BAC Information

Click to search

BAC

Clone NameB6Ng01-326B05
Chromosome3 (Build37)
Map Location 82,121,087 - 82,264,610
singlet/doubletdoublet
Overlap geneMtap9
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
Downstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326B05.bB6Ng01-326B05.g
ACCGA113972GA113973
length1,1481,139
definitionB6Ng01-326B05.b B6Ng01-326B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,121,087 - 82,122,255)(82,263,493 - 82,264,610)
sequence
gaattctctgctgttgatctctagcctatgaagaatgaggttttatagaa
gagacaaattcatcaccatcatctatcttcctgtagctcctgactttctc
aattcagactcttggctgtaggaggaaaacagaaacctaagaaactcatc
actttcttgagcccacacatccctagctccaccacacccaaccccctcag
ctttgtttgtcttctgtataagtattcagacatttcattttatttaattg
gaaagttaggaagaatacaattattgagtttttgtttgtttgtttgtttt
gttttgttttgttgttgttgttttgaagctagaatttacttgcatagttt
ttaaaagaatgaaactgagctggctttatgcctaagtatcccattgtaac
caaagacatataatatcatgtcttctcattattaagctgtggaggaatct
tcacaggtttaagtgacttgtacccctaaaataataagactgttgaggct
gagaaatgaagatttcaaatcccgggctagactatactacaggaaaagtg
gctgactgaagtgtgtgtatgtggtgtgcatattttgagtattatgcgat
aaattagtctactgaacagaaagtactagttttaacacttaaaacatgcc
actgaattttagttcacatttgaagctttaatggaatataaattaggtta
cataaaaatttgatagaataaaaatgaagattagaaaataaagagaccag
gcactctcagactactttatgttataatgaccatatcatgtcacctttca
aacccaaaactagttagaaacagataattaaattatcttttgttatagtc
tcttgtaaacttctagacgaataaaattcttggtaacagttttgtgggtt
agagtgctatttgaagatgttgttgccttgggatcctgtgacttgatata
tattgttgataactgtatggtttggccatctttttatgttttgagcattc
tagatggtagtaataaagcacagaatgatatttgcatcttactgatagaa
atacatagcattaaaattaagacaagtttcatctaagataaagcagtttc
ttagttttagctgctttctagcacccccatcccaaccatctaccaaac
gaattctctgttgctcatggaatgtcataatgaaagatttcatctcattc
acttttgtccaggaatgttagaattccccctctttctctctttctctctc
tcccctctttctctccatcattttatatatatatatatatatatatatat
atatatatatatatatgaaatatgtatagaaatatgtctatataatgttt
tagcctcaaaggaactaggacaaacttttcttttgatataaaactcattc
cccttaggaattactacaggaaacagtggaagaaaaagtccacatagagg
aaactgatttttttttctggtgagagattgagggagatagtagaagaaat
ttgagtaaagctagtttcttcagaatttatgtttagttttgagactctct
ctaaatttctgccattaattttctatccttcaagatcttgctcaattttg
atacgacttccaaaacttaaaaaatctcttataattcagtgtactgattt
atcattccttctcttagatgcttcaaacgtctgaataagtggggtgttca
tttagtgtgcattcattatttctcactccatctttttgtaaaacttctca
tttagcatgaggaaaagcaatttaagaatatcaaaatttcccaattgagg
gaaacataaaaccaattatctgtagttagatttccccatttttcccaaaa
ttcgcaagacgaattaacataattaccaaacacaaaaaaacagttggagt
accaggtggcaatttatctgcaaacactttttccttctttaaacttttaa
gagtttgcctgatagttaaaaggatggcatgtcagagataggcaggttat
gcatgcctatttaagggaacctaaaaatagtcccaatataatttgactct
tgatctataatattctaattctccacattcgtgggggtcatgatcagtcc
ctttaagcactttgaacccgtcatgaatgtggcctgctttgccttccagg
gtaccttttagtttaaatattttctgaacacttccaactgcttttgcagg
tgtaagcatgcctgagatgttcttatctattcagtcatggttgcattgga
gaaagaaaactgactgatcttactcagatttgagggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82121087_82122255
seq2: B6Ng01-326B05.b_49_1196

