BAC Information

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BAC

Clone NameB6Ng01-328H20
Chromosome3 (Build37)
Map Location 65,553,031 - 65,673,829
singlet/doubletdoublet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328H20.bB6Ng01-328H20.g
ACCGA115740GA115741
length1,2021,173
definitionB6Ng01-328H20.b B6Ng01-328H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,672,622 - 65,673,829)(65,553,031 - 65,554,199)
sequence
gaattcccaccccaggaaccagagagtcacagcgtccagctcagctctta
gacatctgctctgcctgtttaggaggcaagtgaaaagatggtttcctgaa
ggtgacggcagaatccagaggctcttcctcagcacagatctcagcctctg
tattatctgtatgtcgctattcctagtcatgtgagagaaatccccaaact
accattattatgtttggtttgtttttcaaatgcaggacttcctgttcaaa
tgggtgcaaaccaaagcacacttttggagtactgtaatgaagaaggagca
gggctatccacaggcacccaggggccaactccacaaatgctcctaattct
acctgggacacactgcacatctcaaatgtgagttcgtgattcctattcct
aatcctttctactggtctgcccctttgcatccatagaaactcaatgcaga
tcgagaaaccaggaaacctggcttgtggagggattaggtctcataggaga
ctacgatcagtaatctgccatggtattattctatgagagttcatttttat
tttttttaaaaaaagcaagatctaaactatatgagagctttttctcttct
ttttggtaatatagtacaagagaaagttccggaagtggcaacttaattcg
tatctaatttcagcaaaataattgcagactgctttcagcttgaatgagca
gtgaggtgaggctcccattgttgcttattttagtagcactccctcaggac
gaatgctagctattttcagttgtatgtgggaaaaccatgggcgctgccaa
gcggtggcaagctggcatcgtgtgtgatctgtcaaccagattccactcag
attctttacttattgcaattggcatatgaccttttttttttctttcttta
ttcagtttggggttccgcttacctccttctctgccgtcctaccttccagc
ctatctctacccacacaggttcctttttggggggctatttcataataaca
gtgtgagtgccaagtggttgtataaatcctgagcagatatatgaaacaaa
gcacactgctctgaaactcatagggaccagtatgtaccaatccaccaaac
actagctaatacacagtgaaatccataagtttctctctgtaggtttaata
tagatggttggctgaaggaaacctaatgacttctggtacatgaaccggta
ca

gaattccaaaagggcacctggaaatacctaactcttcttccataattaaa
aggaaaaaggtttcttccccttacaaaataattggctgctgacctagcta
atccctgaatttgtcctatggtggtgctgtccagttacctgcctgcaaga
acaacatctaggactgtgttactggtaaatgtggtagcttggagggatgg
gtaagtaaagggatttgtctttaaaagtatattcttgtacccctgtcgta
tgtctgaattacaattgccaatatgcggaaaactctttggttttgctaag
tgctccaggtggttcttataccaggacagtttgattttagcttaaaaatt
aattaggaatttaagaaaaaaggagtctacacggtaacacagcgggttat
ggtggtggcaccagcttctgttttgaaccagaaatgcagtttttcagttt
ttttcagttaacagttgccatgtacaatttaagccacaaaggaagttatt
gaaaaaataattttaggaagtcagaatctttgagaaggttgaataaccaa
gcttaggaagtagctaggaatctgctagctcccagccaaaatcatgccac
agatctattcagtgaacacacagtgactgtgtccaaagcagtgcagccct
ctgacctgccatctcctgtggccatgcaggccactggatctgggattctg
catggatttctctatggtttcaacatttggaactggttgttaacagatca
taagtagttagtctagaaatgagcagctagaatggccacccagtcttccc
agatgtagttacttcctactgctgtcttgctgctgtaaatggccatgaat
tgcagagtaggatttcagcaaatccagaagtggagtcagagtgaaattct
ttaatccatgtttagggataataaagaaaagtcagtgacatgtatgaagc
caagttcagagaaccacatgaaatcaggaaactgcacatagcagaggacc
acaggtgcgttctgctgtgggcagagccaggcagaggacagcggttaatt
ggcctagtttatagtatcagacaccgattcctgttggtagcccttaatcc
gttagaaagttgttgacctccttgtcagacaagatgccccacggttgccc
cacagctggatccttgttgtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65672622_65673829
seq2: B6Ng01-328H20.b_45_1246 (reverse)

