BAC Information

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BAC

Clone NameB6Ng01-325G05
Chromosome3 (Build37)1 (Build37)
Map Location 66,209,734 - 66,210,840169,319,266 - 169,319,740
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
Downstream geneLOC625115, Shox2, Rsrc1, Mlf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325G05.bB6Ng01-325G05.g
ACCGA113459GA113460
length1,100983
definitionB6Ng01-325G05.b B6Ng01-325G05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,209,734 - 66,210,840)(169,319,266 - 169,319,740)
sequence
gaattctctgcttgtgggtgggcctggctggctgcccagtactatgctga
atgggttgtgttttctgcctaggtgttgggtggcagcttgccagtcctcg
gaaacttccaggtgaatcacgatgagaaaggaaccacaaacatggctgtt
tctaacccgccttcccacctctctgcacatgtgcgaacatgaaattttct
gataagatatttctcatgacaaatgtccactctcgcttctctgaactctg
aggttgagccctggttgtgttgcttcaagtaaatcaatgaaggtttgggg
gcacagagttctctgttctgtttttattaaaaacacatgccactgtcctg
cacagagtcacacacgtctaataagaaaggaactaaactaatgagttttg
ttttgtttgtttgttcgataacatttattatgactgtctctgaaaacaaa
ttccctaagagtcatagggctttctgctgccttctggggtcaaatacaga
gaagaggcatcagattccctgatgaggccctcaaagatttagcggctacc
atccgttcctcacgaagtcttcactgtagctcaggtgtggtgaggggcag
ctcctggcatcttgggaacccattttcttgattagcggttttcttttcat
ggtctccattttcttggattcatcagtggaagcaaaatttagggactaaa
acaaaaatcaacactgtgactgccctacactcgtcttttctgtctgtaag
gcggtcccagatcccatcactatacagatgaagaaattagaaccgggaag
gtggctgactaatagaaggttcccaccagggtctccagggatagtcttcc
agccctgtctcatggctttgccaatgctatgctacacagcatcacagctc
cgttctttggttgttcaaacagaaataaggaggattgtagaaggggtctt
gggtgatcactggctcctctatgcttagagctaggaactctgtattgaat
gaaaccttttgtttctaagggaaataactagtacttgagaatgactacga
tggtcgtctggtcgtttggggcgttttataatgaatgcctccgactggtg


gaattcagaagaccagaaagccaatagaagagcaaatattaaagtctgta
ctcaggttttaaatgggactctactggaaagcagaatagcgactagttct
gttatagtctggcaaaaactctggctatattttgcttgtattttgaaatt
ttgagtgaggctgaataaaaattataatggggggtatggtggacttttgg
tatagcattggaaatgtaaatgagctaaatacctaataaaaaatggaaaa
aaattataatgggccaggttattggacagagaaaggtaaaagcaacatga
ccagtagattgtggcatggctactgctagctcctcttaggcaggcttaca
gtatgaaccagaagcaaaagaatgaagcaggaacacatgaaaaagatgca
gtttggacagaaaaaaaatatataaatttgcagacaaaacaatgtacagg
cagaattgccattgttgttcaagaaattagcacagtttttttttttatac
ttactttttttttttacatgagtgttctgtctttttttttttcccccccg
agacagggcttctctgtatagctctggctgtcctggaactcactttgtag
accaggctggccttgaactcagaaatccacctgcctctgcctcccacgtg
ctgggattaaaggcatgagctaccactgtccagctagcacagttttaaaa
aagaagccacacagctttgtactgagacaacatcaaaggtgcctgagggt
gagattccaatggtcaaaggctctagggcttgtactcacttgaaagactt
tcctttaaaaagagagtgtgttaattgagtctgtagggcatatcactggg
gaattaagcagctgaattccctaaactcatctccaccccagaacattgca
gggacttctgcagccttgggcaagccagcagagaacgtggaaccattctg
tgctgttactggtttttacgagaataaagaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_66209734_66210840
seq2: B6Ng01-325G05.b_46_1145

seq1  GAATTCTCTGCTTGTGGGTGGGCCTGGCTGGCTGCCCAGTACTATGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTTGTGGGTGGGCCTGGCTGGCTGCCCAGTACTATGCTGA  50

seq1  ATGGGTTGTGTTTTCTGCCTAGGTGTTGGGTGGCAGCTTGCCAGTCCTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTGTGTTTTCTGCCTAGGTGTTGGGTGGCAGCTTGCCAGTCCTCG  100

seq1  GAAACTTCCAGGTGAATCACGATGAGAAAGGAACCACAAACATGGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTTCCAGGTGAATCACGATGAGAAAGGAACCACAAACATGGCTGTT  150

seq1  TCTAACCCGCCTTCCCACCTCTCTGCACATGTGCGAACATGAAATTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCGCCTTCCCACCTCTCTGCACATGTGCGAACATGAAATTTTCT  200

seq1  GATAAGATATTTCTCATGACAAATGTCCACTCTCGCTTCTCTGAACTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGATATTTCTCATGACAAATGTCCACTCTCGCTTCTCTGAACTCTG  250

seq1  AGGTTGAGCCCTGGTTGTGTTGCTTCAAGTAAATCAATGAAGGTTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGCCCTGGTTGTGTTGCTTCAAGTAAATCAATGAAGGTTTGGGG  300

seq1  GCACAGAGTTCTCTGTTCTGTTTTTATTAAAAACACATGCCACTGTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGTTCTCTGTTCTGTTTTTATTAAAAACACATGCCACTGTCCTG  350

