BAC Information

Click to search

BAC

Clone NameB6Ng01-326F10
Chromosome3 (Build37)
Map Location 26,777,220 - 26,901,498
singlet/doubletdoublet
Overlap geneSpata16
Upstream geneNlgn1, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326F10.bB6Ng01-326F10.g
ACCGA114171GA114172
length1,166878
definitionB6Ng01-326F10.b B6Ng01-326F10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,777,220 - 26,778,404)(26,900,921 - 26,901,498)
sequence
gaattcttatttttatcttaagacaggcttggggtacaggtggctattta
caaactttctttagttaattggatttcttaacatgaaatagtattttcaa
aactaattaaattgtgttctaatgaatatttaagagcaaaatatgttatc
tttgctgtacagtatatagatttttaaatcatccataaaagtaattatat
ttttttacgttctcaaaaagtgctatgctattactgctgctaagtgggtc
gttcgctcttcacaggccatgattgaagaagccatcaccagggccgaagc
tttctcggttatgtacacgccctttgcaacaagaatcaagcctgagaaca
tagaaaaggtgaaagaggtgttcatgagaactcaccccacctacgtggac
tgtatctacacaggtgagttcaccttcttcacgcaggcgactggtgttct
ggtgcccatggcaaccaaggcggggggcttcatggtttgctggctgtttg
tacttacaggtgtaagctttaatctaaagagttcaaatgtgaacttattt
ttaagactttaagtagagctagctttcctttcaacacaatatgccttgtg
tgctcacaattttaggctttttagggaataaaactagaaactcttaaagt
tttaagagaaaaaaatagtaaaagcctgtgataaaaagctaagctaactc
cccacctcgagagcccctctgtactaccagaaggtagtgttttcctggag
acagatttccccccattgcctgctgcttgtatttcctgcccaccagtcct
cacccctcggccgccctccccaatgccctaggtaaccaagggcacccgct
tgagtcccttttcttaaagggaggaagaggtttattttggatcacagttt
aacagatgaagtccattgtgacaggaatgaacgtgggaggagtctctgcg
gtgggagtgcctctgtggcagcagcttgcatgcggtttgttttcaacatg
tgggtatgtgaggagccagatataggataggctcagccccttctttctcc
gagtctcacgtctccagctaaactccacctctaaagtttcaagcttccca
aacagcatcaccagatggagacatgtgtcaacacaatcctctgtggagca
tgcttccgtccaaccc

gaattccctttccatggttggatgccaagaactttgtttccttagttgtc
cccaacaccttagcatttgtggattccttctttcttaaagttttatatat
ttatacttattttatctatttagtgtatgtgtgcatgtgggtgcgtgtgt
gtgtatgtggtgtatacaagcatacccatgtcacgacactcagatggagg
ttagagagcaactcttaggagctggtctcctctactacctgtggtatctg
gggacggaactcaggttatcagggttgtatgccagcatatctacctgctt
ggccatctcacagtgacatcttttgattgtgaaatattctttctgaaaaa
aattatttatttattcactttatatgccaatgtaagccccctctccttcc
agtaccccctcacactgacccttcccccattgcccctctccttctcctct
gagagggggggcaagtcacttcaggaccaggtgcatcctctcccatggag
accagacaaggcagccagtccagttaagggaatgagatccgaaggcaggc
aacagattcaggggcgttccctgctgtagttgttgggggacccacatgaa
caccaagttgcgtatctgctacatgtgtgtggggtcttggtctaacctat
gcttgttctttggttggtggtctctgggagctcctgagtgtccaggttta
gttgactctggtgtttttctgtggagtccctgtccttttcagctccctca
atcttacattttttgggttgaagtttttgtgaatgggttggtgtgcttat
ccttcccctgggagtcctaccttggctacaagaagtatccatttcaggat
tcattatcccctactgctaggagttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26777220_26778404
seq2: B6Ng01-326F10.b_51_1216

seq1  GAATTCTTATTTTTATCTTAAGACAGGCTTGGGGTACAGGTGGCTATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTTTATCTTAAGACAGGCTTGGGGTACAGGTGGCTATTTA  50

