BAC Information

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BAC

Clone NameB6Ng01-328N21
Chromosome3 (Build37)
Map Location 84,451,845 - 84,593,664
singlet/doubletdoublet
Overlap geneTmem154
Upstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4
Downstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N21.bB6Ng01-328N21.g
ACCGA116010GA116011
length9441,193
definitionB6Ng01-328N21.b B6Ng01-328N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,451,845 - 84,452,789)(84,592,460 - 84,593,664)
sequence
gaattccatccagaccactggttcagaaccacggctgtacattggaatca
cctcataatgccagttctccaactcccaggattcccacttgttggcaggt
tctgtggctctaaagtgaagccagcataagaatcacagattttgctgggc
gtggtggcacacgcctttaatcctagcacttggaaggcagaggcaggtgg
atttctgagtccgaggccagcctggtctacagagtgagttccaggacagc
cagagctacacagagaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaggaaccacagattttagcgttgatggagcagct
gaaaagctgggaaggactaggagcctctgttgacagcaaacctagttttt
ctgacttagtagtagccaccctggaaccttgtcctcctcattatgcctaa
taacttcaagttttaagattctcaatggttttaaatattcatttttcccc
ttcagattctcaaaggtccagttacagtagagtgtctgggagaaattatt
aaggcagatctctggccccaccctcaaatttctggttcagctgtcgcagt
gtgggttcccagatgtgtgtttctagtcactccccaggctgcaattgctg
ttgctgctccacaaaccattctttcagaactgcctgtcttagctctttcg
gtccccttgattctgaaccgtaagtatgtgccattggagcagtaaaaatt
agagcaggccacacacccaaccagacaggcagggctttctattggacctt
ctcgagacccctttgactcagccaaatggaagtaacactgaaaaaaggtg
accagtgcttgtttaaacaatgtgctttcttacacacgaacacactggcg
ctctctctctctctctctctctctctctctctctctctcatctc
gaattcagcagaggcatttcacaagagggtcttacttggctcttctcacc
ttctcttactggctgcctcatgcacactccttccttccccagatccgtga
acctgccccgtgttctcagagcagcaggcagcctgcacagcctgtggctc
agccatgttttcctcacactgtagaatgttgagatggctccactgcactc
cagaccccttctcccttagcttcaacagacagaaacactctatgggtcac
tttgggcttccctgcaggtcttgccgaccactccccagaaaccaggtgca
tctgtccctctcacccactaggtcctccctgcaggacaggacatgacatc
cttttctgcttgtattctgtcctgggaatacttttcagaactaaccaaga
ggggccaagtgaggcacttccttaaagtggagaggtgggaagccagggac
aatggtgtgtgactgtagttccagttactgagaaggccaagactactgag
agggtcactggagcccagaagttctggttgtcctaagcaatgaatatagt
ggcactcttcaccaaagatatgactaattaaaatgtttgaacattgagac
aatatattactatgtaaccctgactggccaagaacttggtatgtagacca
agctggccacaaattcacagagattcatctgtgtctgccttcccagttca
gggattaaaggcatgtgccactatatctagctaaataagtattttagagg
aaaaaaaaaagcctcactagtcaaatgttttcaagtcactgttcaaggta
gtttcagtcattgagcctggcggtatccgttcagttgctttttctctgta
acattccctgatttttcagaactgtagcttacaggatatatcatgtcctg
tacctatattgaatggctccattctctaattttaaagaacagagtatagt
ttgaataagtgtcattaaaaatttatgcaaatatataattcataaagaag
gaggccatgatctgatgagagcaggagagccacgtgagagcttgtggagg
acaggagtaagaagaagaatgctgtagcaaatttaaaatctcaaaattta
ggaagaataagagtatagaacaactgggaagccaaattcacattccagaa
tgattatttgtagcttttcataatttggcctgtggaaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84451845_84452789
seq2: B6Ng01-328N21.b_49_992

seq1  GAATTCCATCCAGACCACTGGTTCAGAACCACGGCTGTACATTGGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCAGACCACTGGTTCAGAACCACGGCTGTACATTGGAATCA  50

