BAC Information

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BAC

Clone NameB6Ng01-324L09
Chromosome3 (Build37)
Map Location 26,004,228 - 26,141,608
singlet/doubletdoublet
Overlap geneNlgn1
Upstream geneLOC100039592, LOC621017
Downstream geneLOC229152, Spata16, LOC665258, Ect2, Aadacl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324L09.bB6Ng01-324L09.g
ACCGA112955GA112956
length1,1711,095
definitionB6Ng01-324L09.b B6Ng01-324L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,140,425 - 26,141,608)(26,004,228 - 26,005,327)
sequence
ggaattcacatcttgcctggaatatatgaagccttgtttcaattttttaa
aatgtatttgttgtgtgtatcatgcctgacatggcatacaagaatctaac
tagatgttcccctagaacaaagctttttctagaacctatcctgaagctga
ttctgcagtttttgagacatcttttagaacagtaaatatttcttgagctg
taaaaaaaaaataggactttacttatagagtttatattacatgctgtact
tagtactgaagttttaaacatagtaaatttcttttattcctaaatacaca
cccatgggttgctataacctcattttccaaatgaagaaactgaagttcag
caacattgaatatcagcctcaggtcacacagctgctcagtcacttgcctg
agaattcagtccaggcatgtttatgagatacgaaccagtctttgccttct
ggatgtgttccatatttggcctaagtggtgaagagattcatttgcacatg
ttctctggtacaaagaatataaaacagcttcatttcagtgtctaatagac
aaaaactgtatgacaaagtgcactttgcattcatcagttgcaagagctaa
tgaaattgagattagctatccccaaactactgttcatgttggcctgttga
aaatatatttagactgagtgatatgtgtgagctagtgtacatatgcaata
atattgtaatagtggaggtttttttttaatgttgctaaagctttttttaa
aaatgtttaccatgagctaggcaaatttccaagcatttaaattgcataag
ctcttttatgttaacaacaaaacatgtaactttattactcacatagtata
aagatatattaatcatataatacaaaatactaagatgaaattgaggcaca
gagcgcctaaatattatcataaagtggaaaattcagatcaaaatgacatc
agggatggtggaaagaatatatacagttcaatcagctgggatcatagaaa
taagaaatattcaacacatgaagtataagtgatcattaaaaacaccaggc
catttcttggagattatatttgtacttttatcatttatgataatttctac
atataggaatgcttgcagaatctgtaatagcttctgggtctcctcaggtc
acactgcaggtttctcacact

gaattcacatgccctgagctatcctttggcacaaatgacaatcaagatcc
agagaggtaaaatgactgaatcaaagtcactcagcaactcccaacagagc
caggtaagagagcctgagagccacaggtcttcctgtagatagtctatcca
tccacaggagccatagcacctttccctcaaatggacaatgtttacatcaa
acctcaggttccccaggtggaccaatcatttcctaaagttaataatgctt
ttattgtcagccctttggtgctttttggatgatcaatggaacaaaaaaat
gtaccagaccagcacatcctagggcatagggcatagactgagaggaagaa
acaccacgtgatcttctgcaggagtgaggtagaccaacagcaagctgtgt
attagtgctttccaaaacaattgaggcctccttcttcattcagctgaggt
tccctgggactcacactccctggggtaggaaatgcatttagaagctctat
taactctttcagcataattagtgcactgaagaagtcaattgttcaacgat
ctggaaggcagtgtgcagcttccctaaggcctgcatctgttatagggcag
gaaatatggtaacttgtcgtgtttactaattgggtcagttagtaactttc
ttttttctcttttttttttcagaagtaaagcaataaataattatcctagt
tgaatcatattatgcaaattgaaggcatcttttcaccgttgatacttcca
ggatatttctcaataaatctgcagtccccaaatgctgtaaccctcccgtg
acactacactgtgctaaatcaaccaattatattaacagtcttatgccatc
aacatggtcacctaacacatgtaaacttaaattcatctccctacaatttt
tgaagtgatttcagctctttgcttttccctttattgactgagaaatcttc
gtctactttccaaaatgccagcagcaagtgagcaacctattgttctagct
ttctcagctgtttcactagcactttcaacagcacactgttcattacgtgt
ccctacttgcattttttctcacaaatataacagaattttatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26140425_26141608
seq2: B6Ng01-324L09.b_47_1216 (reverse)

seq1  AGTGTGAGAAACACTGCAGTTGTTGAAACTGGGAAGAGAGACACAGGAGC  50
      |||||||||||| |||||| |||   | ||| |    ||||| ||| |||
seq2  AGTGTGAGAAAC-CTGCAG-TGT--GACCTGAG----GAGACCCAGAAGC  42

seq1  TTATTACAGATTTCTTCCAGCATTCCCTAATATGTAGAAATTATCATAAA  100
       ||||||||| |||| | ||||||||   |||||||||||||||||| ||
seq2  -TATTACAGA-TTCTGCAAGCATTCC--TATATGTAGAAATTATCAT-AA  87