seq1  CACAGAGTCACACACGTCTAATAAGAAAGGAACTAAACTAATGAGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTCACACACGTCTAATAAGAAAGGAACTAAACTAATGAGTTTTG  400

seq1  TTTTGTTTGTTTGTTCGATAACATTTATTATGACTGTCTCTGAAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTGTTCGATAACATTTATTATGACTGTCTCTGAAAACAAA  450

seq1  TTCCCTAAGAGTCATAGGGCTTTCTGCTGCCTTCTGGGGTCAAATACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAGAGTCATAGGGCTTTCTGCTGCCTTCTGGGGTCAAATACAGA  500

seq1  GAAGAGGCATCAGATTCCCTGATGAGGCCCTCAAAGATTTAGCGGCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCATCAGATTCCCTGATGAGGCCCTCAAAGATTTAGCGGCTACC  550

seq1  ATCCGTTCCTCACGAAGTCTTCACTGTAGCTCAGGTGTGGTGAGGGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTCCTCACGAAGTCTTCACTGTAGCTCAGGTGTGGTGAGGGGCAG  600

seq1  CTCCTGGCATCTTGGGAACCCATTTTCTTGATTAGCGGTTTTCTTTTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCATCTTGGGAACCCATTTTCTTGATTAGCGGTTTTCTTTTCAT  650

seq1  GGTCTCCATTTTCTTGGATTCATCAGTGGAAGCAAAATTTAGGGACTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCATTTTCTTGGATTCATCAGTGGAAGCAAAATTTAGGGACTAAA  700

seq1  ACAAAAATCAACACTGTGACTGCCCTACACTCGTCTTTTCTGTCTGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCAACACTGTGACTGCCCTACACTCGTCTTTTCTGTCTGTAAG  750

seq1  GCGGTCCCAGATCCCATCACTATACAGATGAAGAAATTAGAACCGGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCCCAGATCCCATCACTATACAGATGAAGAAATTAGAACCGGGAAG  800

seq1  GTGGCTGACTAATAGAAGGTTCCCACCAGGGTCTCCAGGGATAGTCTTCC  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGGCTGACTAATAGAAGGTTCCCACCAGGGTCTCCAGGGATAGTCTT-C  849

seq1  CAGCCCTGTCTCATGGCTTTGCCAATGCTATGCTACACAGCATCACAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTGTCTCATGGCTTTGCCAATGCTATGCTACACAGCATCACAGCT  899

seq1  CCGTTCTTTGGTTGTTTCAAACAGAAATAAGGGAGGATTGTAGGAAGGGG  950
      |||||||||||||| ||||||||||||||| ||||||||||||  | |||
seq2  CCGTTCTTTGGTTG-TTCAAACAGAAATAA-GGAGGATTGTAG--AAGGG  945

seq1  GTCTTGGGTGATCACTGGCTCTCCTATGCTTAGAGCTAGGAACTCTGTAT  1000
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  GTCTTGGGTGATCACTGGCTCCTCTATGCTTAGAGCTAGGAACTCTGTAT  995

seq1  TGAATGAAACCTTTTGTTTCTAAGGGGAAATTAACTAGTACTTGGGAATG  1050
      ||||||||||||||||||||||||||  || ||||||||||||| |||||
seq2  TGAATGAAACCTTTTGTTTCTAAGGG--AAATAACTAGTACTTGAGAATG  1043

seq1  ACTACGATGGTCGTCATGGTCGTTT-GGGCG-TTTATAATTGAATGCCTC  1098
      ||||||||||||||| ||||||||| ||||| ||||||| ||||||||||
seq2  ACTACGATGGTCGTC-TGGTCGTTTGGGGCGTTTTATAA-TGAATGCCTC  1091

seq1  AGACTGGTG  1107
       ||||||||
seq2  CGACTGGTG  1100


seq1: chr1_169319266_169319740
seq2: B6Ng01-325G05.g_551_728

seq1  AGTTTTTTTTTTTTTAAAGAGACCCTCCATGCTTAAAGTTCCATGGGCTG  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGATACCCTGACACCTGACTTTGAATCCTTGGGTCATACTAGATATCCTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GAGGTGTGCCCTCCAGGACACAGGACTCTCTAGACGCATCTCACATCTTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCTAGTGGTTTGGAGGCAGCCGCCTCAGATGAGAAAGGAGAGGTATCA  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAATACAGTTGGGGGGGGGGGGAAGACACCAAAGCACTTGTCAGATGA  250
                                                       |
seq2  -------------------------------------------------A  1

seq1  AGTAGATTTGATAAACTCAGTTCAGGAGAAAGCATTTGACCCAGAGGACT  300
        |   |||  || ||| | ||            |||            |
seq2  GTTTTTTTTTTTATACTTACTT------------TTT-----------TT  28

seq1  GCTTACGTCCAGTCCCACCTCCCACTCCCTCAGATTCCTTCCTTCCCTTT  350
        |||| |                        || |  |||  ||  |||
seq2  TTTTACAT------------------------GAGT-GTTCTGTCTTTTT  53

seq1  TTTTTTTCCCCCAGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGG  400
      |||||| ||||| ||||||||| |||||||| |||| |||||||||||||
seq2  TTTTTTCCCCCCCGAGACAGGGCTTCTCTGTATAGCTCTGGCTGTCCTGG  103

seq1  GACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCT  450
       ||||||| |||||||||||||||||| |||||||||||||| |||||||
seq2  AACTCACTTTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCT  153

seq1  CTGCCTCCCAGGTGCTGGGATTAAA  475
      |||||||||| ||||||||||||||
seq2  CTGCCTCCCACGTGCTGGGATTAAA  178


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