BAC Information

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BAC

Clone NameB6Ng01-328M05
Chromosome3 (Build37)12 (Build37)
Map Location 18,012,732 - 18,013,9126,154,098 - 6,154,229
singlet/doubletsingletsinglet
Overlap geneCyp7b1
Upstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5
Downstream geneLOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328M05.bB6Ng01-328M05.g
ACCGA115933GA115934
length1,158411
definitionB6Ng01-328M05.b B6Ng01-328M05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,012,732 - 18,013,912)(6,154,098 - 6,154,229)
sequence
gaattccaagtcttcaagcttggttccacattcaatatcatcactgtatc
ttttatatcaacagactaaagcgaataatcacttgttcatatcaaaactg
tttgataatatctaatacctgtctatatattttcttatgtaaaaaaaatc
aactgcaagtggatatagttcgcaaaggacaagctccttgagatttgcct
tggcatttttccagagatttgacaccaaaagcaacaagaacaaaaagtaa
acagagcacagaaaaccaaaaagcttctacacatccaagagcaaaaacag
aatgaaagaaaacatttacaaatcatgcacctgatacagagcctatcttc
agagagcataaggaattcttacaatgtaaagtgaaacttttaacagcttg
tttaagaaatatgctggagacttgtacaggcatgtatccaaagaagacat
ataagtggccaacatgtatttaaagaaaggaactcaaagaaatgtaaaac
aaaacaaacaaatcaagcaagtgagcaaacaaacaaacaaacccaactta
ttattaaatttcactcactctcttaacagaagacaaccactgctggctgt
ggctctgaagaaattcaaatctttccatattaatgttacaaatgcaaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaggaagaggaagaggaagaggaagaggaagaggaagaggaa
gaggaagaggaagaggaagaggaagattcctcaagatgagaagacaacta
ccagatgatccaacaatcccagttgtttactgaaaacatagatcagaatc
ttgaagagatattagcacctttatgttcattggaaggctagtcacaatag
ctacagatggatacaagttaaatacacactgacagatgaataaagaaagt
gtagaatgtgcatgtgatctgatgaaagactgtttaattatagaaagaga
gcaatgcagtatgggacacaggataaagtgaagagtatactctcaacatg
cacgtctaacactttctgggtacagagctaacaagaatctcactgaagaa
tacggatcgcttgcagcactgaaaaaatgtcaacatctagtcatcagaat
gccaatca

gaattctttatttagctctgtaccccattttgtaatagggccatttgatt
ttctagagtctaacttcttgagttctttgtacattttgaatattagcact
ctatcagatttaggattcgtaaagatctttttccaatctgttggttacct
ttttaaatacccatggaagcagttacagagacaaagtgtggagcagagac
tgaaggaatgaccatcctgagactgccctacctgaggatccatctcataa
ataaccaacaaatctagacacaattgcagatgccaacaagagcttgctga
caggagcctgatatagtgtctcctgagaggttctgccagtgcctgtcaaa
tacagaagtggatgctcacagccatccattagactgaacacagggtcccc
aatgaaggagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18012732_18013912
seq2: B6Ng01-328M05.b_45_1202

seq1  GAATTCCAAGTCTTCAAGCTTGGTTCCACATTCAATATCATCACTGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCTTCAAGCTTGGTTCCACATTCAATATCATCACTGTATC  50

seq1  TTTTATATCAACAGACTAAAGCGAATAATCACTTGTTCATATCAAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATCAACAGACTAAAGCGAATAATCACTTGTTCATATCAAAACTG  100

seq1  TTTGATAATATCTAATACCTGTCTATATATTTTCTTATGTAAAAAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAATATCTAATACCTGTCTATATATTTTCTTATGTAAAAAAAATC  150

seq1  AACTGCAAGTGGATATAGTTCGCAAAGGACAAGCTCCTTGAGATTTGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCAAGTGGATATAGTTCGCAAAGGACAAGCTCCTTGAGATTTGCCT  200

seq1  TGGCATTTTTCCAGAGATTTGACACCAAAAGCAACAAGAACAAAAAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTTTCCAGAGATTTGACACCAAAAGCAACAAGAACAAAAAGTAA  250

seq1  ACAGAGCACAGAAAACCAAAAAGCTTCTACACATCCAAGAGCAAAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCACAGAAAACCAAAAAGCTTCTACACATCCAAGAGCAAAAACAG  300

seq1  AATGAAAGAAAACATTTACAAATCATGCACCTGATACAGAGCCTATCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAAAACATTTACAAATCATGCACCTGATACAGAGCCTATCTTC  350

