BAC Information

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BAC

Clone NameB6Ng01-328H24
Chromosome3 (Build37)
Map Location 82,955,767 - 83,112,161
singlet/doubletdoublet
Overlap geneDchs2
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream gene1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328H24.bB6Ng01-328H24.g
ACCGA115747GA115748
length1,0391,144
definitionB6Ng01-328H24.b B6Ng01-328H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,955,767 - 82,956,806)(83,110,998 - 83,112,161)
sequence
gaattcagaatagagttggtcagtgactgtccagggtcccctcaggtaag
aagaagagccagttgtccaggcacctgagggtaaggttccctggacacat
gtagaaatgaagacttgagtggaggcagtgtatcttaggtgatcctgaga
acagcaccaggaagagagcgtgtcgatcagggctaggctcggaggatagt
gagtcaccatatagactgcagacatagcagtgaccttagcttcccttaga
gaagtctctggctagaaacaggcttcacatctgtcctcagctggcttatg
gagtgcctttcagtaaagggcacaccattgctattatctaagggcagcct
ccaggtagatttcagtatccacctggaggaatccacctgtgtgcttgcac
cacaacccatctccagctgcccccctccatagtaggagagagacactttg
cagattaagttaattaaggctctggaaatgagatcagaccggctttgggc
tttggggtaattccactgactgatattatggaagaaaggaaagggaggct
tgagacagacaaagatcgggggaatctgtgctgctaccacccaagaaatg
caaatggattgtttgctcaaagtctctagagggggcttagccctgttgat
acttgacttcatttttttttttttaccaagaactgagtgagagagctggg
gagatgactcagcaggtcagagcatttgctgggcaagcaggaggacctga
attcaagtccctagacactggtcaaaagtcttgtctggtctccctggaca
agcattaaaaaccttgtgtgttcctgagcatgtctatgattttcaggctg
tgatggccagagatgggagagtcacagggttttctggctactagcctggt
cccaggttcaattttagtctgatctcaagaaattaaggtgaaccatgata
ggcaggacactggcatcctttctggattctgtgcttgcctgtgtgtatgt
acacatgtgcgtgtacaggcaccctctctctcctccccc
gaattctattttgtcagtctccatggctcccaggatctgtggccaggggc
cattttgagagagatcctattgtctaaactgagccaccccagaagcctaa
gaacaaggagcaaccacaggttagaccctgatgagaggaggctttgaaga
gtcatggggaatgggaggatcacacatggcaaccacaggttagaccctga
tgagaggaggctttgaagagtcatggagaataggaggatcacacatggca
accacaggttagatcctaatgagagaaggctttgaagagtcatggagaat
gggaggatcacacatgggcaaagaaaaaagggcaacgagcacaaggctca
aggcagtgaaatgttcagggaagtggtccagccctcagtaggagatgccc
tcatgtggggagccgcacttatatttgccattacaagatggcgctgacag
ctgtgttctaagtagtaaataatctgcacatgtgcaggggcagttttccc
gccatgtgctctgcctttctcgtgatgacaactgggccgatgggttgcag
ccaatcagggagtgacacgtcctaggcggaggataattctccttaaaagg
gacgggattctggcactctctctctttgtctctttctcttcgtcttttcc
tctgctctctccctctctgcccctctctctgcctctctctctgcgtctct
ctctctctcttcctctctgcctctctttgccgcgctcttcctctcttgct
cctgagtaagcaataaagctttgccgcagaagattctggcttgttgcgtc
tttcctggccggtcgcgaacgcgcgtaagaccctcagtacctgagactaa
cctggaagttcgataatcttgagcctagagtcaacaggtagatcaacttc
agaagccatcttcccactgtttacactgtggagtcaagaggatggtactt
accatccagaactacatccccagaaggtgatcatgcttactggatttgag
tatagagacagcctacctgtatagatcctaacctactagagacacccctc
aactaaatatacctaccccaggatggaacatctgggacactctgaaatat
ggcaagtacctatccaaggactcaaacttaatgtgacaagcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82955767_82956806
seq2: B6Ng01-328H24.b_48_1086

seq1  GAATTCAGAATAGAGTTGGTCAGTGACTGTCCAGGGTCCCCTCAGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAATAGAGTTGGTCAGTGACTGTCCAGGGTCCCCTCAGGTAAG  50

seq1  AAGAAGAGCCAGTTGTCCAGGCACCTGAGGGTAAGGTTCCCTGGACACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGCCAGTTGTCCAGGCACCTGAGGGTAAGGTTCCCTGGACACAT  100

seq1  GTAGAAATGAAGACTTGAGTGGAGGCAGTGTATCTTAGGTGATCCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATGAAGACTTGAGTGGAGGCAGTGTATCTTAGGTGATCCTGAGA  150

seq1  ACAGCACCAGGAAGAGAGCGTGTCGATCAGGGCTAGGCTCGGAGGATAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCAGGAAGAGAGCGTGTCGATCAGGGCTAGGCTCGGAGGATAGT  200

