BAC Information

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BAC

Clone NameB6Ng01-327I08
Chromosome3 (Build37)
Map Location 157,520,626 - 157,654,894
singlet/doubletdoublet
Overlap geneLOC624684, Cth, Ankrd13c
Upstream geneNegr1, LOC546818, Zranb2, Ptger3, LOC433686
Downstream geneSfrs11, Lrrc40, Lrrc7, LOC100041008, LOC668905
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327I08.bB6Ng01-327I08.g
ACCGA115047GA115048
length1,1271,107
definitionB6Ng01-327I08.b B6Ng01-327I08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(157,520,626 - 157,521,754)(157,653,801 - 157,654,894)
sequence
gaattctcagttgaggaaactcaaatgatagaattctagagtaataacac
tattttcccttaactacaaagcattgaagagaagggatacagagcctatc
tgatttaggcatcacatgattgccttaaattagactaccaggataatctg
actacaaaactcatttcattacttattttacagcacttgagagcaaccta
ttttgagtaatttggacaaggaaattaaagctttgtagagaagaaaaata
gtacaatctgcagctatataaatgaaactactcaggaaaacacaagcttt
tctgtagctttattcgtgtttcaaattaaaagtctgtacagaaagttcat
gaataactaataaccggacagcaccgtcctggatgtggacagagatcaac
tatgaaagagcagacgcagctacagagcattaaactgcagctaaactaag
cctgaaccctgaaatgttgagagaaacatacagcccaccagatctcatat
gtgcttgaagtagatcctcatgcctactgcacaggaactctggctttgct
gcacatgctttctactgtgaaaaattttaaattatttctgccttgagtat
gcatccttacatttatatttaattttgcctcagatatttttgctttgaag
tgtgggaaagtggctcaatggtatggtgcatgcccagcgtgcataaggtc
ctaggtctgattcccagcaccacatacacacacacacacacacacacaca
cacacacacacacacacacacacacacaaaattggctttaaatatataac
agggggctggtgagatggcttagcaggtaagagcactgactgctcttcca
aaggtcatgagttcaaatcccagcaaccatatggtggctttacaaccatc
cataatgagatctgacgccctttttctggagtgtctgaagtcagctacag
tgtacttacatattaataaataaataaatcagaatatatactttatatat
atgtataagtatatataagtattacacatatatacttaacatatatgtat
accttatatatgatatatatatatatactatatacataataaccaggcta
attcattgccttttggaaaatattatt

gaattcaaaaaaacgagaaacaatctgcctatctaaggacaatttctata
tttcatcattattttggtgatactagataacaatttttaagttcaaaaat
atctaaatttttacatactgttttatcttcccgaaaaagccatccagttt
gggcacgtgtgaaagaaatggatttggttgataaagttgcagaataaata
tcactgctcattaaaatatcaacttcttcttctgtttccatctctgactc
ctagattgggggcaaaagttaaaataagaatctgggttttcttcaaagat
attacaaatttcaaaagacaagtaacatgatattatttattctaaaacca
gaagtttaatttttgtgtctaatatctttaattactcagaattatgacta
ataatgaatctttaaaaggcaggcataaaaagtacagcactttcacactt
ctatataaatataataaacccactgttagtacagaactatttggtctatt
tataaaagttttgtttactttaaatggagataaattagcctccagttatt
gctattgtacacacacacacacacacacacacacacacacacacacacac
acacacacatatatatacatatatatatccatcattgttgtctgaatctt
tccttttcagtaacttctaagagtaagggagtaagggagctgaccataac
agcccttatgtttgggtcgcagatattcagaattgagatatcatcttagt
agatttttcctttaatgagtatgaagtatacttccctgtctcttttgatt
aattttgggttgaaagtctattttattagatactaagatggctactctac
tttgcttcttgggtccatttgcttgaaaaaaatttttccagtgctttact
ctgatataatagctatctttattgctgaaggtatgtttcttaatatgcag
cagaattgatggattctgttttcatatccatttcgtagcctgtgttgttg
tgtgtgtgtgtgtgtgtgaaaacctgagaaatgcatccattgatgtgaag
agaatttttatgaacagttgattgttaattttctcttatttttgaatggg
gtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_157520626_157521754
seq2: B6Ng01-327I08.b_48_1174

seq1  GAATTCTCAGTTGAGGAAACTCAAATGATAGAATTCTAGAGTAATAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGTTGAGGAAACTCAAATGATAGAATTCTAGAGTAATAACAC  50

seq1  TATTTTCCCTTAACTACAAAGCATTGAAGAGAAGGGATACAGAGCCTATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCCTTAACTACAAAGCATTGAAGAGAAGGGATACAGAGCCTATC  100

seq1  TGATTTAGGCATCACATGATTGCCTTAAATTAGACTACCAGGATAATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGGCATCACATGATTGCCTTAAATTAGACTACCAGGATAATCTG  150