seq1  TGTA-CGGTTCATGTACCAGGAGTCATTTAAGGTCTCCTCTCAGCCCTAT  49
      |||| ||||||||||||||| |||||||  |||| |||| ||||||    
seq2  TGTACCGGTTCATGTACCAGAAGTCATT--AGGTTTCCT-TCAGCC---A  44

seq1  CCCATCCTATAT--AAACTACAGAGAGAAATGTAT-GATTTCACTGTGTA  96
       |||| ||||||  || |||||||||||||  ||| ||||||||||||||
seq2  ACCAT-CTATATTAAACCTACAGAGAGAAACTTATGGATTTCACTGTGTA  93

seq1  TTAGCTAGTGTTT-GTTGATGGGTACATACTGGTCCCTATGAGTTTCCAG  145
      ||||||||||||| || ||| ||||||||||||||||||||||||||   
seq2  TTAGCTAGTGTTTGGTGGATTGGTACATACTGGTCCCTATGAGTTTC--A  141

seq1  GAGCAGTGTGCTTTGTTTCATATATCTTGCTCAGGATTTTATACAACCCA  195
      |||||||||||||||||||||||||| ||||||||| ||||||||| |||
seq2  GAGCAGTGTGCTTTGTTTCATATATC-TGCTCAGGA-TTTATACAA-CCA  188

seq1  CTTGGCACTCACACTGTTATTATGAAATAGCCCCCCAAAAAGGAACCTGT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCACTCACACTGTTATTATGAAATAGCCCCCCAAAAAGGAACCTGT  238

seq1  GTGGGTAGAGATAGGCTGGAAGGTAGGACGGCAGAGAAGGAGGTAAGCGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGAGATAGGCTGGAAGGTAGGACGGCAGAGAAGGAGGTAAGCGG  288

seq1  AACCCCAAACTGAATAAAGAAAG-AAAAAAAAAGGTCATATGCCAATTGC  344
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACCCCAAACTGAATAAAGAAAGAAAAAAAAAAGGTCATATGCCAATTGC  338

seq1  AATAAGTAAAGAATCTGAGTGGAATCTGGTTGACAGATCACACACGATGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAAGAATCTGAGTGGAATCTGGTTGACAGATCACACACGATGC  388

seq1  CAGCTTGCCACCGCTTGGCAGCGCCCATGGTTTTCCCACATACAACTGAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCACCGCTTGGCAGCGCCCATGGTTTTCCCACATACAACTGAA  438

seq1  AATAGCTAGCATTCGTCCTGAGGGAGTGCTACTAAAATAAGCAACAATGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTAGCATTCGTCCTGAGGGAGTGCTACTAAAATAAGCAACAATGG  488

seq1  GAGCCTCACCTCACTGCTCATTCAAGCTGAAAGCAGTCTGCAATTATTTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCACCTCACTGCTCATTCAAGCTGAAAGCAGTCTGCAATTATTTT  538

seq1  GCTGAAATTAGATACGAATTAAGTTGCCACTTCCGGAACTTTCTCTTGTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAATTAGATACGAATTAAGTTGCCACTTCCGGAACTTTCTCTTGTA  588

seq1  CTATATTACCAAAAAGAAGAGAAAAAGCTCTCATATAGTTTAGATCTTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTACCAAAAAGAAGAGAAAAAGCTCTCATATAGTTTAGATCTTGC  638

seq1  TTTTTTTAAAAAAAATAAAAATGAACTCTCATAGAATAATACCATGGCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAAAAAAATAAAAATGAACTCTCATAGAATAATACCATGGCAG  688

seq1  ATTACTGATCGTAGTCTCCTATGAGACCTAATCCCTCCACAAGCCAGGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGATCGTAGTCTCCTATGAGACCTAATCCCTCCACAAGCCAGGTT  738

