||
seq2  TGTCTTTAATTAACAAAAGCAGCATTTTACTGGTGGAACCACCTGAATCT  1097

seq1  GCCAGGGGCTAGTAACTCCCATAACACCTTAGGGTGTGTTTGA--CTCGA  1136
      | ||  ||||||| ||| |||||||| |||| | || ||||||  |||| 
seq2  GGCA--GGCTAGTTACT-CCATAACA-CTTA-GCTG-GTTTGAACCTCG-  1140

seq1  ATGTCT-GTCTCCTC-CTTTGACAGTGTG  1163
      |||||| ||||||||  ||||||||||||
seq2  ATGTCTGGTCTCCTCTTTTTGACAGTGTG  1169