seq1  GAGTCACCATATAGACTGCAGACATAGCAGTGACCTTAGCTTCCCTTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACCATATAGACTGCAGACATAGCAGTGACCTTAGCTTCCCTTAGA  250

seq1  GAAGTCTCTGGCTAGAAACAGGCTTCACATCTGTCCTCAGCTGGCTTATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTCTGGCTAGAAACAGGCTTCACATCTGTCCTCAGCTGGCTTATG  300

seq1  GAGTGCCTTTCAGTAAAGGGCACACCATTGCTATTATCTAAGGGCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCCTTTCAGTAAAGGGCACACCATTGCTATTATCTAAGGGCAGCCT  350

seq1  CCAGGTAGATTTCAGTATCCACCTGGAGGAATCCACCTGTGTGCTTGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGATTTCAGTATCCACCTGGAGGAATCCACCTGTGTGCTTGCAC  400

seq1  CACAACCCATCTCCAGCTGCCCCCCTCCATAGTAGGAGAGAGACACTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCATCTCCAGCTGCCCCCCTCCATAGTAGGAGAGAGACACTTTG  450

seq1  CAGATTAAGTTAATTAAGGCTCTGGAAATGAGATCAGACCGGCTTTGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAAGTTAATTAAGGCTCTGGAAATGAGATCAGACCGGCTTTGGGC  500

seq1  TTTGGGGTAATTCCACTGACTGATATTATGGAAGAAAGGAAAGGGAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGTAATTCCACTGACTGATATTATGGAAGAAAGGAAAGGGAGGCT  550

seq1  TGAGACAGACAAAGATCGGGGGAATCTGTGCTGCTACCACCCAAGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGACAAAGATCGGGGGAATCTGTGCTGCTACCACCCAAGAAATG  600

seq1  CAAATGGATTGTTTGCTCAAAGTCTCTAGAGGGGGCTTAGCCCTGTTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGATTGTTTGCTCAAAGTCTCTAGAGGGGGCTTAGCCCTGTTGAT  650

seq1  ACTTGACTTCATTTTTTTTTTTTTACCAAGAACTGAGTGAGAGAGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACTTCATTTTTTTTTTTTTACCAAGAACTGAGTGAGAGAGCTGGG  700

seq1  GAGATGACTCAGCAGGTCAGAGCATTTGCTGGGCAAGCAGGAGGACCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGACTCAGCAGGTCAGAGCATTTGCTGGGCAAGCAGGAGGACCTGA  750

seq1  ATTCAAGTCCCTAGACACTGGTCAAAAGTCTTGTCTGGTCTCCCTGGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTCCCTAGACACTGGTCAAAAGTCTTGTCTGGTCTCCCTGGACA  800

seq1  AGCATTAAAAACCTTGTGTGTTCCTGAGCATGTCTATGATTTTCAGGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAAAAACCTTGTGTGTTCCTGAGCATGTCTATGATTTTCAGGCTG  850

seq1  TGATGGCCAGAGATGGGAGAGTCACAGGGTTTTCTGGCTACTAGCCTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCCAGAGATGGGAGAGTCACAGGGTTTTCTGGCTACTAGCCTGGT  900

seq1  CCCAGGTTCAATTTTAGTCTGATCTCAAGGAAATTAGGTGAACCATGATA  950
      ||||||||||||||||||||||||||||| || | |||||||||||||||
seq2  CCCAGGTTCAATTTTAGTCTGATCTCAAGAAATTAAGGTGAACCATGATA  950

seq1  GGCAGGACACTTGGCATCCTTTTCTGGATTCTGTGCTTGCCTGTGTGTAT  1000
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  GGCAGGACAC-TGGCATCC-TTTCTGGATTCTGTGCTTGCCTGTGTGTAT  998

seq1  GTACACATGTGCGTGTACAGCCACCC-CTCTCCTCTCCCCC  1040
      |||||||||||||||||||| ||||| |||||  |||||||
seq2  GTACACATGTGCGTGTACAGGCACCCTCTCTCTCCTCCCCC  1039

seq1: chr3_83110998_83112161
seq2: B6Ng01-328H24.g_66_1209 (reverse)

seq1  GCTGCTTGTCACATTTAGTTTTGTAGTCTGTGGAATAGGTAGGTTTTCCC  50
      ||||||||||||||| |||||   ||||  ||| |||||||    || ||
seq2  GCTGCTTGTCACATTAAGTTT--GAGTCCTTGG-ATAGGTA---CTTGCC  44

seq1  ATATTTCAGAGTGTCCCCAGATTGTCCATCCTGGGGTAGTTAATATTTAA  100
      |||||||||||||| |||||||  ||||||||||||||| | |||||| |
seq2  ATATTTCAGAGTGT-CCCAGATGTTCCATCCTGGGGTAGGT-ATATTT-A  91

