BAC Information

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BAC

Clone NameB6Ng01-324N19
Chromosome3 (Build37)
Map Location 55,931,819 - 55,932,935
singlet/doubletsinglet
Overlap genenone
Upstream geneSpg20, A730037C10Rik, Sohlh2, Dclk1, Mab21l1, 4933417G07Rik
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-324N19.bB6Ng01-324N19.g
ACCGA113070GA113071
length1,2011,113
definitionB6Ng01-324N19.b B6Ng01-324N19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgctttttggcaagatagccatt
tttacaatgttgatcctgccaatccatgagcatggggagatcttttccat
cttctgagatcttctttaatttctttcttcagagatttgaagtttttatc
atacagatctttcacctcccttagtagagtcacgccaagatattttatat
tatttgtgactatgagaagggtgttggtttccctaattctttctcagcct
gttattctttgtatagaagaaaggcattgacttgtttggagttaatttta
tatccagcctacctcactgaagctgttatccaggcttaggagttctctgg
agattcttagggttcattactatacctcacactacctggcaatgggaagt
tgacgtccctttacaattggaatcccactggaactacctctctgtagatg
c

gaattctcatatctttgaagtggattattgcctattgtcttacttggggt
tttactgctgtgaacagacatcatgaccaagctaactcttataaggacaa
cacttaattagggctggcttactggttaagaggttcagtccattatcatc
aaggcaggaatatggcagcatccaggtaggcatggtgtaggagtggctga
gagttctacatcttcatctgaaggctgatatcagaatactgacttccagg
cagctagattgaggatcttaagcccatgcccacagtgacacacctactcc
aacagggccacaccttctaacagtggcactccctaggtggagcatataca
aatcatctatcacctatcgattttcttttaatattttataatcaaaagcc
catcttgttcagtaacaaatcctgtttccctttcactttattcacatttc
ctgtgactatgtttctattatgagcctaagtcattgcatatccactgtac
acatctggcacacaggatgcagatttgcaatctatcctatttaccaacga
tatatttttaacagataaaatgagcttgttttcactagtatgagtaatac
tccctctcagttaagctaagtcgtttcactttaacacctccagaacaata
tcaggctcaagttcatttattatctgtattgtttttgtttttttcttgtg
gaactcaaaaagacttgtatttctgttgtagcaaacccttttattccagt
actgtcaatcctctccctcaatattccttaaggatgcaactgtggacatt
gttacattaggtagtagctccatttactgtcctccaccttcccaaaacac
tatgttaagacatcgtttctgtctcaaatatcacttttaataattgagtt
tagaccctttccctgtacttttttcccctttgtttggacacatattgtgt
cttcaagttaattcttagatttcagtttagtatgttcaatgttcacacca
tttttaggctgtagttaccaagtctttgttttgtaaacatgtagaaggat
ttccttttccctgccccgcaaacattcaaggctatattcttctgacgttt
ccctttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55931819_55932935
seq2: B6Ng01-324N19.g_67_1179

seq1  GAATTCTCATATCTTTGAAGTGGATTATTGCCTATTGTCTTACTTGGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATATCTTTGAAGTGGATTATTGCCTATTGTCTTACTTGGGGT  50

seq1  TTTACTGCTGTGAACAGACATCATGACCAAGCTAACTCTTATAAGGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGCTGTGAACAGACATCATGACCAAGCTAACTCTTATAAGGACAA  100

seq1  CACTTAATTAGGGCTGGCTTACTGGTTAAGAGGTTCAGTCCATTATCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAATTAGGGCTGGCTTACTGGTTAAGAGGTTCAGTCCATTATCATC  150

seq1  AAGGCAGGAATATGGCAGCATCCAGGTAGGCATGGTGTAGGAGTGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAATATGGCAGCATCCAGGTAGGCATGGTGTAGGAGTGGCTGA  200

seq1  GAGTTCTACATCTTCATCTGAAGGCTGATATCAGAATACTGACTTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTACATCTTCATCTGAAGGCTGATATCAGAATACTGACTTCCAGG  250

seq1  CAGCTAGATTGAGGATCTTAAGCCCATGCCCACAGTGACACACCTACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGATTGAGGATCTTAAGCCCATGCCCACAGTGACACACCTACTCC  300