seq1  ATGATTAAAAGTACAAATATAATCTCCAAAGAAATGGCCTGGGTGTTTTT  150
      |||| |||||||||||||||||||||| |||||||||||| |||||||||
seq2  ATGA-TAAAAGTACAAATATAATCTCC-AAGAAATGGCCT-GGTGTTTTT  134

seq1  AATGAATCACTTATACTTCATGTGTTGAATATTTCTTATTTCTATTGAT-  199
      |||| ||||||||||||||||||||||||||||||||||||||| |||| 
seq2  AATG-ATCACTTATACTTCATGTGTTGAATATTTCTTATTTCTA-TGATC  182

seq1  CCAGCTGATTG-ACTGTATATATTC-TTCCA-CATCCCTGATGTCATTTT  246
      ||||||||||| ||||||||||||| ||||| ||||||||||||||||||
seq2  CCAGCTGATTGAACTGTATATATTCTTTCCACCATCCCTGATGTCATTTT  232

seq1  GATCTGAATTTTCCACTTTATGATAATATTTAGGCGCTCTGTGCCTCAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAATTTTCCACTTTATGATAATATTTAGGCGCTCTGTGCCTCAAT  282

seq1  TTCATCTTAGTATTTTGTATTATATGATTAATATATCTTTATACTATGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTAGTATTTTGTATTATATGATTAATATATCTTTATACTATGTG  332

seq1  AGTAATAAAGTTACATGTTTTGTTGTTAACATAAAAGAGCTTATGCAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAAAGTTACATGTTTTGTTGTTAACATAAAAGAGCTTATGCAATT  382

seq1  TAAATGCTTGGAAATTTGCCTAGCTCATGGTAAACATTTTTAAAAAAAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTTGGAAATTTGCCTAGCTCATGGTAAACATTTTTAAAAAAAGC  432

seq1  TTTAGCAACATTAAAAAAAAACCTCCACTATTACAATATTATTGCATATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAACATTAAAAAAAAACCTCCACTATTACAATATTATTGCATATG  482

seq1  TACACTAGCTCACACATATCACTCAGTCTAAATATATTTTCAACAGGCCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGCTCACACATATCACTCAGTCTAAATATATTTTCAACAGGCCA  532

seq1  ACATGAACAGTAGTTTGGGGATAGCTAATCTCAATTTCATTAGCTCTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAACAGTAGTTTGGGGATAGCTAATCTCAATTTCATTAGCTCTTGC  582

seq1  AACTGATGAATGCAAAGTGCACTTTGTCATACAGTTTTTGTCTATTAGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATGAATGCAAAGTGCACTTTGTCATACAGTTTTTGTCTATTAGAC  632

seq1  ACTGAAATGAAGCTGTTTTATATTCTTTGTACCAGAGAACATGTGCAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATGAAGCTGTTTTATATTCTTTGTACCAGAGAACATGTGCAAAT  682

seq1  GAATCTCTTCACCACTTAGGCCAAATATGGAACACATCCAGAAGGCAAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTTCACCACTTAGGCCAAATATGGAACACATCCAGAAGGCAAAG  732

seq1  ACTGGTTCGTATCTCATAAACATGCCTGGACTGAATTCTCAGGCAAGTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCGTATCTCATAAACATGCCTGGACTGAATTCTCAGGCAAGTGA  782

seq1  CTGAGCAGCTGTGTGACCTGAGGCTGATATTCAATGTTGCTGAACTTCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAGCTGTGTGACCTGAGGCTGATATTCAATGTTGCTGAACTTCAG  832

seq1  TTTCTTCATTTGGAAAATGAGGTTATAGCAACCCATGGGTGTGTATTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTTGGAAAATGAGGTTATAGCAACCCATGGGTGTGTATTTAG  882

seq1  GAATAAAAGAAATTTACTATGTTTAAAACTTCAGTACTAAGTACAGCATG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAAGAAATTTACTATGTTTAAAACTTCAGTACTAAGTACAGCATG  932

seq1  TAATATAAACTCTATAAGTAAAGTCCTATTTTTTTTTTACAGCTCAAGAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATAAACTCTATAAGTAAAGTCCTATTTTTTTTTTACAGCTCAAGAA  982

seq1  ATATTTACTGTTCTAAAAGATGTCTCAAAAACTGCAGAATCAGCTTCAGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACTGTTCTAAAAGATGTCTCAAAAACTGCAGAATCAGCTTCAGG  1032

seq1  ATAGGTTCTAGAAAAAGCTTTGTTCTAGGGGAACATCTAGTTAGATTCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTCTAGAAAAAGCTTTGTTCTAGGGGAACATCTAGTTAGATTCTT  1082

seq1  GTATGCCATGTCAGGCATGATACACACAACAAATACATTTTAAAAAATTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCCATGTCAGGCATGATACACACAACAAATACATTTTAAAAAATTG  1132

seq1  AAACAAGGCTTCATATATTCCAGGCAAGATGTGAATTC  1184
      ||||||||||||||||||||||||||||||||||||||
seq2  AAACAAGGCTTCATATATTCCAGGCAAGATGTGAATTC  1170