seq1  GAATTCTCTGCTGTTGATCTCTAGCCTATGAAGAATGAGGTTTTATAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTGTTGATCTCTAGCCTATGAAGAATGAGGTTTTATAGAA  50

seq1  GAGACAAATTCATCACCATCATCTATCTTCCTGTAGCTCCTGACTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAATTCATCACCATCATCTATCTTCCTGTAGCTCCTGACTTTCTC  100

seq1  AATTCAGACTCTTGGCTGTAGGAGGAAAACAGAAACCTAAGAAACTCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGACTCTTGGCTGTAGGAGGAAAACAGAAACCTAAGAAACTCATC  150

seq1  ACTTTCTTGAGCCCACACATCCCTAGCTCCACCACACCCAACCCCCTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTGAGCCCACACATCCCTAGCTCCACCACACCCAACCCCCTCAG  200

seq1  CTTTGTTTGTCTTCTGTATAAGTATTCAGACATTTCATTTTATTTAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTGTCTTCTGTATAAGTATTCAGACATTTCATTTTATTTAATTG  250

seq1  GAAAGTTAGGAAGAATACAATTATTGAGTTTTTGTTTGTTTGTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAGGAAGAATACAATTATTGAGTTTTTGTTTGTTTGTTTGTTTT  300

seq1  GTTTTGTTTTGTTGTTGTTGTTTTGAAGCTAGAATTTACTTGCATAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTGTTGTTGTTTTGAAGCTAGAATTTACTTGCATAGTTT  350

seq1  TTAAAAGAATGAAACTGAGCTGGCTTTATGCCTAAGTATCCCATTGTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGAATGAAACTGAGCTGGCTTTATGCCTAAGTATCCCATTGTAAC  400

seq1  CAAAGACATATAATATCATGTCTTCTCATTATTAAGCTGTGGAGGAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGACATATAATATCATGTCTTCTCATTATTAAGCTGTGGAGGAATCT  450

seq1  TCACAGGTTTAAGTGACTTGTACCCCTAAAATAATAAGACTGTTGAGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGTTTAAGTGACTTGTACCCCTAAAATAATAAGACTGTTGAGGCT  500

seq1  GAGAAATGAAGATTTCAAATCCCGGGCTAGACTATACTACAGGAAAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGAAGATTTCAAATCCCGGGCTAGACTATACTACAGGAAAAGTG  550

seq1  GCTGACTGAAGTGTGTGTATGTGGTGTGCATATTTTGAGTATTATGCGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTGAAGTGTGTGTATGTGGTGTGCATATTTTGAGTATTATGCGAT  600

seq1  AAATTAGTCTACTGAACAGAAAGTACTAGTTTTAACACTTAAAACATGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTCTACTGAACAGAAAGTACTAGTTTTAACACTTAAAACATGCC  650

seq1  ACTGAATTTTAGTTCACATTTGAAGCTTTAATGGAATATAAATTAGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATTTTAGTTCACATTTGAAGCTTTAATGGAATATAAATTAGGTTA  700

seq1  CATAAAAATTTGATAGAATAAAAATGAAGATTAGAAAATAAAGAGACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAATTTGATAGAATAAAAATGAAGATTAGAAAATAAAGAGACCAG  750

seq1  GCACTCTCAGACTACTTTATGTTATAATGACCATATCATGTCACCTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCTCAGACTACTTTATGTTATAATGACCATATCATGTCACCTTTCA  800

seq1  AACCCAAAACTAGTTAGAAACAGATAATTAAATTATCTTTTGTTATAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAAACTAGTTAGAAACAGATAATTAAATTATCTTTTGTTATAGTC  850