seq1  AACAGGGCCACACCTTCTAACAGTGGCACTCCCTAGGTGGAGCATATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGCCACACCTTCTAACAGTGGCACTCCCTAGGTGGAGCATATACA  350

seq1  AATCATCTATCACCTATCGATTTTCTTTTAATATTTTATAATCAAAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTATCACCTATCGATTTTCTTTTAATATTTTATAATCAAAAGCC  400

seq1  CATCTTGTTCAGTAACAAATCCTGTTTCCCTTTCACTTTATTCACATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTGTTCAGTAACAAATCCTGTTTCCCTTTCACTTTATTCACATTTC  450

seq1  CTGTGACTATGTTTCTATTATGAGCCTAAGTCATTGCATATCCACTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTATGTTTCTATTATGAGCCTAAGTCATTGCATATCCACTGTAC  500

seq1  ACATCTGGCACACAGGATGCAGATTTGCAATCTATCCTATTTACCAACGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTGGCACACAGGATGCAGATTTGCAATCTATCCTATTTACCAACGA  550

seq1  TATATTTTTAACAGATAAAATGAGCTTGTTTTCACTAGTATGAGTAATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTTAACAGATAAAATGAGCTTGTTTTCACTAGTATGAGTAATAC  600

seq1  TCCCTCTCAGTTAAGCTAAGTCGTTTCACTTTAACACCTCCAGAACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCAGTTAAGCTAAGTCGTTTCACTTTAACACCTCCAGAACAATA  650

seq1  TCAGGCTCAAGTTCATTTATTATCTGTATTGTTTTTGTTTTTTTCTTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCAAGTTCATTTATTATCTGTATTGTTTTTGTTTTTTTCTTGTG  700

seq1  GAACTCAAAAAGACTTGTATTTCTGTTGTAGCAAACCCTTTTATTCCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAAAAAGACTTGTATTTCTGTTGTAGCAAACCCTTTTATTCCAGT  750

seq1  ACTGTCAATCCTCTCCCTCAATATTCCTTAAGGATGCAACTGTGGACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAATCCTCTCCCTCAATATTCCTTAAGGATGCAACTGTGGACATT  800

seq1  GTTACATTAGGTAGTAGCTCCATTTACTGTCCTCCACCTTCCCAAAACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTAGGTAGTAGCTCCATTTACTGTCCTCCACCTTCCCAAAACAC  850

seq1  TATGTTAAGACATCG-TTCTGTCTCAAATATCAC-TTTAATAATTGAGTT  898
      ||||||||||||||| |||||||||||||||||| |||||||||||||||
seq2  TATGTTAAGACATCGTTTCTGTCTCAAATATCACTTTTAATAATTGAGTT  900

seq1  TAGACCCTTTCCCTGTACTTTTTCCCCCTTTGTTGGAACACATATTGTGT  948
      ||||||||||||||||||||||| |||||||||| | |||||||||||||
seq2  TAGACCCTTTCCCTGTACTTTTTTCCCCTTTGTTTGGACACATATTGTGT  950

seq1  CTCAAAGTTAA-TCTTAGATTTCAGTTTAGTATGTTCAATGTTCACCACC  997
      ||  ||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  CTTCAAGTTAATTCTTAGATTTCAGTTTAGTATGTTCAATGTTCA-CACC  999

seq1  AATTTTTAAGCTGTAGTTTACCAAGTCTTTGGTTTTGTAAACATGTAGAA  1047
       ||||||| ||||||| ||||||||||||| |||||||||||||||||||
seq2  -ATTTTTAGGCTGTAG-TTACCAAGTCTTT-GTTTTGTAAACATGTAGAA  1046

seq1  G--ATTCCTTTTCCCTGCCCCCCCGCAAAACAATCAAGGGCTATATTC-T  1094
      |   ||||||||||||||||| |    ||||| |||| |||||||||| |
seq2  GGATTTCCTTTTCCCTGCCCCGC----AAACATTCAA-GGCTATATTCTT  1091

seq1  CTGACATTTTCCTTTTTTTTTTT  1117
      ||||| ||| |||||||||||| 
seq2  CTGACGTTTCCCTTTTTTTTTT-  1113


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