BAC Information

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BAC

Clone NameB6Ng01-327E02
Chromosome3 (Build37)
Map Location 51,440,740 - 51,545,884
singlet/doubletdoublet
Overlap geneMgst2, Maml3
Upstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684
Downstream geneLOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327E02.bB6Ng01-327E02.g
ACCGA114853GA114854
length4561,111
definitionB6Ng01-327E02.b B6Ng01-327E02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,545,425 - 51,545,884)(51,440,740 - 51,441,849)
sequence
ctgcgcagtggctgtcctccagatgactctaggcttcgtcaaggtgacag
ttaaagctaatcaggacagatgcctaataaaactctagcactggttacac
cctgccttttgctcttttcaggctgtcccttttcacacagaccccgcctg
tctgatccctaccctgtgttctctttccccttgctgctgtgtgtacccat
ccagggccattctgttccatttgcgtgggggtggggtgggggtgtcagag
actttcatttttcaagtgtctgctctgagtgagaggtgcatcctttctcg
gtaggactcacccttacaggagtggaagaaaaatcccctatgtacctgaa
atccgcggcctaaatgtcctcactcaaaggaggaaccctgctgcacacag
aagcttgggataacgcatgctgagactacgtaatgagcttgccaggtgac
tcctca
gaattcagtgaatcgccacttccgggctccacgggcgtctttctggtatc
tttaaatgccacggctgagggcggcttcctgatcgacttgttcctcagct
ggagtgagcagccgtaagtcaggacggagcagactgggcagagctccgca
gcatgcaccacccaggtctcatgggctttgttaaaggcttcctgtctata
ctgtggaactgtagtgacccgggcaatcatgtaccagaggctttctgccc
atccccaggcagctgtggttgagaattccccacatagctggtgactgagc
acggagcaccaattggaggtgagatagctcaaggaacgggcctttgccta
gtgagcctttgtgagtaagaaagaaattcatcttggaacagtcagtctag
atgtagttttaccactgatgaaagatcaagcaactttgcatactgagaaa
gatgtctatcacagtcctaacgtgctgcctccctgctgaggaaaggcggt
aggtaaacactagtattgaaaggctgctctctgcaatggaaccactacag
ttttataaagacgagcaggtttatattcacactgcaattaataacataca
atgaacttgaatctgaactgagatgtttcggcagtggtccacggtgtgct
gtgtgattacatgcacagtgtgtggagcatgctgtgtgttggcagccaat
gatgggtcggaagtcacatgatgtaacactggtgtgtcctccctgaaata
cctcagattcattacaattttttattttgaattatggaattatattttgg
ttgttgcttgtccagagaccttttttttctgttgccatttttttttgcaa
gtctatgttcagttataaccctgtgggtttaagaagcgtcatcctagacc
ccggtaccccttttggttctgcccagtgaatgggctgcatccacagctga
aggagaagaatgaattgactaccccagaagttttttagcgagttatcata
aatgctagtttgtgacagagagctcttctttctctcacgttcagagttgg
aggtgtgatgatcccctggctctgtttccaagtgcctgaatgaagcaaaa
actcaacatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51545425_51545884
seq2: B6Ng01-327E02.b_45_506 (reverse)

seq1  TGAGGAGTCACCTAGCAAGCACACTCAGGAG-CTCAGCA-GAGAATGACA  48
      ||||||||||||| |||||| || |  | || ||||||| | |     | 
seq2  TGAGGAGTCACCTGGCAAGCTCATTACGTAGTCTCAGCATGCGTTATCCC  50

seq1  AAGCCGCCGACTGCAGCAGGGCTCCTGGGCTGTTTTTGGACATTTTGGCA  98
      ||||  | |  |||||||||| ||||    ||  |  |||||||| ||| 
seq2  AAGCTTCTGTGTGCAGCAGGGTTCCTCCTTTGAGTGAGGACATTTAGGCC  100