seq1  TCTTGTAAACTTCTAGACGAATAAAATTCTTGGTAACAGTTTTGTGGGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTAAACTTCTAGACGAATAAAATTCTTGGTAACAGTTTTGTGGGTT  900

seq1  AGAGTGCTATTTGAAGATGTTTGTTGCCTTGGGATCCTGTGACTTGATAT  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGAGTGCTATTTGAAGATG-TTGTTGCCTTGGGATCCTGTGACTTGATAT  949

seq1  ATATTGTTGATAACTGTATGGTTTTGGCCATCTTTTTATTGTTTTGAGCA  1000
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  ATATTGTTGATAACTGTATGG-TTTGGCCATCTTTTTA-TGTTTTGAGCA  997

seq1  TTCTAGATGGTAGTAATAAAGCACAGAAAATGATATTTGCATCTAACTGA  1050
      ||||||||||||||||||||||||||  |||||||||||||||| |||||
seq2  TTCTAGATGGTAGTAATAAAGCACAG--AATGATATTTGCATCTTACTGA  1045

seq1  TAGAAAATACATAGCATTAAAAATTAAAGAACAAAGGTTTCCATCTTAAA  1100
      ||| |||||||||||||| ||||||||   ||||  |||| |||||  ||
seq2  TAG-AAATACATAGCATT-AAAATTAA--GACAA--GTTT-CATCT--AA  1086

seq1  GATAAAAGCAGTTTCTAGTTTTTAGCTGCTTTTCCCTAGGCACCCCCATC  1150
      ||| ||||||||||||   |||||||||||||   ||| |||||||||||
seq2  GAT-AAAGCAGTTTCTTAGTTTTAGCTGCTTT---CTA-GCACCCCCATC  1131

seq1  CCCACACATCTACACAAAC  1169
      || || ||||||| |||||
seq2  CCAAC-CATCTAC-CAAAC  1148

seq1: chr3_82263493_82264610
seq2: B6Ng01-326B05.g_68_1206 (reverse)

seq1  CCCCCCTC-AATCT-AGATAG-TCAGTCA-TTTTCTTTCT-CAATTCCAA  45
      |||||||| ||||| ||  || ||||||| |||||||||| |||| | | 
seq2  CCCCCCTCAAATCTGAGTAAGATCAGTCAGTTTTCTTTCTCCAATGCAAC  50

seq1  CATGCTACATGAATAAAGA--AACATCTCAGGC-TGCTTTACA-CTGC-A  90
      ||||  || |||||| | |  |||||||||||| ||| ||||| |||| |
seq2  CATG--AC-TGAATAGATAAGAACATCTCAGGCATGC-TTACACCTGCAA  96

seq1  AAGCA-TTGG-AGTGTTCAG-AAATATT--AACTAAA--GTTCCCTGAAA  133
      ||||| |||| ||||||||| |||||||  |||||||  || ||||| ||
seq2  AAGCAGTTGGAAGTGTTCAGAAAATATTTAAACTAAAAGGTACCCTGGAA  146

seq1  G--CAAGCA-GCCACATTCATGAC-GGTTCAAAGTGCT--AAAGGACTGA  177
      |   ||||| |||||||||||||| |||||||||||||  || |||||||
seq2  GGCAAAGCAGGCCACATTCATGACGGGTTCAAAGTGCTTAAAGGGACTGA  196

seq1  TCATGA-CCCCACGATTGTGGAGAATTAGAATATTATAGATCAAGAGTCA  226
      |||||| |||||||| ||||||||||||||||||||||||||||||||||
seq2  TCATGACCCCCACGAATGTGGAGAATTAGAATATTATAGATCAAGAGTCA  246

seq1  AATTATATTGGGACTATTTTTA-GTTCCCTT-AATAGGCATGCATAACCT  274
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AATTATATTGGGACTATTTTTAGGTTCCCTTAAATAGGCATGCATAACCT  296

