BAC Information

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BAC

Clone NameB6Ng01-326K11
Chromosome3 (Build37)14 (Build37)
Map Location 45,386,905 - 45,387,421111,813,072 - 111,814,206
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326K11.bB6Ng01-326K11.g
ACCGA114410GA114411
length1,2451,130
definitionB6Ng01-326K11.b B6Ng01-326K11.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,386,905 - 45,387,421)(111,813,072 - 111,814,206)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctatctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaggacttgaagtttttatcatac
agatctttcacttccttcgttagagtcacgccaagatattttatattatt
tgtggctattgagaaggtgttgtttccctaatttctttcttcagcttgtt
tattctttgtgtagaagaaggccattgacttgtttggagttaattttata
tccagctacttcaccgagcttgtttatcaggttaggagcttctcttgttg
gaattttaggttccttataaatactatactatcatctgcaaaagtgaatt
tgactctcttccaattgaatcccttgattctttgtggcgatggctgctaa
cttcagaatcatgtgaaagttgacaagtggcagccttgtctagtc

gaattctacccacctccccatccacaaataggcaatgtaagtgaactcaa
tgcattgaaaaataaagcgcctgaagctggcagggaaaacttgtagggga
tgatgggaagtcagaaagaaagaatgaggagtggggttgatcaatattca
ttatatgcatgtatgaaatttataaataataaaaacacagcaacttcact
actgagctttttatttatttctaactttattcacatgctttacccaggtt
ttctacacttttcttctttattgaaaatatatcttctctctcatataata
tattctgacaagccaactgtccctccaaacttccctttccccaagagcca
caccataagggccacaccataagggccacaccatgctcattttgcttagg
aagaatcaggtctcacaaagacaacagcacacagcagaagaacagacagt
aagacaaggacaaaagactcacagattttcctacttaaaaaatattttta
aaatattttttctcgaaaattacaatatagtgaaaaaaattcatgccatt
taaagttcttatcttatataagtttcataagtagtagttaaatttaaaat
attattttgcataataaatatttgtttagtttttgcactgtttaattctg
tttgtagtccatattatatttgttaatgctttcctgcttcccctgtgcaa
ataatcctttaaatatatacaataactaaaataataattacatatgttta
atagactagatatataatacttttgatttaatgttttctcgctttaaaat
ctcccattaatgccaaagtaactccctcctatttttgaataggtagacag
gtacttgacctcagcaagcattgtcttcatatctatatacctgtctcttc
attccctcaaaaatgtgttattttcagtggctcagaaaatctaaatatga
tgcctttgtaaaaaaaaaaatcactatttctattaatttgaaaaattacc
caagagttaatagtttgacccagtatacattgagtaccacatctgcttta
ggaagtatgctgattctatgaaaacatattcctgagcagaaatagcgatg
cttcaagctctatcagcccaaagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45386905_45387421
seq2: B6Ng01-326K11.b_803_1291 (reverse)

seq1  GACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTACTTG  50
      ||||||||||||||| |||| || ||   | ||||   ||||  | | ||
seq2  GACTAGACAAGGCTG-CCAC-TTGTC---AACTTT--CACATGATTC-TG  42

seq1  AAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAA  100
      |||  |||||   ||| | ||| | |||||  || ||||| ||||| | |
seq2  AAG--TTAGC---AGCCA-TCG-CCACAAA--GA-ATCAA-GGGATTC-A  80

seq1  ATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGATAGT  150
      ||||||| ||    |||||||   |||| ||||||||||||||  |||||
seq2  ATTGGAAGAG----AGTCAAA--TTCAC-TTTTGCAGATGATAGTATAGT  123

seq1  ATATATAAGTGACCCTAAAAATTCCAAC-AGAGAA-CTCCTAAACCTGAT  198
      || |||||| || ||| ||||||||||| |||||| ||||| ||||||||
seq2  ATTTATAAG-GAACCT-AAAATTCCAACAAGAGAAGCTCCT-AACCTGAT  170

seq1  AAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACT-CAAACAAGTCA  247
      |||||   |||||||||||||||||||||||||||||| |||||||||||
seq2  AAACAAGCTCGGTGAAGTAGCTGGATATAAAATTAACTCCAAACAAGTCA  220

seq1  ATGGCCTTTCTCTACACAAAGAATAAACAGGCTG-AGAAAGAAATTAGGG  296
      ||||||||  ||||||||||||||||||| |||| |||||||||||||||
seq2  ATGGCCTTCTTCTACACAAAGAATAAACAAGCTGAAGAAAGAAATTAGGG  270

seq1  AAACAACACCCTTCTCAATAGCCACAAATAATATAAAATATCTCGGCGTG  346
      |||||||| |||||||||||||||||||||||||||||||||| ||||||
seq2  AAACAACA-CCTTCTCAATAGCCACAAATAATATAAAATATCTTGGCGTG  319

seq1  ACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCCCT  396
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACTCTAACGAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGT-CCT  368

seq1  GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCT  418

seq1  CATGGATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAAAAGCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTGGCAGGACCAACATTGTAAAAATGGCTATCTTGCCAAAAGCA  468

seq1  ATCTACAGATTCAATGCAATC  517
      |||||||||||||||||||||
seq2  ATCTACAGATTCAATGCAATC  489


seq1: chr14_111813072_111814206
seq2: B6Ng01-326K11.g_64_1193 (reverse)

