BAC Information

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BAC

Clone NameB6Ng01-325N19
Chromosome3 (Build37)
Map Location 44,738,526 - 44,739,452
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325N19.bB6Ng01-325N19.g
ACCGA113812GA113813
length956996
definitionB6Ng01-325N19.b B6Ng01-325N19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcactctgtagatgaggctagcctcaaactcagaaatccgcctacc
tctgcctcccaagtgagcgattaaaggcatgagccaccactgcctgaata
aggattgttttattgtctgatcatatagtcaattttgaaaagggttgtgt
aaggtgctgagaaaaaaagtttgtttgtttgtttgtttgttttgttttgt
tttgtttttaatttgagtgagaaggtatgaagataactccatttagttca
aaattttgttgcattcattgtgtctccatttagtttcaattttgatgaca
tatccattggtggtgagagtgatgtgttaaagtatcccatcattattgta
tggggttctatgtgtgttttcagctttagtaaagtttcttttataaacat
agctgtgcttgcaattggggcatagatgttcagaattgagaattcatctt
ggtgggtttttcctttgatgagtatgaaatgcccttcttcatctctttta
attacttttggttaaaagtctaatttatacaatatttgaattgttacttt
gtagggcagtgagctacgcacagacaacctggtttccactccagcatagg
tcttgaatccggggagacctatgtgggacaaaagatgttcaatcttgtct
cctggacccctggcttgttactgcccccacagcccccgcaggagaggtaa
gtaactctcagtcacacagacaatgtctcaagctcctggcattctggcta
gactccacccccacagttacctgactatagccaggtatgctcctccccac
aattacctgatagcccagcccactataaaagggactgctcggccccttct
cgctctctttaagctctcaccctttcttactcttctctctagccctcctt
ctctctctctctcctttccccccgtctatccacgtggccatggctggcct
ctctct
gaattcctgctgttttatacagacaaacaattaattattcccatgtagaa
gactcacttgtcaccaggaacagacaccattttcctctttcaatgcttct
atttaaactagattttgataacctcaattttattctttagagaaattcta
aaacaattaaagattacaggagttttcttttgtctcagcttgaccttgcg
tcatgctcagaagataaaaacgtgtataggggaggtgtcctttggttcac
ctaattaccagggtgacagtagctttccattaaagtatcttctcagaatc
tactcagcaatgtaaaaagggggcagaattttgatttgcatattgtacaa
tttctttcatttttattatgtggaaaaactattcatgttcatagttaggg
tttcattgagattgcctcaggcaatttttgttgctttgtttccagatgtt
tctatatgattaaggtagaaaatcaaataaaattataattaaagatcatg
ttattttgctataagggatgaaattaacttttattttaaaatccatttag
aaataaagcaaaaaaaaaataggtccaaaatataaacttgggccataaaa
taattttaatttggcattaatggatttatagacaccataggtttgggttc
tagaaatccaggatgatttctaacctgacatttcttaaactgttgcagaa
acagatggggggtgtattaaattcattttgtgaatcaatatttacagatt
cacaatattatactgctaatattataagaaaggatacttaaacaaataag
aaaacttcagacaaacttacctgatgacatgagatgcagaaattttcaac
caaacacatccaaactcaactataaaatatattcactactttgtgcatca
tgtgcaaagagattttattccagaattcaaagatcaacatgtgcaaatca
atagatgttgatcaacataacaatgggagttaatgtcccaagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44738526_44739452
seq2: B6Ng01-325N19.g_70_996 (reverse)

seq1  AATTCTGGAATAAAATCTCTTTGCACATGATGCACAAAGTAGTGAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGGAATAAAATCTCTTTGCACATGATGCACAAAGTAGTGAATATA  50

seq1  TTTTATAGTTGAGTTTGGATGTGTTTGGTTGAAAATTTCTGCATCTCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGTTGAGTTTGGATGTGTTTGGTTGAAAATTTCTGCATCTCATG  100

seq1  TCATCAGGTAAGTTTGTCTGAAGTTTTCTTATTTGTTTAAGTATCCTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGTAAGTTTGTCTGAAGTTTTCTTATTTGTTTAAGTATCCTTTC  150

seq1  TTATAATATTAGCAGTATAATATTGTGAATCTGTAAATATTGATTCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATATTAGCAGTATAATATTGTGAATCTGTAAATATTGATTCACAA  200

seq1  AATGAATTTAATACACCCCCCATCTGTTTCTGCAACAGTTTAAGAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATTTAATACACCCCCCATCTGTTTCTGCAACAGTTTAAGAAATGT  250

seq1  CAGGTTAGAAATCATCCTGGATTTCTAGAACCCAAACCTATGGTGTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAGAAATCATCCTGGATTTCTAGAACCCAAACCTATGGTGTCTAT  300

seq1  AAATCCATTAATGCCAAATTAAAATTATTTTATGGCCCAAGTTTATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCATTAATGCCAAATTAAAATTATTTTATGGCCCAAGTTTATATTT  350

seq1  TGGACCTATTTTTTTTTTGCTTTATTTCTAAATGGATTTTAAAATAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTATTTTTTTTTTGCTTTATTTCTAAATGGATTTTAAAATAAAAG  400

seq1  TTAATTTCATCCCTTATAGCAAAATAACATGATCTTTAATTATAATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCATCCCTTATAGCAAAATAACATGATCTTTAATTATAATTTTA  450

seq1  TTTGATTTTCTACCTTAATCATATAGAAACATCTGGAAACAAAGCAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTCTACCTTAATCATATAGAAACATCTGGAAACAAAGCAACAA  500

seq1  AAATTGCCTGAGGCAATCTCAATGAAACCCTAACTATGAACATGAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCCTGAGGCAATCTCAATGAAACCCTAACTATGAACATGAATAGT  550

seq1  TTTTCCACATAATAAAAATGAAAGAAATTGTACAATATGCAAATCAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACATAATAAAAATGAAAGAAATTGTACAATATGCAAATCAAAAT  600

seq1  TCTGCCCCCTTTTTACATTGCTGAGTAGATTCTGAGAAGATACTTTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCTTTTTACATTGCTGAGTAGATTCTGAGAAGATACTTTAATG  650

seq1  GAAAGCTACTGTCACCCTGGTAATTAGGTGAACCAAAGGACACCTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTACTGTCACCCTGGTAATTAGGTGAACCAAAGGACACCTCCCCT  700

seq1  ATACACGTTTTTATCTTCTGAGCATGACGCAAGGTCAAGCTGAGACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACGTTTTTATCTTCTGAGCATGACGCAAGGTCAAGCTGAGACAAAA  750

seq1  GAAAACTCCTGTAATCTTTAATTGTTTTAGAATTTCTCTAAAGAATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCCTGTAATCTTTAATTGTTTTAGAATTTCTCTAAAGAATAAAA  800

seq1  TTGAGGTTATCAAAATCTAGTTTAAATAGAAGCATTGAAAGAGGAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTATCAAAATCTAGTTTAAATAGAAGCATTGAAAGAGGAAAATG  850

seq1  GTGTCTGTTCCTGGTGACAAGTGAGTCTTCTACATGGGAATAATTAATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGTTCCTGGTGACAAGTGAGTCTTCTACATGGGAATAATTAATTG  900

seq1  TTTGTCTGTATAAAACAGCAGGAATTC  927
      |||||||||||||||||||||||||||
seq2  TTTGTCTGTATAAAACAGCAGGAATTC  927