BAC Information

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BAC

Clone NameB6Ng01-327M12
Chromosome3 (Build37)
Map Location 126,348,600 - 126,469,794
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327M12.bB6Ng01-327M12.g
ACCGA115227GA115228
length1,161967
definitionB6Ng01-327M12.b B6Ng01-327M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,468,627 - 126,469,794)(126,348,600 - 126,349,564)
sequence
gaattcttgtaggttaaagagcacccattaaaactgtgggtagcagtgaa
ggcaagctgctagcatttgttatcagtgagtgaaaatatctatctagtga
agaaaaatggtatctcatataaggatgaatgcttttactctcggtgagat
gggccttctcttagtatttatgtataactccttcctctattacactgtgt
ttgggttttaagagaaggtttcaattctggggtgccttttgtaactagta
tctgttcacatggtatatcacacagcttcacaattcaggtagacaggttt
attctcgacaaagtggaggccaatagctacaaagcatctattgcagaata
tattacactctgcccggcccagctagcagccactgccagcacagcctttc
cctaaagacactgccaatcacaagccttcaatcttcagaaaggcatcaac
tgatgacatagagtcttgtgggcgatcttagaccatgattatacacttcc
ttttgttctctccgttgcctgcctggcttcccatgttctggaacatcatg
atagcactgcattccccccaatagcagcactcacactctagggattggag
agtggaatctgcatgctcattgaaacacttgggtaaatagctccctcttc
tcttcactgcattgtgagtgctttcaataagggtgccactacttctaatc
gctagtttcaccgaaacattatactgacaacaatcatctgaatttatgtt
ttccccactaaaaaccatagtacatgtaatttaattcactatttttattt
gttatcaataagtgaaaatacctattttttctttcagatcctataataat
gaaattacaatgtactctagagaaattaattaatctttccacactcattc
cttcttctacttaaaatattttccccctctaaatggaacagcaacataca
tgacaaatgtctacaaaaagaaagaccgggaagttagagcaaaatttgct
gtcttaaagggaatctgttctcatattcgcattattgttataagagcaca
aattaaccctattgcattttaaaaaatttagtgtgctatgcaagttcata
tgcataaattaaatcaggctccatgataactggtagaattactgaccact
agtcatttatg
gaattcctgaatgggaggtggggctactgatatgtctttcggctacttgc
tgaaatatacctgcccctttgagctgtaagccttcttccttaatgaattc
tctgaaggtatttctgctagtagataaagccaaagttcacatcatatgta
tctttaattagtgagatctgtatatttatgctcttattattttctgattt
agacaaacattgttattattatttttttttagtcagaacttctaaccaca
ggaccatctctcaaggctctcccttttaatagtgtcatttgtttgtttgt
ttgttctgatgtgtatgtgtttttaatcaagtgattgactgactgatatc
tttacaaattaaattaaatttttttcaattaaatatgataacatttattt
gaattcatcacttttttgtttacatctggatagcctttttcttttcttta
aaaaaaaaaaccttttatttatttacttttacactccagattttctgcac
cctctgactgttgcacatcccatacctcttccctgccccctgtctccatg
cggatgtcccccctcctacaccaccagacctctaaactccctggggcctc
cagtctctcgagggttaggtgcatcttctcagattgaacccagacctgcc
agtcctctgctatatatgtgttggggacctcatatcagctgtgtatgatg
cctggttggtggtccagtgtttgagagatctcggggttccaggttaattg
agactgttgctcctcctacagggtcaccctcctcctcctcagcttctttc
agcttttccctaagtcgaccacaggggtcagcagcttctctccattgggt
tgggtataaatatctgcatctgattctttcagctgcttgttgggtctttc
ggagggcagtcatgataggtcccttttttgtgagtactccatagcctcag
taatagtatcaggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126468627_126469794
seq2: B6Ng01-327M12.b_45_1205 (reverse)

seq1  CATAAATGACTAATTGTTCAATTAATCTAACAGTTTATTCATGGA-ACTG  49
      ||||||||||| | || ||| | | |||| |||||   |||||||  |||
seq2  CATAAATGACT-AGTGGTCAGTAATTCTACCAGTT--ATCATGGAGCCTG  47

seq1  ATTTAATTTATGGCATTATGAAACTTTGCATAGCACACTAAATTTTTTTT  99
      ||||||||||| ||| ||||||   |||||||||||||||||  ||||||
seq2  ATTTAATTTAT-GCA-TATGAA--CTTGCATAGCACACTAAA--TTTTTT  91