seq1  AGAGAGCATAAGGAATTCTTACAATGTAAAGTGAAACTTTTAACAGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCATAAGGAATTCTTACAATGTAAAGTGAAACTTTTAACAGCTTG  400

seq1  TTTAAGAAATATGCTGGAGACTTGTACAGGCATGTATCCAAAGAAGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAATATGCTGGAGACTTGTACAGGCATGTATCCAAAGAAGACAT  450

seq1  ATAAGTGGCCAACATGTATTTAAAGAAAGGAACTCAAAGAAATGTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGGCCAACATGTATTTAAAGAAAGGAACTCAAAGAAATGTAAAAC  500

seq1  AAAACAAACAAATCAAGCAAGTGAGCAAACAAACAAACAAACCCAACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAATCAAGCAAGTGAGCAAACAAACAAACAAACCCAACTTA  550

seq1  TTATTAAATTTCACTCACTCTCTTAACAGAAGACAACCACTGCTGGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATTTCACTCACTCTCTTAACAGAAGACAACCACTGCTGGCTGT  600

seq1  GGCTCTGAAGAAATTCAAATCTTTCCATATTAATGTTACAAATGCAAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAAGAAATTCAAATCTTTCCATATTAATGTTACAAATGCAAAGA  650

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  700

seq1  AAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAA  750

seq1  GAGGAAGAGGAAGAGGAAGAGGAAGATTCCTCAAGATGAGAAGACAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGGAAGAGGAAGAGGAAGATTCCTCAAGATGAGAAGACAACTA  800

seq1  CCAGATGATCCAACAATCCCAGTTGTTTACTGAAAACATAGATCAGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGATCCAACAATCCCAGTTGTTTACTGAAAACATAGATCAGAATC  850

seq1  TTGAAGAGATATTAGCACCTTTATGTTCATTGGAAGGCTAGTCACAATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAGATATTAGCACCTTTATGTTCATTGGAAGGCTAGTCACAATAG  900

seq1  CTACAAGATGGATACAAGTTAAATACACACTGACAGATGAATAAAGAAAG  950
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAC-AGATGGATACAAGTTAAATACACACTGACAGATGAATAAAGAAAG  949

seq1  TGTAGAATGTGCATGTTGATCTGATGAAAGACTGTTTAATTTATAGAAAG  1000
      ||||||||||||||| ||||||||||||||||||||||| ||||||||||
seq2  TGTAGAATGTGCATG-TGATCTGATGAAAGACTGTTTAA-TTATAGAAAG  997

seq1  AGAGCAATTGCAGTATGGGACAACAGGAATAAAAGTTGAGAGTATACTCT  1050
      ||||||| ||||||||||||| ||||||   |||||  ||||||||||||
seq2  AGAGCAA-TGCAGTATGGGAC-ACAGGA--TAAAGTGAAGAGTATACTCT  1043

seq1  CAACATGCACGTTCTACACTTTCTGGGGTACAGAGCTAAACAAAGAATTC  1100
      ||||||||||||   ||||||||| ||||||||||||||   ||||| ||
seq2  CAACATGCACGTCTAACACTTTCT-GGGTACAGAGCTAA--CAAGAA-TC  1089

seq1  TCAACTGAAGAATACCGAATCGCTGAGAAGCACCTGAAAAAAAATGTTCA  1150
      || ||||||||||| || ||||||  | |||| |||  |||||||| |||
seq2  TC-ACTGAAGAATA-CGGATCGCT-TGCAGCA-CTG--AAAAAATG-TCA  1132

seq1  ACATCCTTAGTCATCAGGGAAATGCAAATCA  1181
      |||||  ||||||||||   ||||| |||||
seq2  ACATC--TAGTCATCAG---AATGCCAATCA  1158


seq1: chr12_6154098_6154229
seq2: B6Ng01-328M05.g_347_478 (reverse)

seq1  GCTCCTTCATTGGGGACCCTGTGCTCTGTCTAATGGATGACTGTGAGCAT  50
      ||||||||||||||||||||||| || |||||||||||| ||||||||||
seq2  GCTCCTTCATTGGGGACCCTGTGTTCAGTCTAATGGATGGCTGTGAGCAT  50

seq1  CCACCTCTGTATTAGTCAGGCACTGGCAGAGCTTCTCA-GAGACAGCTAT  99
      |||| |||||||| | |||||||||||||| | ||||| |||||| ||||
seq2  CCACTTCTGTATTTGACAGGCACTGGCAGAACCTCTCAGGAGACA-CTAT  99

seq1  ATCAGTCTCCTGTCAGCAAGCTCTTGCTGGCAT  132
      ||||| |||||||||||||||||||| ||||||
seq2  ATCAGGCTCCTGTCAGCAAGCTCTTGTTGGCAT  132


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