seq1  CAAACTTTCTTTAGTTAATTGGATTTCTTAACATGAAATAGTATTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTCTTTAGTTAATTGGATTTCTTAACATGAAATAGTATTTTCAA  100

seq1  AACTAATTAAATTGTGTTCTAATGAATATTTAAGAGCAAAATATGTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATTAAATTGTGTTCTAATGAATATTTAAGAGCAAAATATGTTATC  150

seq1  TTTGCTGTACAGTATATAGATTTTTAAATCATCCATAAAAGTAATTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGTACAGTATATAGATTTTTAAATCATCCATAAAAGTAATTATAT  200

seq1  TTTTTTACGTTCTCAAAAAGTGCTATGCTATTACTGCTGCTAAGTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTACGTTCTCAAAAAGTGCTATGCTATTACTGCTGCTAAGTGGGTC  250

seq1  GTTCGCTCTTCACAGGCCATGATTGAAGAAGCCATCACCAGGGCCGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGCTCTTCACAGGCCATGATTGAAGAAGCCATCACCAGGGCCGAAGC  300

seq1  TTTCTCGGTTATGTACACGCCCTTTGCAACAAGAATCAAGCCTGAGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCGGTTATGTACACGCCCTTTGCAACAAGAATCAAGCCTGAGAACA  350

seq1  TAGAAAAGGTGAAAGAGGTGTTCATGAGAACTCACCCCACCTACGTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGGTGAAAGAGGTGTTCATGAGAACTCACCCCACCTACGTGGAC  400

seq1  TGTATCTACACAGGTGAGTTCACCTTCTTCACGCAGGCGACTGGTGTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTACACAGGTGAGTTCACCTTCTTCACGCAGGCGACTGGTGTTCT  450

seq1  GGTGCCCATGGCAACCAAGGCGGGGGGCTTCATGGTTTGCTGGCTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCATGGCAACCAAGGCGGGGGGCTTCATGGTTTGCTGGCTGTTTG  500

seq1  TACTTACAGGTGTAAGCTTTAATCTAAAGAGTTCAAATGTGAACTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACAGGTGTAAGCTTTAATCTAAAGAGTTCAAATGTGAACTTATTT  550

seq1  TTAAGACTTTAAGTAGAGCTAGCTTTCCTTTCAACACAATATGCCTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACTTTAAGTAGAGCTAGCTTTCCTTTCAACACAATATGCCTTGTG  600

seq1  TGCTCACAATTTTAGGCTTTTTAGGGAATAAAACTAGAAACTCTTAAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCACAATTTTAGGCTTTTTAGGGAATAAAACTAGAAACTCTTAAAGT  650

seq1  TTTAAGAGAAAAAAATAGTAAAAGCCTGTGATAAAAAGCTAAGCTAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAGAAAAAAATAGTAAAAGCCTGTGATAAAAAGCTAAGCTAACTC  700

seq1  CCCACCTCGAGAGCCCCTCTGTACTACCAGAAGGTAGTGTTTTCCTGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCGAGAGCCCCTCTGTACTACCAGAAGGTAGTGTTTTCCTGGAG  750

seq1  ACAGATTTCCCCCCATTGCCTGCTGCTTGTATTTCCTGCCCACCAGTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTTCCCCCCATTGCCTGCTGCTTGTATTTCCTGCCCACCAGTCCT  800

seq1  CACCCCTCGGCCGCCCTCCCCAATGCCCTAGGTAACCAAGGGCACCCGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCTCGGCCGCCCTCCCCAATGCCCTAGGTAACCAAGGGCACCCGCT  850

seq1  TGAGTCCCTTTTCTT-AAGGGAGGAAGAGGTTTATTTTGGATCACAGTTT  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTTTTCTTAAAGGGAGGAAGAGGTTTATTTTGGATCACAGTTT  900

seq1  AACAGATGAAGTCCATTGTGACAGGGAATGAACGGTGGGAGGAGTCTCTG  949
      ||||||||||||||||||||||| ||||||||| ||||||||||||||||
seq2  AACAGATGAAGTCCATTGTGACA-GGAATGAAC-GTGGGAGGAGTCTCTG  948