seq1  GTTGAGGGGTGTCTCCTAAGTAGGTTAGGATCTATACAGGTAGGCTTGTC  150
      |||||||||||||||   ||||||||||||||||||||||||||| ||||
seq2  GTTGAGGGGTGTCTC--TAGTAGGTTAGGATCTATACAGGTAGGC-TGTC  138

seq1  TCCTATACCTTCAAAATCCAGTAAGCATTGATCACCCTTCTTGGGGATGT  200
      | ||||||  || |||||||||||||| |||||| ||||| |||||||||
seq2  T-CTATAC--TC-AAATCCAGTAAGCA-TGATCA-CCTTC-TGGGGATGT  181

seq1  AGTTCTGGATGGTAAGTACCATCCTCTTGACTCCACAGTTGTAAACAGTG  250
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGTTCTGGATGGTAAGTACCATCCTCTTGACTCCACAG-TGTAAACAGTG  230

seq1  GGAAGATGGCTTCTGAAGTTGATCTACCTGTTGACTCTAGGCTCAAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGATGGCTTCTGAAGTTGATCTACCTGTTGACTCTAGGCTCAAGATT  280

seq1  ATCGAACTTCCAGGTTAGTCTCAGGTACTGAGGGTCTTACGCGCGTTCGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAACTTCCAGGTTAGTCTCAGGTACTGAGGGTCTTACGCGCGTTCGC  330

seq1  GACCGGCCAGGAAAGACGCAACAAGCCAGAATCTTCTGCGGCAAAGCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCGGCCAGGAAAGACGCAACAAGCCAGAATCTTCTGCGGCAAAGCTTT  380

seq1  ATTGCTTACTCAGGAGCAAGAGAGGAAGAGCGCGGCAAAGAGAGGCAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTACTCAGGAGCAAGAGAGGAAGAGCGCGGCAAAGAGAGGCAGAG  430

seq1  AGGAAGAGAGAGAGAGAGACGCAGAGAGAGAGGCAGAGAGAGGGGCAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAGAGAGAGAGACGCAGAGAGAGAGGCAGAGAGAGGGGCAGAG  480

seq1  AGGGAGAGAGCAGAGGAAAAGACGAAGAGAAAGAGACAAAGAGAGAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGCAGAGGAAAAGACGAAGAGAAAGAGACAAAGAGAGAGAGT  530

seq1  GCCAGAATCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAATCCCGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTGT  580

seq1  CACTCCCTGATTGGCTGCAACCCATCGGCCCAGTTGTCATCACGAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCTGATTGGCTGCAACCCATCGGCCCAGTTGTCATCACGAGAAAG  630

seq1  GCAGAGCACATGGCGGGAAAACTGCCCCTGCACATGTGCAGATTATTTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGCACATGGCGGGAAAACTGCCCCTGCACATGTGCAGATTATTTAC  680

seq1  TACTTAGAACACAGCTGTCAGCGCCATCTTGTAATGGCAAATATAAGTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGAACACAGCTGTCAGCGCCATCTTGTAATGGCAAATATAAGTGC  730

seq1  GGCTCCCCACATGAGGGCATCTCCTACTGAGGGCTGGACCACTTCCCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCCACATGAGGGCATCTCCTACTGAGGGCTGGACCACTTCCCTGA  780

seq1  ACATTTCACTGCCTTGAGCCTTGTGCTCGTTGCCCTTTTTTCTTTGCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCACTGCCTTGAGCCTTGTGCTCGTTGCCCTTTTTTCTTTGCCCA  830

seq1  TGTGTGATCCTCCCATTCTCCATGACTCTTCAAAGCCTTCTCTCATTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATCCTCCCATTCTCCATGACTCTTCAAAGCCTTCTCTCATTAGG  880

seq1  ATCTAACCTGTGGTTGCCATGTGTGATCCTCCTATTCTCCATGACTCTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACCTGTGGTTGCCATGTGTGATCCTCCTATTCTCCATGACTCTTC  930

seq1  AAAGCCTCCTCTCATCAGGGTCTAACCTGTGGTTGCCATGTGTGATCCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCCTCTCATCAGGGTCTAACCTGTGGTTGCCATGTGTGATCCTC  980

seq1  CCATTCCCCATGACTCTTCAAAGCCTCCTCTCATCAGGGTCTAACCTGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCCATGACTCTTCAAAGCCTCCTCTCATCAGGGTCTAACCTGTG  1030

seq1  GTTGCTCCTTGTTCTTAGGCTTCTGGGGTGGCTCAGTTTAGACAATAGGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCCTTGTTCTTAGGCTTCTGGGGTGGCTCAGTTTAGACAATAGGA  1080

seq1  TCTCTCTCAAAATGGCCCCTGGCCACAGATCCTGGGAGCCATGGAGACTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCAAAATGGCCCCTGGCCACAGATCCTGGGAGCCATGGAGACTG  1130

seq1  ACAAAATAGAATTC  1164
      ||||||||||||||
seq2  ACAAAATAGAATTC  1144