BAC Information

Click to search

BAC

Clone NameB6Ng01-328N10
Chromosome3 (Build37)
Map Location 65,496,404 - 65,611,237
singlet/doubletdoublet
Overlap genenone
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneCcnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N10.bB6Ng01-328N10.g
ACCGA115990GA115991
length1,1981,074
definitionB6Ng01-328N10.b B6Ng01-328N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,610,040 - 65,611,237)(65,496,404 - 65,497,478)
sequence
gaattcatcaacatttcaccatcatatattcagatacttgtgtctccact
ctcttccctgggttcctctcacagccccaccccaccgacactctgctttt
ttctttctgagactttaaaagaaaatcttgttttaatagaaaagtgtttc
cctctgttccctgtgttttcaggtgccctgtacttgtctcagtttacatc
ctgtttatagcttgcatgactaaacttaaacacgataaactaacttaaca
tgataaaattttcctttacttcttggacatggcaaatacatcaactgtgt
taacgttatcttctaatcttagcatctctgtcttcctgagtcatttaaaa
tatttatttttatgttatggctatagtgttgtactgcactatgtcagtgt
atcatgtaagtacagtacccatagatgctggaagaaagcgtcagatccct
tggtaccagagttacagacagttgtgagctaccatgtgggcgctgagaac
tgatcctgggtcctctgggagactgggacaactctgcagcccatctcagt
tgatttttttagtcactgatttttcttttcattgtgagttctattctcct
agttctttctgtttatggaaactatgtattagacaccaggcactgtgact
ttgaccttggtaactacttgtgctcatttctgtttgtcttccagaatctg
gatgttagtattcctatgaatatgtgtagtatctacttggggaatggcag
catgtcttagagtcaacttactttaggtcttccttttgacatttgttagg
atcagactatcactgaacccaggcctaataatgtctaataatagaatgcc
agctatggaaaagccttctgcgtatcctgtagattacaggttttctggtc
tgtctggtgaaaagagactaaagcctggttgtatgtgagtgttcagttct
ttattctctcagattggccttccctggctaaagcttgcccacatgcacgc
tctagaccatccacccacactcctcctctttagatgtctctgcacactac
tttgagagttgttgcaactttatctcatgggactccttcacttcaaagca
aatgccaaggcctaactgttcccagtctctcctgtgtgtccagcatgcca
gaactgtcatagttccatatgtcaagactgtaccagacaatctgtcac

gaattcattcctttgatgttgctcaaaacttattccagtagacacatgac
cataagaacataaacctagaagtttatatcacattctaattgtaggcata
taaatatgaacctattatatttgtattagcattatgcatctcatgaactc
tgaggaaactacatatgttttattcatatgtagttctcaggtcagctaac
actttattatttcttagtcttcatcccatatcatccacaggttgtgcttc
tgagtctaaaggcagagaatatactgtcttcctttatccctcctctgggg
ggcaggggggcacatctaatcaataagcagaaagtgacaggtatttttat
gatcagtataaataaagtttacatgggtttccccatcaccaaatctacca
agattatgcagactgatatttattcaccaatattgatagacctatgtata
catgtatttattttattactggtataactgtgaaagctctctgaggctgg
taatgatgttgctatagcaacatgcttactaaaataaacattttcccctc
tacttctgtctttttaaaggtattcttttatccctctaaattttaaaatc
aacagtattttatatttttgtattttatatttgtttttataatttttacc
ttagatttatttaaccttaattattatcacaacaaaaatataatttttgt
taggctgattcctacaagttttattaggttaaatctaatttattctgaga
acacagtagaatagaatcagtgcacggcgtgaggtcagtagtgcaggctc
tgcctttgcctaagcttaagatttgcttcttaatttttctgggccttgat
ttcttcatcttcaaaatcatcaaagaatagaccatttcatagaaatggaa
ggcagattgcttaatgcttggggaattctcacctccctttttttcctttc
tatgttccttaagttaatagcgtagtgtctgtggtagtatgatgagaaat
gtctccataggcacaggtacttgaacacttggttcccagttggtgatgtt
ggtttagggagagttttaggaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65610040_65611237
seq2: B6Ng01-328N10.b_46_1243 (reverse)

seq1  GTGACAGGATG-CTGGTGACAGTCCTGTGACTATGG-ACTATGACAG-TC  47
      |||||||  || ||||| |||||| ||  | ||||| |||||||||| ||
seq2  GTGACAGATTGTCTGGT-ACAGTCTTGACA-TATGGAACTATGACAGTTC  48

seq1  T-GCATGCTGTGACACA----GGAGACTGGGAACAGGTTAGG-CTTGGCA  91
      | |||||||| ||||||     ||||||||||||| |||||| |||||||
seq2  TGGCATGCTG-GACACACAGGAGAGACTGGGAACA-GTTAGGCCTTGGCA  96

seq1  TTTGCTTTGAAGTG-AGGAGTCCATGGAGATTAAAGTTGCAACAACTCTC  140
      |||||||||||||| ||||||||   |||| |||||||||||||||||||
seq2  TTTGCTTTGAAGTGAAGGAGTCCCATGAGA-TAAAGTTGCAACAACTCTC  145

