BAC Information

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BAC

Clone NameB6Ng01-328M04
Chromosome3 (Build37)
Map Location 117,145,026 - 117,245,442
singlet/doubletdoublet
Overlap genenone
Upstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328M04.bB6Ng01-328M04.g
ACCGA115931GA115932
length1,1581,189
definitionB6Ng01-328M04.b B6Ng01-328M04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,244,277 - 117,245,442)(117,145,026 - 117,146,229)
sequence
gaattcaatgaggaactcagaccttgacagtgattggaggtcgccctgca
gagagttggcattcagagcatggtaaagtattcacatcagaacagtacca
acagtattgaaatatgaaatatgaaatgccaggacagatcagggtcccaa
gattgccttgaactatcttaaagggaattctaataagctccattgattct
ttggtcccagaattcatagagagtactacatattaaaatcatggagtgta
aatgaagacagaggaatgtattctagttgaattccagtctaaggactttt
tctgcagcaaagctagattttaagattggttaatgcagttgccttgccca
ggtcactgaagaaaattaggaatcagttattatattgaaaattacttata
acacagaggtcagcatatttttaaataatgtataatttaattttctactt
tattttgtgaatttttaatttattctttgagacttttatacatgtatata
ataaaatatgataatattcacccgaatttttcactccaactactcccata
tcttccctaacatgttggtcacaaatttcatcattttcttttaaaacaac
acactaagtccaagctcttgacctgaaaattttccttaccgtgtgtttaa
taatgaaattatctgactaagatgttttctctaaggaatgctatatgatt
attccataatctttaaacaacttttccattttagaaattttgatacatac
agaaaataaaacagctgcagctgtatcaaaaaataaataaaagccatcaa
tcgctagtagctttgtggatatttttcttaccattgagtaatttaaaagt
caatctcaggtactgcattttctcatacacttaaaagataagcatccttt
ttttcctgatagtctttgtactttattacatgatttttttgttagatatt
ttcttcatttacattgcaaatgctatcccaaaattcccctatttgctccc
cctccccaacccacacactctgcttctggccctggcattctcctgtactg
gggcatattaatcttctcagaccaggcctctctcccagtgatggccaact
agcatcttctgctacatatgcagctaagagaaaccgagcctcggaggtac
tgcttagt
gaattcagggcagcggctttacctgactaaggattgtgggagagaatctt
ttcaatttcaatgcaaagaaatctggctactaataatctggcatcatcta
cagtttcactgaacacagaaaacatttcatcgatgacttggaatataaaa
ttagacaggtaaaatgctcagtgctacaaacattaaaaagcaagaccacc
aggcaacggaaatatatttataagctgcagccaagcagtttgcatgcctc
caaagataacctaaatcaagcaattacattacaaggaaatttcagaggta
aaaatgctggttacctaaagaaaacaattcaacattagcattttgtatga
cataacaataataggctttacattgcatcatttatttgtgttttttaaaa
aggcaagtttgattaagggattaaccttggacaacgaaccctcaaaaaac
acctcaaatgtgctgaaatgttgagaggctcttaaattaattaaaagtag
gaactgattaaatattagcatctggatgaatcatttattgggagatccta
ttgtgagagtttaatgcatgtcttgtattggtgaatgattcccctggtga
cagatatttacttctttgcctctaacactgtctggtttggtgttgcagaa
atgtacatagtaggactttttctctactttcctttataaaaatagtgctg
ctatttactctcacagtgaggtacacctgcattttctgtctctttctttt
gaatcagaaatgcacttagccacgtggtttcttcttattctttgcccatt
cccaatatgaaaagggtatgtatgaataataatagttcctatgtgaaaat
acccatcaaaagctccttcaattacgagcttcctatttaagaaatttcca
agccgcatcagttgaacttgggaagagcttagcatattagcttctaatca
gatggcagtctgcagaagaagaaatcagagaaactaaggtgctcctgagc
ctagaacagagatagaacccagatgtgcccagggtcattgatgatttccc
agcatatccatgactcagatggtgccatggtagagaatcacctaaggcaa
gggtgctgcccagtttgaaatggatcgaggagctgctggattggatgaga
ctcctgctccaggaaccttccatgttctacttggtagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117244277_117245442
seq2: B6Ng01-328M04.b_49_1206 (reverse)