seq1  GAGAATTTCAGGTACATAGGGGATTTTTCCTCCACTCCTCTTTGGGTGCC  148
      | | ||||||||||||||||||||||||| ||||||||| |  |||||  
seq2  GCGGATTTCAGGTACATAGGGGATTTTTCTTCCACTCCTGTAAGGGTGAG  150

seq1  TCCTACAGAGAAAGGATGCAGGTGACACTCAGAGCAGACACTTGAAAACT  198
      |||||| |||||||||||||  |  ||||||||||||||||||||||| |
seq2  TCCTACCGAGAAAGGATGCACCTCTCACTCAGAGCAGACACTTGAAAAAT  200

seq1  GAAAGACTGTGACACCCCCACCCCACCCCCACGCAAATGGAACAGAATGG  248
      ||||| || |||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTCTGACACCCCCACCCCACCCCCACGCAAATGGAACAGAATGG  250

seq1  CCCTGGATGGGTACACACAGCAGCAAGGGGAAAGAGAACACAGGGTAGGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGGGTACACACAGCAGCAAGGGGAAAGAGAACACAGGGTAGGG  300

seq1  ATCAGACAGGCGGGGTCTGTGTGAAAAGGGACAGCCTGAAAAGAGCAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACAGGCGGGGTCTGTGTGAAAAGGGACAGCCTGAAAAGAGCAAAA  350

seq1  GGCAGGGTGTAACCAGTGCTAGAGTTTTATTAGGCATCTGTCCTGATTAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGTGTAACCAGTGCTAGAGTTTTATTAGGCATCTGTCCTGATTAG  400

seq1  CTTTAACTGTCACCTTGACGAAGCCTAGAGTCATCTGGAGGACAGCCACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTGTCACCTTGACGAAGCCTAGAGTCATCTGGAGGACAGCCACT  450

seq1  GCGCAGGAATTC  460
      ||||||||||||
seq2  GCGCAGGAATTC  462

seq1: chr3_51440740_51441849
seq2: B6Ng01-327E02.g_67_1177

seq1  GAATTCAGTGAATCGCCACTTCCGGGCTCCACGGGCGTCTTTCTGGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAATCGCCACTTCCGGGCTCCACGGGCGTCTTTCTGGTATC  50

seq1  TTTAAATGCCACGGCTGAGGGCGGCTTCCTGATCGACTTGTTCCTCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGCCACGGCTGAGGGCGGCTTCCTGATCGACTTGTTCCTCAGCT  100

seq1  GGAGTGAGCAGCCGTAAGTCAGGACGGAGCAGACTGGGCAGAGCTCCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAGCAGCCGTAAGTCAGGACGGAGCAGACTGGGCAGAGCTCCGCA  150

seq1  GCATGCACCACCCAGGTCTCATGGGCTTTGTTAAAGGCTTCCTGTCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACCACCCAGGTCTCATGGGCTTTGTTAAAGGCTTCCTGTCTATA  200

seq1  CTGTGGAACTGTAGTGACCCGGGCAATCATGTACCAGAGGCTTTCTGCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAACTGTAGTGACCCGGGCAATCATGTACCAGAGGCTTTCTGCCC  250

seq1  ATCCCCAGGCAGCTGTGGTTGAGAATTCCCCACATAGCTGGTGACTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGGCAGCTGTGGTTGAGAATTCCCCACATAGCTGGTGACTGAGC  300

seq1  ACGGAGCACCAATTGGAGGTGAGATAGCTCAAGGAACGGGCCTTTGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGCACCAATTGGAGGTGAGATAGCTCAAGGAACGGGCCTTTGCCTA  350

seq1  GTGAGCCTTTGTGAGTAAGAAAGAAATTCATCTTGGAACAGTCAGTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTTTGTGAGTAAGAAAGAAATTCATCTTGGAACAGTCAGTCTAG  400

