BAC Information

Click to search

BAC

Clone NameB6Ng01-325F04
Chromosome3 (Build37)
Map Location 71,831,282 - 71,831,843
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667377, LOC667385
Downstream geneLOC100041459, 2010204N08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325F04.bB6Ng01-325F04.g
ACCGA113411GA113412
length1,174824
definitionB6Ng01-325F04.b B6Ng01-325F04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taagatacccaagatataagatacaatttcctaaacatatgaaactcaag
aaaaatgaagactgaagtgtgaacagtatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagataa
aaggatggaccatgtagacactagcatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcacacactagcaagattatgctgaaa
ggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaac
atagaagtggatgctcacagtcggctattggatggatcacatgggcccca
atgaaggagctagagaaagtaccaaagaagctaaagggatctgcaaccct
atagtggaacacatatgactaccagtacccgagctcttgactctagctgc
atatgcatcaaagatggcctagtcgcatcactgaagaggagcccatggac
tgccaacttaatatgcccagtccaggggaacgcccagggccaataaaagg
gggagatgggttggataggggaat

gaattcctgatgtttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaatgagatgatcatgtgtttttgtctttg
agtttgtttatataatggattacattgatggattttcgtatattaaacca
tccctgcatccttggaataaaacctacttggtcaggatggatgattgctt
taatgtgttcttggattcggttagcgagaattttattgaggatttttgca
tcgatattcataagagaaattggtctgaagttctctatctttgttggatc
tttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttgg
gtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgga
attagatcttctttgaaggtctgatagaactctgcactaaacccatctgg
tcctgggctttttttggttgggagactattaataactgcttctatttctt
taggtgatatgggactgtttagatggtcaacttgatcctgattcaacttt
ggtacctggtatctttccagaaatttgtccatttcatccaggttttccag
ttttgttgagtatagccttttgtagaaggatctgatggtgttttggattt
tcttcaggatctgttgttatgtctcccttttcagttctgattttgtttaa
tttaggattttgtctctgtgccctttagtgagtctagctaagggtttatc
tatcttgttgattttcttaaagaacccaactcctcgtttggttaatttct
tgaaatagttccttctttgttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71831282_71831843
seq2: B6Ng01-325F04.g_325_893 (reverse)

seq1  GGAAAC-AAGAA-GAACTA-TTCAAAGAATTAACCAAACGAGGAGTT-GG  46
      | |||| ||||| |||||| |||||  |||||||||||||||||||| ||
seq2  GAAAACAAAGAAGGAACTATTTCAAGAAATTAACCAAACGAGGAGTTGGG  50

seq1  TTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA  96
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTAAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAA  100

seq1  AGGGCACAGGGACAAAATCCTAA--TTAACAAAATCAGAAATGAAAAGGG  144
      ||||||||| |||||||||||||  | ||||||||||||| |||||||||
seq2  AGGGCACAGAGACAAAATCCTAAATTAAACAAAATCAGAACTGAAAAGGG  150

seq1  AGACATAACAACAGATCCTGAAG-AAATCCAAAACACCATCAGATCCTTC  193
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGACATAACAACAGATCCTGAAGAAAATCCAAAACACCATCAGATCCTTC  200

seq1  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGACAA  250

seq1  ATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC  293
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGGAAAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACC  300

seq1  ATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGT  350

seq1  CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTA  400

seq1  TCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACA  450

seq1  AAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATT  500

seq1  ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAG  550

seq1  ACCAATTTCTCTTATGAAT  562
      |||||||||||||||||||
seq2  ACCAATTTCTCTTATGAAT  569


| Home | SequenceCutter | Blast | Download |