seq1  AAAATGCAATAGGTTAATTTTGTGCTCTATTAAACAATAATGCGAATATG  149
      ||||||||||||| | | |||||||||| |  ||||||||||||||||||
seq2  AAAATGCAATAGGGTTAATTTGTGCTCT-TATAACAATAATGCGAATATG  140

seq1  AGAACAGATTCCCTTTAAGACAGCAAATTTTGCTCTAACTT-CCGGTCTT  198
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGAACAGATTCCCTTTAAGACAGCAAATTTTGCTCTAACTTCCCGGTCTT  190

seq1  TCTTTTTGTAGACATTTGTCATGTATGTTGCTGTTCCATTTAGAGGGGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTAGACATTTGTCATGTATGTTGCTGTTCCATTTAGAGGGGGA  240

seq1  AAATATTTTAAGTAGAAGAAGGAATGAGTGTGGAAAGATTAATTAATTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTAAGTAGAAGAAGGAATGAGTGTGGAAAGATTAATTAATTTC  290

seq1  TCTAGAGTACATTGTAATTTCATTATTATAGGATCTGAAAG-AAAAATAG  347
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTAGAGTACATTGTAATTTCATTATTATAGGATCTGAAAGAAAAAATAG  340

seq1  GTATTTTCACTTATTGATAACAAATAAAAATAGTGAATTAAATTACATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTCACTTATTGATAACAAATAAAAATAGTGAATTAAATTACATGT  390

seq1  ACTATGGTTTTTAGTGGGGAAAACATAAATTCAGATGATTGTTGTCAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGGTTTTTAGTGGGGAAAACATAAATTCAGATGATTGTTGTCAGTA  440

seq1  TAATGTTTCGGTGAAACTAGCGATTAGAAGTAGTGGCACCCTTATTGAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTTCGGTGAAACTAGCGATTAGAAGTAGTGGCACCCTTATTGAAA  490

seq1  GCACTCACAATGCAGTGAAGAGAAGAGGGAGCTATTTACCCAAGTGTTTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCACAATGCAGTGAAGAGAAGAGGGAGCTATTTACCCAAGTGTTTC  540

seq1  AATGAGCATGCAGATTCCACTCTCCAATCCCTAGAGTGTGAGTGCTGCTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATGCAGATTCCACTCTCCAATCCCTAGAGTGTGAGTGCTGCTA  590

seq1  TTGGGGGGAATGCAGTGCTATCATGATGTTCCAGAACATGGGAAGCCAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGAATGCAGTGCTATCATGATGTTCCAGAACATGGGAAGCCAGG  640

seq1  CAGGCAACGGAGAGAACAAAAGGAAGTGTATAATCATGGTCTAAGATCGC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAACGGAGAGAACAAAAGGAAGTGTATAATCATGGTCTAAGATCGC  690

seq1  CCACAAGACTCTATGTCATCAGTTGATGCCTTTCTGAAGATTGAAGGCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGACTCTATGTCATCAGTTGATGCCTTTCTGAAGATTGAAGGCTT  740

seq1  GTGATTGGCAGTGTCTTTAGGGAAAGGCTGTGCTGGCAGTGGCTGCTAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGGCAGTGTCTTTAGGGAAAGGCTGTGCTGGCAGTGGCTGCTAGC  790

seq1  TGGGCCGGGCAGAGTGTAATATATTCTGCAATAGATGCTTTGTAGCTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCGGGCAGAGTGTAATATATTCTGCAATAGATGCTTTGTAGCTATT  840

seq1  GGCCTCCACTTTGTCGAGAATAAACCTGTCTACCTGAATTGTGAAGCTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCACTTTGTCGAGAATAAACCTGTCTACCTGAATTGTGAAGCTGT  890

seq1  GTGATATACCATGTGAACAGATACTAGTTACAAAAGGCACCCCAGAATTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATACCATGTGAACAGATACTAGTTACAAAAGGCACCCCAGAATTG  940

seq1  AAACCTTCTCTTAAAACCCAAACACAGTGTAATAGAGGAAGGAGTTATAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTCTCTTAAAACCCAAACACAGTGTAATAGAGGAAGGAGTTATAC  990

seq1  ATAAATACTAAGAGAAGGCCCATCTCACCGAGAGTAAAAGCATTCATCCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACTAAGAGAAGGCCCATCTCACCGAGAGTAAAAGCATTCATCCT  1040

seq1  TATATGAGATACCATTTTTCTTCACTAGATAGATATTTTCACTCACTGAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAGATACCATTTTTCTTCACTAGATAGATATTTTCACTCACTGAT  1090

seq1  AACAAATGCTAGCAGCTTGCCTTCACTGCTACCCACAGTTTTAATGGGTG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATGCTAGCAGCTTGCCTTCACTGCTACCCACAGTTTTAATGGGTG  1140