seq1  ACTAAACCAGTACCCTCTGGAGCTC-GTTTCTC-TAGCTGCATATGTAGC  48
      ||| || ||||| |||| |  |||| ||||||| ||||||||||||||||
seq2  ACT-AAGCAGTA-CCTCCGAGGCTCGGTTTCTCTTAGCTGCATATGTAGC  48

seq1  AGAAGATGGCCTAGTTGGCCATCACTGGGAGGAGAGGCCCTTGGTCTTGA  98
      ||||||||  |||||||||||||||||||| ||||||||  ||||| |||
seq2  AGAAGATG--CTAGTTGGCCATCACTGGGA-GAGAGGCC--TGGTC-TGA  92

seq1  GAAGATT-ATATGCCCCAGTACAGGAGAATGCCAGGGCCAGAAGGCAGGA  147
      ||||||| ||||||||||||||||||||||||||||||||||| ||| ||
seq2  GAAGATTAATATGCCCCAGTACAGGAGAATGCCAGGGCCAGAA-GCA-GA  140

seq1  GTGTGTGGGTTGGGGAGGGGGGAGCAAATAGGGGAATTTTGGGATAGCAT  197
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTGTGTGGGTTGGGGA-GGGGGAGCAAATAGGGGAATTTTGGGATAGCAT  189

seq1  TTGCAATGTAAATGAAGAAAATATCTAACAAAAAAATCATGTAATAAAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGTAAATGAAGAAAATATCTAACAAAAAAATCATGTAATAAAGT  239

seq1  ACAAAGACTATCAGGAAAAAAAGGATGCTTATCTTTTAAGTGTATGAGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACTATCAGGAAAAAAAGGATGCTTATCTTTTAAGTGTATGAGAA  289

seq1  AATGCAGTACCTGAGATTGACTTTTAAATTACTCAATGGTAAGAAAAATA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGTACCTGAGATTGACTTTTAAATTACTCAATGGTAAGAAAAATA  339

seq1  TCCACAAAGCTACTAGCGATTGATGGCTTTTATTTATTTTTTGATACAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAGCTACTAGCGATTGATGGCTTTTATTTATTTTTTGATACAGC  389

seq1  TGCAGCTGTTTTATTTTCTGTATGTATCAAAATTTCTAAAATGGAAAAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCTGTTTTATTTTCTGTATGTATCAAAATTTCTAAAATGGAAAAGT  439

seq1  TGTTTAAAGATTATGGAATAATCATATAGCATTCCTTAGAGAAAACATCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAGATTATGGAATAATCATATAGCATTCCTTAGAGAAAACATCT  489

seq1  TAGTCAGATAATTTCATTATTAAACACACGGTAAGGAAAATTTTCAGGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGATAATTTCATTATTAAACACACGGTAAGGAAAATTTTCAGGTC  539

seq1  AAGAGCTTGGACTTAGTGTGTTGTTTTAAAAGAAAATGATGAAATTTGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTGGACTTAGTGTGTTGTTTTAAAAGAAAATGATGAAATTTGTG  589

seq1  ACCAACATGTTAGGGAAGATATGGGAGTAGTTGGAGTGAAAAATTCGGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATGTTAGGGAAGATATGGGAGTAGTTGGAGTGAAAAATTCGGGT  639

seq1  GAATATTATCATATTTTATTATATACATGTATAAAAGTCTCAAAGAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATCATATTTTATTATATACATGTATAAAAGTCTCAAAGAATAA  689