seq1  TCTCTCTCTTTGGGCTGATAGAAGCTTTGAAGCATCCGCTATTCTGGCTC  50
      ||||||||||||||||||||| ||| ||||||||| |||||||   ||||
seq2  TCTCTCTCTTTGGGCTGATAG-AGC-TTGAAGCAT-CGCTATTTCTGCTC  47

seq1  AGGAAATATTGTTTCATAGAATCAGCATAACTTTCCCTAAGCAGATGTGG  100
      ||| |||||  ||||||||||||||||||   ||||  ||||||||||||
seq2  AGG-AATATGTTTTCATAGAATCAGCATA--CTTCCTAAAGCAGATGTGG  94

seq1  TACTCAATGTTATACTGGGTC-AACTATTAACTTCTTGGTTAATTTTTCA  149
      ||||||||| ||||||||||| |||||||||| |||||| ||||||||||
seq2  TACTCAATG-TATACTGGGTCAAACTATTAAC-TCTTGGGTAATTTTTCA  142

seq1  AATTTATAG-AATAGTGA-TTTTTTTTTTACAAAGGCATCATATTTAGAT  197
      |||| |||| |||||||| |||||||||||||||||||||||||||||||
seq2  AATTAATAGAAATAGTGATTTTTTTTTTTACAAAGGCATCATATTTAGAT  192

seq1  TTTCTGAGCCACTGAAAATAACACATTTTTGAGGGAATGAAGAGACAGGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCCACTGAAAATAACACATTTTTGAGGGAATGAAGAGACAGGT  242

seq1  ATATAGATATGAAGACAATGCTTGCTGAGGTCAAGTACCTGTCTACCTAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGATATGAAGACAATGCTTGCTGAGGTCAAGTACCTGTCTACCTAT  292

seq1  TCAAAAATAGGAGGGAGTTACTTTGGCATTAATGGGAGATTTTAAAGCGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATAGGAGGGAGTTACTTTGGCATTAATGGGAGATTTTAAAGCGA  342

seq1  GAAAACATTAAATCAAAAGTATTATATATCTAGTCTATTAAACATATGTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACATTAAATCAAAAGTATTATATATCTAGTCTATTAAACATATGTA  392

seq1  ATTATTATTTTAGTTATTGTATATATTTAAAGGATTATTTGCACAGGGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTTTAGTTATTGTATATATTTAAAGGATTATTTGCACAGGGGA  442

seq1  AGCAGGAAAGCATTAACAAATATAATATGGACTACAAACAGAATTAAACA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAAAGCATTAACAAATATAATATGGACTACAAACAGAATTAAACA  492

seq1  GTGCAAAAACTAAACAAATATTTATTATGCAAAATAATATTTTAAATTTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAAACTAAACAAATATTTATTATGCAAAATAATATTTTAAATTTA  542

seq1  ACTACTACTTATGAAACTTATATAAGATAAGAACTTTAAATGGCATGAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTACTTATGAAACTTATATAAGATAAGAACTTTAAATGGCATGAAT  592

seq1  TTTTTTCACTATATTGTAATTTTCGAGAAAAAATATTTTAAAAATATTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACTATATTGTAATTTTCGAGAAAAAATATTTTAAAAATATTTT  642

seq1  TTAAGTAGGAAAATCTGTGAGTCTTTTGTCCTTGTCTTACTGTCTGTTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGGAAAATCTGTGAGTCTTTTGTCCTTGTCTTACTGTCTGTTCT  692

seq1  TCTGCTGTGTGCTGTTGTCTTTGTGAGACCTGATTCTTCCTAAGCAAAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTGTGCTGTTGTCTTTGTGAGACCTGATTCTTCCTAAGCAAAAT  742

seq1  GAGCATGGTGTGGCCCTTATGGTGTGGCCCTTATGGTGTGGCTCTTGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGGTGTGGCCCTTATGGTGTGGCCCTTATGGTGTGGCTCTTGGGG  792

seq1  AAAGGGAAGTTTGGAGGGACAGTTGGCTTGTCAGAATATATTATATGAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAAGTTTGGAGGGACAGTTGGCTTGTCAGAATATATTATATGAGA  842

seq1  GAGAAGATATATTTTCAATAAAGAAGAAAAGTGTAGAAAACCTGGGTAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATATATTTTCAATAAAGAAGAAAAGTGTAGAAAACCTGGGTAAA  892

seq1  GCATGTGAATAAAGTTAGAAATAAATAAAAAGCTCAGTAGTGAAGTTGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAATAAAGTTAGAAATAAATAAAAAGCTCAGTAGTGAAGTTGCT  942

seq1  GTGTTTTTATTATTTATAAATTTCATACATGCATATAATGAATATTGATC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTATTATTTATAAATTTCATACATGCATATAATGAATATTGATC  992

seq1  AACCCCACTCCTCATTCTTTCTTTCTGACTTCCCATCATCCCCTACAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCACTCCTCATTCTTTCTTTCTGACTTCCCATCATCCCCTACAAGT  1042

seq1  TTTCCCTGCCAGCTTCAGGCGCTTTATTTTTCAATGCATTGAGTTCACTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGCCAGCTTCAGGCGCTTTATTTTTCAATGCATTGAGTTCACTT  1092

seq1  ACATTGCCTATTTGTGGATGGGGAGGTGGGTAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCTATTTGTGGATGGGGAGGTGGGTAGAATTC  1130


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