seq1  ACTACAAAACTCATTTCATTACTTATTTTACAGCACTTGAGAGCAACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAACTCATTTCATTACTTATTTTACAGCACTTGAGAGCAACCTA  200

seq1  TTTTGAGTAATTTGGACAAGGAAATTAAAGCTTTGTAGAGAAGAAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAATTTGGACAAGGAAATTAAAGCTTTGTAGAGAAGAAAAATA  250

seq1  GTACAATCTGCAGCTATATAAATGAAACTACTCAGGAAAACACAAGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATCTGCAGCTATATAAATGAAACTACTCAGGAAAACACAAGCTTT  300

seq1  TCTGTAGCTTTATTCGTGTTTCAAATTAAAAGTCTGTACAGAAAGTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCTTTATTCGTGTTTCAAATTAAAAGTCTGTACAGAAAGTTCAT  350

seq1  GAATAACTAATAACCGGACAGCACCGTCCTGGATGTGGACAGAGATCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAACTAATAACCGGACAGCACCGTCCTGGATGTGGACAGAGATCAAC  400

seq1  TATGAAAGAGCAGACGCAGCTACAGAGCATTAAACTGCAGCTAAACTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGAGCAGACGCAGCTACAGAGCATTAAACTGCAGCTAAACTAAG  450

seq1  CCTGAACCCTGAAATGTTGAGAGAAACATACAGCCCACCAGATCTCATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCCTGAAATGTTGAGAGAAACATACAGCCCACCAGATCTCATAT  500

seq1  GTGCTTGAAGTAGATCCTCATGCCTACTGCACAGGAACTCTGGCTTTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGAAGTAGATCCTCATGCCTACTGCACAGGAACTCTGGCTTTGCT  550

seq1  GCACATGCTTTCTACTGTGAAAAATTTTAAATTATTTCTGCCTTGAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGCTTTCTACTGTGAAAAATTTTAAATTATTTCTGCCTTGAGTAT  600

seq1  GCATCCTTACATTTATATTTAATTTTGCCTCAGATATTTTTGCTTTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTACATTTATATTTAATTTTGCCTCAGATATTTTTGCTTTGAAG  650

seq1  TGTGGGAAAGTGGCTCAATGGTATGGTGCATGCCCAGCGTGCATAAGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAAAGTGGCTCAATGGTATGGTGCATGCCCAGCGTGCATAAGGTC  700

seq1  CTAGGTCTGATTCCCAGCACCACATACACACACACACACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCTGATTCCCAGCACCACATACACACACACACACACACACACACA  750

seq1  CACACACACACACACACACACACACACAAAATTGGCTTTAAATATATAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACAAAATTGGCTTTAAATATATAAC  800

seq1  AGGGGGCTGGTGAGATGGCTTAGCAGGTAAGAGCACTGACTGCTCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCTGGTGAGATGGCTTAGCAGGTAAGAGCACTGACTGCTCTTCCA  850

seq1  AAGGTCATGAGTTCAAATCCCAGCAACCATATGGTGGC-TTACAACCATC  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGGTCATGAGTTCAAATCCCAGCAACCATATGGTGGCTTTACAACCATC  900

seq1  CATAATGAGATCTGACGCCC-TTTTCTGGAGTGTCTGAAGTCAGCTACAG  948
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CATAATGAGATCTGACGCCCTTTTTCTGGAGTGTCTGAAGTCAGCTACAG  950

seq1  TGTACTTACATATTAATAAATAAATAAATCAGAATATATAC-TTATATAT  997
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGTACTTACATATTAATAAATAAATAAATCAGAATATATACTTTATATAT  1000

seq1  ATGTATAAGTATATATAAGTA-TACACATATATACTT-ACATATATGTAT  1045
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  ATGTATAAGTATATATAAGTATTACACATATATACTTAACATATATGTAT  1050

seq1  A-CTTATATATGATATATATATATATA-TATATATATAAATAACAGGGCT  1093
      | ||||||||||||||||||||||||| |||||| || ||||||  ||||
seq2  ACCTTATATATGATATATATATATATACTATATACAT-AATAACCAGGCT  1099

seq1  A--TCA-TGCTTTGGAAAATATAATAGGAAAATATTATT  1129
      |  ||| ||| ||           | |||||||||||||
seq2  AATTCATTGCCTT-----------TTGGAAAATATTATT  1127


seq1: chr3_157653801_157654894
seq2: B6Ng01-327I08.g_70_1176 (reverse)

seq1  CCCCCA-CCCAT--CAAAATAAGAGAAAA-TAACAATC-ACTGTTCATTA  45
      |||||| |||||   |||||||||||||| |||||||| ||||||||| |
seq2  CCCCCACCCCATTCAAAAATAAGAGAAAATTAACAATCAACTGTTCATAA  50