seq1  CTCTTTAACCTACAAGAATTC  1168
      |||||||||||||||||||||
seq2  CTCTTTAACCTACAAGAATTC  1161

seq1: chr3_126348600_126349564
seq2: B6Ng01-327M12.g_67_1033

seq1  GAATTCCTGAATGGGAGGTGGGGCTACTGATATGTCTTTCGGCTACTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAATGGGAGGTGGGGCTACTGATATGTCTTTCGGCTACTTGC  50

seq1  TGAAATATACCTGCCCCTTTGAGCTGTAAGCCTTCTTCCTTAATGAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATACCTGCCCCTTTGAGCTGTAAGCCTTCTTCCTTAATGAATTC  100

seq1  TCTGAAGGTATTTCTGCTAGTAGATAAAGCCAAAGTTCACATCATATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGTATTTCTGCTAGTAGATAAAGCCAAAGTTCACATCATATGTA  150

seq1  TCTTTAATTAGTGAGATCTGTATATTTATGCTCTTATTATTTTCTGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATTAGTGAGATCTGTATATTTATGCTCTTATTATTTTCTGATTT  200

seq1  AGACAAACATTGTTATTATTATTTTTTTTTAGTCAGAACTTCTAACCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACATTGTTATTATTATTTTTTTTTAGTCAGAACTTCTAACCACA  250

seq1  GGACCATCTCTCAAGGCTCTCCCTTTTAATAGTGTCATTTGTTTGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATCTCTCAAGGCTCTCCCTTTTAATAGTGTCATTTGTTTGTTTGT  300

seq1  TTGTTCTGATGTGTATGTGTTTTTAATCAAGTGATTGACTGACTGATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGATGTGTATGTGTTTTTAATCAAGTGATTGACTGACTGATATC  350

seq1  TTTACAAATTAAATTAAATTTTTTTCAATTAAATATGATAACATTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAATTAAATTAAATTTTTTTCAATTAAATATGATAACATTTATTT  400

seq1  GAATTCATCACTTTTTTGTTTACATCTGGATAGCCTTTTTCTTTTCTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTTTTTTGTTTACATCTGGATAGCCTTTTTCTTTTCTTTA  450

seq1  AAAAAAAAAACCTTTTATTTATTTACTTTTACACTCCAGATTTTCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCTTTTATTTATTTACTTTTACACTCCAGATTTTCTGCAC  500

seq1  CCTCTGACTGTTGCACATCCCATACCTCTTCCCTGCCCCCTGTCTCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTGTTGCACATCCCATACCTCTTCCCTGCCCCCTGTCTCCATG  550

seq1  CGGATGTCCCCCCTCCTACACCACCAGACCTCTAAACTCCCTGGGGCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGTCCCCCCTCCTACACCACCAGACCTCTAAACTCCCTGGGGCCTC  600

seq1  CAGTCTCTCGAGGGTTAGGTGCATCTTCTCAGATTGAACCCAGACCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTCGAGGGTTAGGTGCATCTTCTCAGATTGAACCCAGACCTGCC  650

seq1  AGTCCTCTGCTATATATGTGTTGGGGACCTCATATCAGCTGTGTATGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGCTATATATGTGTTGGGGACCTCATATCAGCTGTGTATGATG  700

seq1  CCTGGTTGGTGGTCCAGTGTTTGAGAGATCTCGGGGTTCCAGGTTAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGGTGGTCCAGTGTTTGAGAGATCTCGGGGTTCCAGGTTAATTG  750

seq1  AGACTGTTGCTCCTCCTACAGGGTCACCCTCCTCCTCCTCAGCTTCTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTGCTCCTCCTACAGGGTCACCCTCCTCCTCCTCAGCTTCTTTC  800

seq1  AGCTTTTCCCTAAGTCGACCACAGGGGTCAGCAGCTTCTCTCCATT-GGT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCTTTTCCCTAAGTCGACCACAGGGGTCAGCAGCTTCTCTCCATTGGGT  850

seq1  TGGGTATAAATATCTGCATCTGATTCTTTCAGCTGCTTGTTGGGTCTTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAAATATCTGCATCTGATTCTTTCAGCTGCTTGTTGGGTCTTTC  900

seq1  GGAGGGCAGTCATGATAGGTCCC-TTTTTGTGAGTACTCCATAGCCTCAG  948
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGAGGGCAGTCATGATAGGTCCCTTTTTTGTGAGTACTCCATAGCCTCAG  950

seq1  TAATAGTATCAGGCCTT  965
      |||||||||||||||||
seq2  TAATAGTATCAGGCCTT  967