seq1  AAAGTAGTGTTGCAGAAGAACATTCTAAAGAGGAGGAGTGTGGGTGGATG  190
      ||||||||| ||||||   ||| |||||||||||||||||||||||||||
seq2  AAAGTAGTG-TGCAGA--GACA-TCTAAAGAGGAGGAGTGTGGGTGGATG  191

seq1  GTCTAGAGCGTGCATGTGGGCAAGCTTTAGCCAGGGAAGGCCAATCTGAG  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAGCGTGCATGTGGGCAAGCTTTAGCCAGGGAAGGCCAATCTGAG  241

seq1  AGAAATAAAGAACTGAACACTCACATACAACCAGGCCTTAGTCTCTTTTC  290
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AG-AATAAAGAACTGAACACTCACATACAACCAGGCTTTAGTCTCTTTTC  290

seq1  ACCAGACAGACCAGAAAACCTGTAATCTACAGGATACGCAGAAGGCTTTT  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACAGACCAGAAAACCTGTAATCTACAGGATACGCAGAAGGCTTTT  340

seq1  CCATAGCTGGCATTCTATTATTAGACATTATTAGGCCTGGGTTCAGTGAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTGGCATTCTATTATTAGACATTATTAGGCCTGGGTTCAGTGAT  390

seq1  AGTCTGATCCTAACAAATGTCAAAAGGAAGACCTAAAGTAAGTTGACTCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATCCTAACAAATGTCAAAAGGAAGACCTAAAGTAAGTTGACTCT  440

seq1  AAGACATGCTGCCATTCCCCAAGTAGATACTACACATATTCATAGGAATA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATGCTGCCATTCCCCAAGTAGATACTACACATATTCATAGGAATA  490

seq1  CTAACATCCAGATTCTGGAAGACAAACAGAAATGAGCACAAGTAGTTACC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATCCAGATTCTGGAAGACAAACAGAAATGAGCACAAGTAGTTACC  540

seq1  AAGGTCAAAGTCACAGTGCCTGGTGTCTAATACATAGTTTCCATAAACAG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAAGTCACAGTGCCTGGTGTCTAATACATAGTTTCCATAAACAG  590

seq1  AAAGAACTAGGAGAATAGAACTCACAATGAAAAGAAAAATCAGTGACTAA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTAGGAGAATAGAACTCACAATGAAAAGAAAAATCAGTGACTAA  640

seq1  AAAAATCAACTGAGATGGGCTGCAGAGTTGTCCCAGTCTCCCAGAGGACC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAACTGAGATGGGCTGCAGAGTTGTCCCAGTCTCCCAGAGGACC  690

seq1  CAGGATCAGTTCTCAGCGCCCACATGGTAGCTCACAACTGTCTGTAACTC  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCAGTTCTCAGCGCCCACATGGTAGCTCACAACTGTCTGTAACTC  740

seq1  TGGTACCAAGGGATCTGACGCTTTCTTCCAGCATCTATGGGTACTGTACT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCAAGGGATCTGACGCTTTCTTCCAGCATCTATGGGTACTGTACT  790

seq1  TACATGATACACTGACATAGTGCAGTACAACACTATAGCCATAACATAAA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGATACACTGACATAGTGCAGTACAACACTATAGCCATAACATAAA  840

seq1  AATAAATATTTTAAATGACTCAGGAAGACAGAGATGCTAAGATTAGAAGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATATTTTAAATGACTCAGGAAGACAGAGATGCTAAGATTAGAAGA  890

seq1  TAACGTTAACACAGTTGATGTATTTGCCATGTCCAAGAAGTAAAGGAAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTAACACAGTTGATGTATTTGCCATGTCCAAGAAGTAAAGGAAAA  940

seq1  TTTTATCATGTTAAGTTAGTTTATCGTGTTTAAGTTTAGTCATGCAAGCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATGTTAAGTTAGTTTATCGTGTTTAAGTTTAGTCATGCAAGCT  990

seq1  ATAAACAGGATGTAAACTGAGACAAGTACAGGGCACCTGAAAACACAGGG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACAGGATGTAAACTGAGACAAGTACAGGGCACCTGAAAACACAGGG  1040

seq1  AACAGAGGGAAACACTTTTCTATTAAAACAAGATTTTCTTTTAAAGTCTC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGGAAACACTTTTCTATTAAAACAAGATTTTCTTTTAAAGTCTC  1090

seq1  AGAAAGAAAAAAGCAGAGTGTCGGTGGGGTGGGGCTGTGAGAGGAACCCA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAAAGCAGAGTGTCGGTGGGGTGGGGCTGTGAGAGGAACCCA  1140

seq1  GGGAAGAGAGTGGAGACACAAGTATCTGAATATATGATGGTGAAATGTTG  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGAGTGGAGACACAAGTATCTGAATATATGATGGTGAAATGTTG  1190