seq1  GCCTATCTCTGACATGCCATCCTTTTAACTATCAGGCAAAACTCTTAAAA  324
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCCTATCTCTGACATGCCATCCTTTTAACTATCAGGC-AAACTCTTAAAA  345

seq1  GTTTAAAGAAGGAAAAAGTGTTTGCAGATAAATTGCCACCTGGTACTCCA  374
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGAAGGAAAAAGTGTTTGCAGATAAATTGCCACCTGGTACTCCA  395

seq1  ACTGTTTTTTTGTGTTTGGTAATTATGTTAATTCGTCTTGCGAATTTTGG  424
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTTTTGTGTTTGGTAATTATGTTAATTCGTCTTGCGAATTTTGG  445

seq1  GAAAAATGGGGAAATCTAACTACAGATAATTGGTTTTATGTTTCCCTCAA  474
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGGGGAAATCTAACTACAGATAATTGGTTTTATGTTTCCCTCAA  495

seq1  TTGGGAAATTTTGATATTCTTAAATTGCTTTTCCTCATGCTAAATGAGAA  524
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAATTTTGATATTCTTAAATTGCTTTTCCTCATGCTAAATGAGAA  545

seq1  GTTTTACAAAAAGATGGAGTGAGAAATAATGAATGCACACTAAATGAACA  574
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAAAAAGATGGAGTGAGAAATAATGAATGCACACTAAATGAACA  595

seq1  CCCCACTTATTCAGACGTTTGAAGCATCTAAGAGAAGGAATGATAAATCA  624
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTTATTCAGACGTTTGAAGCATCTAAGAGAAGGAATGATAAATCA  645

seq1  GTACACTGAATTATAAGAGATTTTTTAAGTTTTGGAAGTCGTATCAAAAT  674
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTGAATTATAAGAGATTTTTTAAGTTTTGGAAGTCGTATCAAAAT  695

seq1  TGAGCAAGATCTTGAAGGATAGAAAATTAATGGCAGAAATTTAGAGAGAG  724
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAGATCTTGAAGGATAGAAAATTAATGGCAGAAATTTAGAGAGAG  745

seq1  TCTCAAAACTAAACATAAATTCTGAAGAAACTAGCTTTACTCAAATTTCT  774
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAACTAAACATAAATTCTGAAGAAACTAGCTTTACTCAAATTTCT  795

seq1  TCTACTATCTCCCTCAATCTCTCACCAGAAAAAAAAATCAGTTTCCTCTA  824
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATCTCCCTCAATCTCTCACCAGAAAAAAAAATCAGTTTCCTCTA  845

seq1  TGTGGACTTTTTCTTCCACTGTTTCCTGTAGTAATTCCTAAGGGGAATGA  874
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTTTTTCTTCCACTGTTTCCTGTAGTAATTCCTAAGGGGAATGA  895

seq1  GTTTTATATCAAAAGAAAAGTTTGTCCTAGTTCCTTTGAGGCTAAAACAT  924
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATATCAAAAGAAAAGTTTGTCCTAGTTCCTTTGAGGCTAAAACAT  945

seq1  TATATAGACATATTTCTATACATATTTCATATATATATATATATATATAT  974
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGACATATTTCTATACATATTTCATATATATATATATATATATAT  995

seq1  ATATATATATATATATATATAAAATGATGGAGAGAAAGAGGGGAGAGAGA  1024
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATAAAATGATGGAGAGAAAGAGGGGAGAGAGA  1045

seq1  GAAAGAGAGAAAGAGGGGGAATTCTAACATTCCTGGACAAAAGTGAATGA  1074
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAAAGAGGGGGAATTCTAACATTCCTGGACAAAAGTGAATGA  1095

seq1  GATGAAATCTTTCATTATGACATTCCATGAGCAACAGAGAATTC  1118
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAATCTTTCATTATGACATTCCATGAGCAACAGAGAATTC  1139