seq1  ATA-TCTCTCAACATCAATGGACTCAATTCTCCAG-TTTAAAACACACAC  93
      | | |||||  |||||||||||  || |||||  | ||| | ||||||||
seq2  AAATTCTCTTCACATCAATGGATGCATTTCTCAGGTTTTCACACACACAC  100

seq1  ACACACACA--CACACAGGCTAACGAAATGGATATGAAAACAGAATCCAT  141
      |||||||||   ||||||||| ||||||||||||||||||||||||||||
seq2  ACACACACAACAACACAGGCT-ACGAAATGGATATGAAAACAGAATCCAT  149

seq1  C-ATTCTGCTGCATA-TAAGAAACATACC-TCAGCAATAAAGATAGCTAT  188
      | ||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  CAATTCTGCTGCATATTAAGAAACATACCTTCAGCAATAAAGATAGCTAT  199

seq1  TATATCAGAGTAAAGCACTGGAAAAATTTTTTTCAAGCAAATGGACCCAA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAGAGTAAAGCACTGGAAAAATTTTTTTCAAGCAAATGGACCCAA  249

seq1  GAAGC-AAGTAGAGTAGCCATCTTAGTATCTAATAAAATAGACTTTCAA-  286
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAGCAAAGTAGAGTAGCCATCTTAGTATCTAATAAAATAGACTTTCAAC  299

seq1  CCAAAATTAATCAAAAGAGACAGGGAAGTATACTTCATACTCATTAAAGG  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTAATCAAAAGAGACAGGGAAGTATACTTCATACTCATTAAAGG  349

seq1  AAAAATCTACTAAGATGATATCTCAATTCTGAATATCTGCGACCCAAACA  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTACTAAGATGATATCTCAATTCTGAATATCTGCGACCCAAACA  399

seq1  TAAGGGCTGTTATGGTCAGCTCCCTTACTCCCTTACTCTTAGAAGTTACT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCTGTTATGGTCAGCTCCCTTACTCCCTTACTCTTAGAAGTTACT  449

seq1  GAAAAGGAAAGATTCAGACAACAATGATGGATATATATATGTATATATAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAAAGATTCAGACAACAATGATGGATATATATATGTATATATAT  499

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  549

seq1  ACAATAGCAATAACTGGAGGCTAATTTATCTCCATTTAAAGTAAACAAAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAGCAATAACTGGAGGCTAATTTATCTCCATTTAAAGTAAACAAAA  599

seq1  CTTTTATAAATAGACCAAATAGTTCTGTACTAACAGTGGGTTTATTATAT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAAATAGACCAAATAGTTCTGTACTAACAGTGGGTTTATTATAT  649

seq1  TTATATAGAAGTGTGAAAGTGCTGTACTTTTTATGCCTGCCTTTTAAAGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGAAGTGTGAAAGTGCTGTACTTTTTATGCCTGCCTTTTAAAGA  699

seq1  TTCATTATTAGTCATAATTCTGAGTAATTAAAGATATTAGACACAAAAAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTAGTCATAATTCTGAGTAATTAAAGATATTAGACACAAAAAT  749

seq1  TAAACTTCTGGTTTTAGAATAAATAATATCATGTTACTTGTCTTTTGAAA  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCTGGTTTTAGAATAAATAATATCATGTTACTTGTCTTTTGAAA  799

seq1  TTTGTAATATCTTTGAAGAAAACCCAGATTCTTATTTTAACTTTTGCCCC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAATATCTTTGAAGAAAACCCAGATTCTTATTTTAACTTTTGCCCC  849

seq1  CAATCTAGGAGTCAGAGATGGAAACAGAAGAAGAAGTTGATATTTTAATG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGGAGTCAGAGATGGAAACAGAAGAAGAAGTTGATATTTTAATG  899

seq1  AGCAGTGATATTTATTCTGCAACTTTATCAACCAAATCCATTTCTTTCAC  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGATATTTATTCTGCAACTTTATCAACCAAATCCATTTCTTTCAC  949

seq1  ACGTGCCCAAACTGGATGGCTTTTTCGGGAAGATAAAACAGTATGTAAAA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCCCAAACTGGATGGCTTTTTCGGGAAGATAAAACAGTATGTAAAA  999

seq1  ATTTAGATATTTTTGAACTTAAAAATTGTTATCTAGTATCACCAAAATAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATATTTTTGAACTTAAAAATTGTTATCTAGTATCACCAAAATAA  1049

seq1  TGATGAAATATAGAAATTGTCCTTAGATAGGCAGATTGTTTCTCGTTTTT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAATATAGAAATTGTCCTTAGATAGGCAGATTGTTTCTCGTTTTT  1099

seq1  TTGAATTC  1094
      ||||||||
seq2  TTGAATTC  1107


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