seq1  ATGAATTC  1198
      ||||||||
seq2  ATGAATTC  1198


seq1: chr3_65496404_65497478
seq2: B6Ng01-328N10.g_70_1143

seq1  GAATTCATTCCTTTGATGTTGCTCAAAACTTATTCCAGTAGACACATGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCTTTGATGTTGCTCAAAACTTATTCCAGTAGACACATGAC  50

seq1  CATAAGAACATAAACCTAGAAGTTTATATCACATTCTAATTGTAGGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAACATAAACCTAGAAGTTTATATCACATTCTAATTGTAGGCATA  100

seq1  TAAATATGAACCTATTATATTTGTATTAGCATTATGCATCTCATGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGAACCTATTATATTTGTATTAGCATTATGCATCTCATGAACTC  150

seq1  TGAGGAAACTACATATGTTTTATTCATATGTAGTTCTCAGGTCAGCTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAACTACATATGTTTTATTCATATGTAGTTCTCAGGTCAGCTAAC  200

seq1  ACTTTATTATTTCTTAGTCTTCATCCCATATCATCCACAGGTTGTGCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTATTTCTTAGTCTTCATCCCATATCATCCACAGGTTGTGCTTC  250

seq1  TGAGTCTAAAGGCAGAGAATATACTGTCTTCCTTTATCCCTCCTCTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTAAAGGCAGAGAATATACTGTCTTCCTTTATCCCTCCTCTGGGG  300

seq1  GGCAGGGGGGCACATCTAATCAATAAGCAGAAAGTGACAGGTATTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGGGGCACATCTAATCAATAAGCAGAAAGTGACAGGTATTTTTAT  350

seq1  GATCAGTATAAATAAAGTTTACATGGGTTTCCCCATCACCAAATCTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTATAAATAAAGTTTACATGGGTTTCCCCATCACCAAATCTACCA  400

seq1  AGATTATGCAGACTGATATTTATTCACCAATATTGATAGACCTATGTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGCAGACTGATATTTATTCACCAATATTGATAGACCTATGTATA  450

seq1  CATGTATTTATTTTATTACTGGTATAACTGTGAAAGCTCTCTGAGGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTATTTTATTACTGGTATAACTGTGAAAGCTCTCTGAGGCTGG  500

seq1  TAATGATGTTGCTATAGCAACATGCTTACTAAAATAAACATTTTCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGTTGCTATAGCAACATGCTTACTAAAATAAACATTTTCCCCTC  550

seq1  TACTTCTGTCTTTTTAAAGGTATTCTTTTATCCCTCTAAATTTTAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGTCTTTTTAAAGGTATTCTTTTATCCCTCTAAATTTTAAAATC  600

seq1  AACAGTATTTTATATTTTTGTATTTTATATTTGTTTTTATAATTTTTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTATTTTATATTTTTGTATTTTATATTTGTTTTTATAATTTTTACC  650

seq1  TTAGATTTATTTAACCTTAATTATTATCACAACAAAAATATAATTTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTATTTAACCTTAATTATTATCACAACAAAAATATAATTTTTGT  700

seq1  TAGGCTGATTCCTACAAGTTTTATTAGGTTAAATCTAATTTATTCTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGATTCCTACAAGTTTTATTAGGTTAAATCTAATTTATTCTGAGA  750

seq1  ACACAGTAGAATAGAATCAGTGCACGGCGTGAGGTCAGTAGTGCAGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAGAATAGAATCAGTGCACGGCGTGAGGTCAGTAGTGCAGGCTC  800

seq1  TGCCTTTGCCTAAGCTTAAGATTTGCTTCTTAATTTTTCTGGGCCTTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTGCCTAAGCTTAAGATTTGCTTCTTAATTTTTCTGGGCCTTGAT  850

seq1  TTCTTCATCTTCAAAATCATCAAAGAATAGACCATTTCATAGAAATGGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATCTTCAAAATCATCAAAGAATAGACCATTTCATAGAAATGGAA  900

seq1  GGCAGATTGCTTAATGCTTGGGGAATTCTCACCTCCCTTTTTTTCCTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATTGCTTAATGCTTGGGGAATTCTCACCTCCCTTTTTTTCCTTTC  950

seq1  TATGTTTCCTTAAGGTTAATAGCGTAGTGTCTGTGGTAGTATGAATGAGA  1000
      |||| |||||||| ||||||||||||||||||||||||||||| ||||||
seq2  TATG-TTCCTTAA-GTTAATAGCGTAGTGTCTGTGGTAGTATG-ATGAGA  997

seq1  AATGTCTCCCATAGGCACAGGTACTTGAACACTTGGTTCCCAGTTGGTGA  1050
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCT-CCATAGGCACAGGTACTTGAACACTTGGTTCCCAGTTGGTGA  1046

seq1  TGTT-GTTTAGG--GAGGTTTAGGAGAT  1075
      |||| |||||||  ||| ||||||| ||
seq2  TGTTGGTTTAGGGAGAGTTTTAGGAAAT  1074


| Home | SequenceCutter | Blast | Download |