seq1: chr3_26004228_26005327
seq2: B6Ng01-324L09.g_65_1159

seq1  GAATTCACATGCCCTGAGCTATCCTTTGGCACAAATGACAATCAAGATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATGCCCTGAGCTATCCTTTGGCACAAATGACAATCAAGATCC  50

seq1  AGAGAGGTAAAATGACTGAATCAAAGTCACTCAGCAACTCCCAACAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTAAAATGACTGAATCAAAGTCACTCAGCAACTCCCAACAGAGC  100

seq1  CAGGTAAGAGAGCCTGAGAGCCACAGGTCTTCCTGTAGATAGTCTATCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGAGAGCCTGAGAGCCACAGGTCTTCCTGTAGATAGTCTATCCA  150

seq1  TCCACAGGAGCCATAGCACCTTTCCCTCAAATGGACAATGTTTACATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAGGAGCCATAGCACCTTTCCCTCAAATGGACAATGTTTACATCAA  200

seq1  ACCTCAGGTTCCCCAGGTGGACCAATCATTTCCTAAAGTTAATAATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGGTTCCCCAGGTGGACCAATCATTTCCTAAAGTTAATAATGCTT  250

seq1  TTATTGTCAGCCCTTTGGTGCTTTTTGGATGATCAATGGAACAAAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTCAGCCCTTTGGTGCTTTTTGGATGATCAATGGAACAAAAAAAT  300

seq1  GTACCAGACCAGCACATCCTAGGGCATAGGGCATAGACTGAGAGGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGACCAGCACATCCTAGGGCATAGGGCATAGACTGAGAGGAAGAA  350

seq1  ACACCACGTGATCTTCTGCAGGAGTGAGGTAGACCAACAGCAAGCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACGTGATCTTCTGCAGGAGTGAGGTAGACCAACAGCAAGCTGTGT  400

seq1  ATTAGTGCTTTCCAAAACAATTGAGGCCTCCTTCTTCATTCAGCTGAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGCTTTCCAAAACAATTGAGGCCTCCTTCTTCATTCAGCTGAGGT  450

seq1  TCCCTGGGACTCACACTCCCTGGGGTAGGAAATGCATTTAGAAGCTCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGACTCACACTCCCTGGGGTAGGAAATGCATTTAGAAGCTCTAT  500

seq1  TAACTCTTTCAGCATAATTAGTGCACTGAAGAAGTCAATTGTTCAACGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTCAGCATAATTAGTGCACTGAAGAAGTCAATTGTTCAACGAT  550

seq1  CTGGAAGGCAGTGTGCAGCTTCCCTAAGGCCTGCATCTGTTATAGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGCAGTGTGCAGCTTCCCTAAGGCCTGCATCTGTTATAGGGCAG  600

seq1  GAAATATGGTAACTTGTCGTGTTTACTAATTGGGTCAGTTAGTAACTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGGTAACTTGTCGTGTTTACTAATTGGGTCAGTTAGTAACTTTC  650

seq1  TTTTTTCTCTTTTTTTTTTCAGAAGTAAAGCAATAAATAATTATCCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTTTTTTTTTTCAGAAGTAAAGCAATAAATAATTATCCTAGT  700

seq1  TGAATCATATTATGCAAATTGAAGGCATCTTTTCACCGTTGATACTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCATATTATGCAAATTGAAGGCATCTTTTCACCGTTGATACTTCCA  750

seq1  GGATATTTCTCAATAAATCTGCAGTCCCCAAATGCTGTAACCCTCCCGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTCTCAATAAATCTGCAGTCCCCAAATGCTGTAACCCTCCCGTG  800

seq1  ACACTACACTGTGCTAAATCAACCAATTATATTAACAGTCTTATGCCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACACTGTGCTAAATCAACCAATTATATTAACAGTCTTATGCCATC  850

seq1  AACATGGTCACCTAACACATGTAAACTTAAATTCATCTCCCTACAATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTCACCTAACACATGTAAACTTAAATTCATCTCCCTACAATTTT  900

seq1  TGAAGTGATTTCAGCTCTTTGCTTTTCCCTTTATTGACTGAGAAATCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGATTTCAGCTCTTTGCTTTTCCCTTTATTGACTGAGAAATCTTC  950

seq1  GTCTAC-TTCCAAAATGCCAGCAGCAAAGTGAGCAACCTATTGTTCTAGC  999
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCTACTTTCCAAAATGCCAGCAGC-AAGTGAGCAACCTATTGTTCTAGC  999

seq1  TTTCTCAGCTGTTTCCACTAGCACTTTCAACAGCACACTGTTCCATTTAC  1049
      |||||||||||||| ||||||||||||||||||||||||||| ||||   
seq2  TTTCTCAGCTGTTT-CACTAGCACTTTCAACAGCACACTGTT-CATT--A  1045

seq1  CGTGTTCCCTACTTGCCATTTTTCTTCCACAAATAT-ACAG-ATTTTATG  1097
      |||| |||||||||||  |||||||  ||||||||| |||| ||||||||
seq2  CGTG-TCCCTACTTGCATTTTTTCT--CACAAATATAACAGAATTTTATG  1092

seq1  ATT  1100
      |||
seq2  ATT  1095


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