seq1  ATTAAAAATTCACAAAATAAAGTAGAAAATTAAATTATACATTATTTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATTCACAAAATAAAGTAGAAAATTAAATTATACATTATTTAAA  739

seq1  AATATGCTGACCTCTGTGTTATAAGTAATTTTCAATATAATAACTGATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCTGACCTCTGTGTTATAAGTAATTTTCAATATAATAACTGATTC  789

seq1  CTAATTTTCTTCAGTGACCTGGGCAAGGCAACTGCATTAACCAATCTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTCTTCAGTGACCTGGGCAAGGCAACTGCATTAACCAATCTTAA  839

seq1  AATCTAGCTTTGCTGCAGAAAAAGTCCTTAGACTGGAATTCAACTAGAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGCTTTGCTGCAGAAAAAGTCCTTAGACTGGAATTCAACTAGAAT  889

seq1  ACATTCCTCTGTCTTCATTTACACTCCATGATTTTAATATGTAGTACTCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCTCTGTCTTCATTTACACTCCATGATTTTAATATGTAGTACTCT  939

seq1  CTATGAATTCTGGGACCAAAGAATCAATGGAGCTTATTAGAATTCCCTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAATTCTGGGACCAAAGAATCAATGGAGCTTATTAGAATTCCCTTT  989

seq1  AAGATAGTTCAAGGCAATCTTGGGACCCTGATCTGTCCTGGCATTTCATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGTTCAAGGCAATCTTGGGACCCTGATCTGTCCTGGCATTTCATA  1039

seq1  TTTCATATTTCAATACTGTTGGTACTGTTCTGATGTGAATACTTTACCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATTTCAATACTGTTGGTACTGTTCTGATGTGAATACTTTACCAT  1089

seq1  GCTCTGAATGCCAACTCTCTGCAGGGCGACCTCCAATCACTGTCAAGGTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGAATGCCAACTCTCTGCAGGGCGACCTCCAATCACTGTCAAGGTC  1139

seq1  TGAGTTCCTCATTGAATTC  1166
      |||||||||||||||||||
seq2  TGAGTTCCTCATTGAATTC  1158

seq1: chr3_117145026_117146229
seq2: B6Ng01-328M04.g_68_1256

seq1  GAATTCAGGGCAGCGGCTTTACCTGACTAAGGATTGTGGGAGAGAATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCAGCGGCTTTACCTGACTAAGGATTGTGGGAGAGAATCTT  50

seq1  TTCAATTTCAATGCAAAGAAATCTGGCTACTAATAATCTGGCATCATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTCAATGCAAAGAAATCTGGCTACTAATAATCTGGCATCATCTA  100

seq1  CAGTTTCACTGAACACAGAAAACATTTCATCGATGACTTGGAATATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCACTGAACACAGAAAACATTTCATCGATGACTTGGAATATAAAA  150

seq1  TTAGACAGGTAAAATGCTCAGTGCTACAAACATTAAAAAGCAAGACCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACAGGTAAAATGCTCAGTGCTACAAACATTAAAAAGCAAGACCACC  200

seq1  AGGCAACGGAAATATATTTATAAGCTGCAGCCAAGCAGTTTGCATGCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACGGAAATATATTTATAAGCTGCAGCCAAGCAGTTTGCATGCCTC  250

seq1  CAAAGATAACCTAAATCAAGCAATTACATTACAAGGAAATTTCAGAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATAACCTAAATCAAGCAATTACATTACAAGGAAATTTCAGAGGTA  300

seq1  AAAATGCTGGTTACCTAAAGAAAACAATTCAACATTAGCATTTTGTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTGGTTACCTAAAGAAAACAATTCAACATTAGCATTTTGTATGA  350

seq1  CATAACAATAATAGGCTTTACATTGCATCATTTATTTGTGTTTTTTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACAATAATAGGCTTTACATTGCATCATTTATTTGTGTTTTTTAAAA  400