seq1  TCCTGGTTTCTCGATCTGCATTGAGTTTCTATGGATGCAAAGGGGCAGAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTTTCTCGATCTGCATTGAGTTTCTATGGATGCAAAGGGGCAGAC  788

seq1  CAGTAGAAAGGATTAGGAATAGGAATCACGAACTCACATTTGAGATGTGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAAGGATTAGGAATAGGAATCACGAACTCACATTTGAGATGTGC  838

seq1  AGTGTGTCCCAGGTAGAATTAGGAGCATTTGTGGAGTTGGCCCCTGGGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTCCCAGGTAGAATTAGGAGCATTTGTGGAGTTGGCCCCTGGGTG  888

seq1  CCTGTGGATAGCCCTGCTCCTTCTTCATTACAGTACTCCAAAAGTGTGCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGATAGCCCTGCTCCTTCTTCATTACAGTACTCCAAAAGTGTGCT  938

seq1  TTGGTTTGCACCCATTTGAACAGGAAGTCCTGCATTTGAAAAACAAACCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGCACCCATTTGAACAGGAAGTCCTGCATTTGAAAAACAAACCA  988

seq1  AACATAATAATGGTAGTTTGGGGATTTCTCTCACATGACTAGGAATAGCG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATAATGGTAGTTTGGGGATTTCTCTCACATGACTAGGAATAGCG  1038

seq1  ACATACAGATAATACAGAGGCTGAGATCTGTGCTGAGGAAGAGCCTCTGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGATAATACAGAGGCTGAGATCTGTGCTGAGGAAGAGCCTCTGG  1088

seq1  ATTCTGCCGTCACCTTCAGGAAACCATCTTTTCACTTGCCTCCTAAACAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCGTCACCTTCAGGAAACCATCTTTTCACTTGCCTCCTAAACAG  1138

seq1  GCAGAGCAGATGTCTAAGAGCTGAGCTGGACGCTGTGACTCTCTGGTTCC  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCAGATGTCTAAGAGCTGAGCTGGACGCTGTGACTCTCTGGTTCC  1188

seq1  TGGGGTGGGAATTC  1208
      ||||||||||||||
seq2  TGGGGTGGGAATTC  1202


seq1: chr3_65553031_65554199
seq2: B6Ng01-328H20.g_65_1237

seq1  GAATTCCAAAAGGGCACCTGGAAATACCTAACTCTTCTTCCATAATTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAAGGGCACCTGGAAATACCTAACTCTTCTTCCATAATTAAA  50

seq1  AGGAAAAAGGTTTCTTCCCCTTACAAAATAATTGGCTGCTGACCTAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGGTTTCTTCCCCTTACAAAATAATTGGCTGCTGACCTAGCTA  100

seq1  ATCCCTGAATTTGTCCTATGGTGGTGCTGTCCAGTTACCTGCCTGCAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGAATTTGTCCTATGGTGGTGCTGTCCAGTTACCTGCCTGCAAGA  150

seq1  ACAACATCTAGGACTGTGTTACTGGTAAATGTGGTAGCTTGGAGGGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCTAGGACTGTGTTACTGGTAAATGTGGTAGCTTGGAGGGATGG  200

seq1  GTAAGTAAAGGGATTTGTCTTTAAAAGTATATTCTTGTACCCCTGTCGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAAAGGGATTTGTCTTTAAAAGTATATTCTTGTACCCCTGTCGTA  250

seq1  TGTCTGAATTACAATTGCCAATATGCGGAAAACTCTTTGGTTTTGCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAATTACAATTGCCAATATGCGGAAAACTCTTTGGTTTTGCTAAG  300

seq1  TGCTCCAGGTGGTTCTTATACCAGGACAGTTTGATTTTAGCTTAAAAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCAGGTGGTTCTTATACCAGGACAGTTTGATTTTAGCTTAAAAATT  350

seq1  AATTAGGAATTTAAGAAAAAAGGAGTCTACACGGTAACACAGCGGGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGGAATTTAAGAAAAAAGGAGTCTACACGGTAACACAGCGGGTTAT  400