seq1  CGGTGGGAGGTGCCTCTGTGGCAGCAGCTTGCAATGCGGTTTGTTTTTCC  999
      |||||||| ||||||||||||||||||||||| |||||||||| ||||| 
seq2  CGGTGGGA-GTGCCTCTGTGGCAGCAGCTTGC-ATGCGGTTTG-TTTTCA  995

seq1  ACATGTGGGTATGTGAGGAAGCCAGATATAGGATAGGCTCAAGCCCCTTC  1049
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  ACATGTGGGTATGTGAGG-AGCCAGATATAGGATAGGCTC-AGCCCCTTC  1043

seq1  TTTCCTCCGAGGTTCTCACGTCTCCAGCTAAACTCCACCTCCTAAAAGTT  1099
      ||| |||||||  ||||||||||||||||||||||||||||   ||||||
seq2  TTT-CTCCGAG--TCTCACGTCTCCAGCTAAACTCCACCTC--TAAAGTT  1088

seq1  TCAAAGCCTTCCCAAAACAGCATCACCAGATGGAGACCATGTGTTCAAAC  1149
      ||||   |||||| |||||||||||||||||||||| |||||||  | ||
seq2  TCAA--GCTTCCC-AAACAGCATCACCAGATGGAGA-CATGTGTCAACAC  1134

seq1  ACATCCTCCTGTGGAGCATGCCTCCCGTCCCAACCC  1185
      | ||||| |||||||||||| || |||| |||||||
seq2  A-ATCCT-CTGTGGAGCATG-CTTCCGT-CCAACCC  1166


seq1: chr3_26900921_26901498
seq2: B6Ng01-326F10.g_67_644 (reverse)

seq1  TACAGCAGGGAACGCCCCTGAATCTGTTGCCTGCCTTCGGATCTCATTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCAGGGAACGCCCCTGAATCTGTTGCCTGCCTTCGGATCTCATTCC  50

seq1  CTTAACTGGACTGGCTGCCTTGTCTGGTCTCCATGGGAGAGGATGCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTGGACTGGCTGCCTTGTCTGGTCTCCATGGGAGAGGATGCACCT  100

seq1  GGTCCTGAAGTGACTTGCCCCCCCTCTCAGAGGAGAAGGAGAGGGGCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAAGTGACTTGCCCCCCCTCTCAGAGGAGAAGGAGAGGGGCAAT  150

seq1  GGGGGAAGGGTCAGTGTGAGGGGGTACTGGAAGGAGAGGGGGCTTACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGGGTCAGTGTGAGGGGGTACTGGAAGGAGAGGGGGCTTACATT  200

seq1  GGCATATAAAGTGAATAAATAAATAATTTTTTTCAGAAAGAATATTTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATATAAAGTGAATAAATAAATAATTTTTTTCAGAAAGAATATTTCAC  250

seq1  AATCAAAAGATGTCACTGTGAGATGGCCAAGCAGGTAGATATGCTGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAAGATGTCACTGTGAGATGGCCAAGCAGGTAGATATGCTGGCAT  300

seq1  ACAACCCTGATAACCTGAGTTCCGTCCCCAGATACCACAGGTAGTAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCTGATAACCTGAGTTCCGTCCCCAGATACCACAGGTAGTAGAGG  350

seq1  AGACCAGCTCCTAAGAGTTGCTCTCTAACCTCCATCTGAGTGTCGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCTCCTAAGAGTTGCTCTCTAACCTCCATCTGAGTGTCGTGACA  400

seq1  TGGGTATGCTTGTATACACCACATACACACACACGCACCCACATGCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATGCTTGTATACACCACATACACACACACGCACCCACATGCACAC  450

seq1  ATACACTAAATAGATAAAATAAGTATAAATATATAAAACTTTAAGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTAAATAGATAAAATAAGTATAAATATATAAAACTTTAAGAAAGA  500

seq1  AGGAATCCACAAATGCTAAGGTGTTGGGGACAACTAAGGAAACAAAGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCACAAATGCTAAGGTGTTGGGGACAACTAAGGAAACAAAGTTC  550

seq1  TTGGCATCCAACCATGGAAAGGGAATTC  578
      ||||||||||||||||||||||||||||
seq2  TTGGCATCCAACCATGGAAAGGGAATTC  578


| Home | SequenceCutter | Blast | Download |