seq1  AGGCAAGTTTGATTAAGGGATTAACCTTGGACAACGAACCCTCAAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTTTGATTAAGGGATTAACCTTGGACAACGAACCCTCAAAAAAC  450

seq1  ACCTCAAATGTGCTGAAATGTTGAGAGGCTCTTAAATTAATTAAAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAAATGTGCTGAAATGTTGAGAGGCTCTTAAATTAATTAAAAGTAG  500

seq1  GAACTGATTAAATATTAGCATCTGGATGAATCATTTATTGGGAGATCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATTAAATATTAGCATCTGGATGAATCATTTATTGGGAGATCCTA  550

seq1  TTGTGAGAGTTTAATGCATGTCTTGTATTGGTGAATGATTCCCCTGGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAGTTTAATGCATGTCTTGTATTGGTGAATGATTCCCCTGGTGA  600

seq1  CAGATATTTACTTCTTTGCCTCTAACACTGTCTGGTTTGGTGTTGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTTACTTCTTTGCCTCTAACACTGTCTGGTTTGGTGTTGCAGAA  650

seq1  ATGTACATAGTAGGACTTTTTCTCTACTTTCCTTTATAAAAATAGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATAGTAGGACTTTTTCTCTACTTTCCTTTATAAAAATAGTGCTG  700

seq1  CTATTTACTCTCACAGTGAGGTACACCTGCATTTTCTGTCTCTTTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTACTCTCACAGTGAGGTACACCTGCATTTTCTGTCTCTTTCTTTT  750

seq1  GAATCAGAAATGCACTTAGCCACGTGGTTTCTTCTTATTCTTTGCCCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGAAATGCACTTAGCCACGTGGTTTCTTCTTATTCTTTGCCCATT  800

seq1  CCCAATATGAAAAGGGTATGTATGAATAATAATAGTTCCTATGTGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATATGAAAAGGGTATGTATGAATAATAATAGTTCCTATGTGAAAAT  850

seq1  ACCCATCAAAAGCTCCTTCAATTACGAGCTTCCTATTTAAGAAATTTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCAAAAGCTCCTTCAATTACGAGCTTCCTATTTAAGAAATTTCCA  900

seq1  AGCCGCATCAGTTGAACTT-GGAAGAGCTTAGCATATTAGCTTCTAATCA  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  AGCCGCATCAGTTGAACTTGGGAAGAGCTTAGCATATTAGCTTCTAATC-  949

seq1  AGATGGCAGTCTGCAGAAGAAGAAATCAGAGAAACTAAGGTGCTCCTGAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAGTCTGCAGAAGAAGAAATCAGAGAAACTAAGGTGCTCCTGAG  999

seq1  CCTAGAACAGAGATAGAACCCAGATGTGCCCA-GGTCATTGATGATTTCC  1048
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTAGAACAGAGATAGAACCCAGATGTGCCCAGGGTCATTGATGATTTCC  1049

seq1  CAGCCATATCCATTGACTCAGATGGTGCCATGGTAGAGGAGTCACCCAAG  1098
      ||| |||||||| |||||||||||||||||||||||| || ||||| |||
seq2  CAG-CATATCCA-TGACTCAGATGGTGCCATGGTAGA-GAATCACCTAAG  1096

seq1  --CAGGGTGCTGCCCAGTTTGAAATGGGATTTGAGGAGGCTTGGTGGGTA  1146
         ||||||||||||||||||||||||   | ||||||   || |||  |
seq2  GCAAGGGTGCTGCCCAGTTTGAAATGG--ATCGAGGAG--CTGCTGG--A  1140

seq1  TGAGTTGAGTTTCCTTCCTGCTTCCAGGAACCTTCCCAATGTTTCCTACT  1196
      |  | ||||  |||| |     ||||||||||||||  |||||  |||||
seq2  TTGGATGAGACTCCTGC-----TCCAGGAACCTTCC--ATGTT--CTACT  1181

seq1  TTGTAGTA  1204
      | ||||||
seq2  TGGTAGTA  1189