seq1  GGTGGTGGCACCAGCTTCTGTTTTGAACCAGAAATGCAGTTTTTCAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGCACCAGCTTCTGTTTTGAACCAGAAATGCAGTTTTTCAGTTT  450

seq1  TTTTCAGTTAACAGTTGCCATGTACAATTTAAGCCACAAAGGAAGTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTTAACAGTTGCCATGTACAATTTAAGCCACAAAGGAAGTTATT  500

seq1  GAAAAAATAATTTTAGGAAGTCAGAATCTTTGAGAAGGTTGAATAACCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATAATTTTAGGAAGTCAGAATCTTTGAGAAGGTTGAATAACCAA  550

seq1  GCTTAGGAAGTAGCTAGGAATCTGCTAGCTCCCAGCCAAAATCATGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGAAGTAGCTAGGAATCTGCTAGCTCCCAGCCAAAATCATGCCAC  600

seq1  AGATCTATTCAGTGAACACACAGTGACTGTGTCCAAAGCAGTGCAGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATTCAGTGAACACACAGTGACTGTGTCCAAAGCAGTGCAGCCCT  650

seq1  CTGACCTGCCATCTCCTGTGGCCATGCAGGCCACTGGATCTGGGATTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGCCATCTCCTGTGGCCATGCAGGCCACTGGATCTGGGATTCTG  700

seq1  CATGGATTTCTCTATGGTTTCAACATTTGGAACTGGTTGTTAACAGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTTCTCTATGGTTTCAACATTTGGAACTGGTTGTTAACAGATCA  750

seq1  TAAGTAGTTAGTCTAGAAATGAGCAGCTAGAATGGCCACCCAGTCTTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGTTAGTCTAGAAATGAGCAGCTAGAATGGCCACCCAGTCTTCCC  800

seq1  AGATGTAGTTACTTCCTACTGCTGTCTTGCTGCTGTAAATGGCCATGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGTTACTTCCTACTGCTGTCTTGCTGCTGTAAATGGCCATGAAT  850

seq1  TGCAGAGTAGGATTTCAGCAAATCCAGAAGTGGAGTCAGAGTGAAATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTAGGATTTCAGCAAATCCAGAAGTGGAGTCAGAGTGAAATTCT  900

seq1  TTAATCCATGTTTAGGGATAATAAAGAAAAGTCAGTGACATGTATGAAAG  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAATCCATGTTTAGGGATAATAAAGAAAAGTCAGTGACATGTATG-AAG  949

seq1  CCAAGTTCAGAGAA-CACATGAAATCAGGAAAACTGCACATAGCAGAGGA  999
      |||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  CCAAGTTCAGAGAACCACATGAAATCAGG-AAACTGCACATAGCAGAGGA  998

seq1  -CACAGGTGCG-TCTGCTGTGGGGCAGAG-CAAGCAGAGGACAGCGG-TA  1045
       |||||||||| |||||||| |||||||| || |||||||||||||| ||
seq2  CCACAGGTGCGTTCTGCTGT-GGGCAGAGCCAGGCAGAGGACAGCGGTTA  1047

seq1  ATTGGCTAGGTTTATAGTATCAGACA-CGAATCCTGTTGGTTAGGCCTTA  1094
      ||||||   ||||||||||||||||| ||| ||||||||| ||| |||| 
seq2  ATTGGCCTAGTTTATAGTATCAGACACCGATTCCTGTTGG-TAGCCCTT-  1095

seq1  AATCCGTTAGACAGTTGTTGAC--TCTTGTCAGGACAAAGATG--CCACG  1140
      ||||||||||| ||||||||||   ||||||| ||| ||||||  |||||
seq2  AATCCGTTAGAAAGTTGTTGACCTCCTTGTCA-GAC-AAGATGCCCCACG  1143

seq1  GTTGCAC--CAGCTGGGATCATTGTTGTGGG  1169
      ||||| |  ||||| ||||| ||||||||||
seq2  GTTGCCCCACAGCT-GGATCCTTGTTGTGGG  1173


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