seq1  ATGTAGTTTTACCACTGATGAAAGATCAAGCAACTTTGCATACTGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGTTTTACCACTGATGAAAGATCAAGCAACTTTGCATACTGAGAAA  450

seq1  GATGTCTATCACAGTCCTAACGTGCTGCCTCCCTGCTGAGGAAAGGCGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTATCACAGTCCTAACGTGCTGCCTCCCTGCTGAGGAAAGGCGGT  500

seq1  AGGTAAACACTAGTATTGAAAGGCTGCTCTCTGCAATGGAACCACTACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAACACTAGTATTGAAAGGCTGCTCTCTGCAATGGAACCACTACAG  550

seq1  TTTTATAAAGACGAGCAGGTTTATATTCACACTGCAATTAATAACATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAAGACGAGCAGGTTTATATTCACACTGCAATTAATAACATACA  600

seq1  ATGAACTTGAATCTGAACTGAGATGTTTCGGCAGTGGTCCACGGTGTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGAATCTGAACTGAGATGTTTCGGCAGTGGTCCACGGTGTGCT  650

seq1  GTGTGATTACATGCACAGTGTGTGGAGCATGCTGTGTGTTGGCAGCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATTACATGCACAGTGTGTGGAGCATGCTGTGTGTTGGCAGCCAAT  700

seq1  GATGGGTCGGAAGTCACATGATGTAACACTGGTGTGTCCTCCCTGAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGTCGGAAGTCACATGATGTAACACTGGTGTGTCCTCCCTGAAATA  750

seq1  CCTCAGATTCATTACAATTTTTTATTTTGAATTATGGAATTATATTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGATTCATTACAATTTTTTATTTTGAATTATGGAATTATATTTTGG  800

seq1  TTGTTGCTTGTCCAGAGACC-TTTTTTTCTGTTGCCA-TTTTTTTTGCAA  848
      |||||||||||||||||||| |||||||||||||||| ||||||||||||
seq2  TTGTTGCTTGTCCAGAGACCTTTTTTTTCTGTTGCCATTTTTTTTTGCAA  850

seq1  GTCTATGTTCAGTTATAA-CCTGT-GGTTTAAGAAGCGTCATCCTAGA-C  895
      |||||||||||||||||| ||||| ||||||||||||||||||||||| |
seq2  GTCTATGTTCAGTTATAACCCTGTGGGTTTAAGAAGCGTCATCCTAGACC  900

seq1  CCGGTACCCC-TTTGGTTCTGCCCAGTGAAT-GGCTGCATCCACAGCTGA  943
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  CCGGTACCCCTTTTGGTTCTGCCCAGTGAATGGGCTGCATCCACAGCTGA  950

seq1  AGGAG-AGAATGAA-TGACTACCCCAGAAGTTTTTAGGCGAG-TATCATA  990
      ||||| |||||||| ||||||||||||||||||||  ||||| |||||||
seq2  AGGAGAAGAATGAATTGACTACCCCAGAAGTTTTTTAGCGAGTTATCATA  1000

seq1  AATGCTAAGTTTGTGACAGAGAGCTCTTCTTCCTTCTC-CACGGTCCAGA  1039
      |||||| |||||||||||||||||||||||   ||||| ||| || ||||
seq2  AATGCT-AGTTTGTGACAGAGAGCTCTTCT---TTCTCTCAC-GTTCAGA  1045

seq1  GTTTGAGGTGTGATGATCCCCCTGCCTCTGTTCCCCAAGTGCTGGGATGA  1089
      ||| ||||||||||||| |||||| |||||||  ||||||||  | ||||
seq2  GTTGGAGGTGTGATGAT-CCCCTGGCTCTGTT-TCCAAGTGCCTGAATGA  1093

seq1  GGCAAAAAAACTCACACATCT  1110
       ||  ||||||||| ||||||
seq2  AGC--AAAAACTCA-ACATCT  1111