seq1  CCTCATAATGCCAGTTCTCCAACTCCCAGGATTCCCACTTGTTGGCAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAATGCCAGTTCTCCAACTCCCAGGATTCCCACTTGTTGGCAGGT  100

seq1  TCTGTGGCTCTAAAGTGAAGCCAGCATAAGAATCACAGATTTTGCTGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTCTAAAGTGAAGCCAGCATAAGAATCACAGATTTTGCTGGGC  150

seq1  GTGGTGGCACACGCCTTTAATCCTAGCACTTGGAAGGCAGAGGCAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCACACGCCTTTAATCCTAGCACTTGGAAGGCAGAGGCAGGTGG  200

seq1  ATTTCTGAGTCCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTCCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGC  250

seq1  CAGAGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTACACAGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAAAAAAAA  300

seq1  AAAAAAAAAAAAAAAAAGGAACCACAGATTTTAGCGTTGATGGAGCAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGGAACCACAGATTTTAGCGTTGATGGAGCAGCT  350

seq1  GAGAAGCTGGGAAGGACTAGGAGCCTCTGTTGACAGCAAACCTAGTTTTT  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGGGAAGGACTAGGAGCCTCTGTTGACAGCAAACCTAGTTTTT  400

seq1  CTGACTTAGTAGTAGCCACCCTGGAACCTTGTCCTCCTCATTATGCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAGTAGTAGCCACCCTGGAACCTTGTCCTCCTCATTATGCCTAA  450

seq1  TAACTTCAAGTTTTAAGATTCTCAATGGTTTTAAATATTCATTTTTCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCAAGTTTTAAGATTCTCAATGGTTTTAAATATTCATTTTTCCCC  500

seq1  TTCAGATTCTCAAAGGTCCAGTTACAGTAGAGTGTCTGGGAGAAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTCTCAAAGGTCCAGTTACAGTAGAGTGTCTGGGAGAAATTATT  550

seq1  AAGGCAGATCTCTGGCCCCACCCTCAGATTTCTGGTTCAGCTGTCGCAGT  600
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGCAGATCTCTGGCCCCACCCTCAAATTTCTGGTTCAGCTGTCGCAGT  600

seq1  GTGGGTTCCCAGATGTGTGTTTCTAGTCACTCCCCAGGCTGCAATTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCCCAGATGTGTGTTTCTAGTCACTCCCCAGGCTGCAATTGCTG  650

seq1  TTGCTGCTCCACAAACCATTCTTTCAGAACTGCCTGTCTTAGCTCTTTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCTCCACAAACCATTCTTTCAGAACTGCCTGTCTTAGCTCTTTCG  700

seq1  GTCCCCTTGATTCTGAACCGTAAGTATGTGCCATTGGAGCAGTAAAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTGATTCTGAACCGTAAGTATGTGCCATTGGAGCAGTAAAAATT  750

seq1  AGAGCAGGCCACACACCCAACCAGACAGGCAGGGCTTTCTATTGGGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAGCAGGCCACACACCCAACCAGACAGGCAGGGCTTTCTATT-GGACCT  799

seq1  TCTCGAGACCCCTTTGACTCAGGCCAAATGGAAGTAACACTGAAAAAAGG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTCGAGACCCCTTTGACTCA-GCCAAATGGAAGTAACACTGAAAAAAGG  848

seq1  TGACCAGTGCTTGTTTAAACAATGTGCTTTCTTACACACGAACACACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGTGCTTGTTTAAACAATGTGCTTTCTTACACACGAACACACTGG  898

seq1  CGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC-TCTC  945
      ||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCTC  944

seq1: chr3_84592460_84593664
seq2: B6Ng01-328N21.g_65_1257 (reverse)

seq1  TTTGTTTT---CAGGC--AATTATGGAAAAAGCTAC-AATAATCCTATCT  44
      ||||||||   |||||  |||||||  ||||||||| ||||||| | |||
seq2  TTTGTTTTCCACAGGCCAAATTATG--AAAAGCTACAAATAATCAT-TCT  47

seq1  TGAAATTGTTGGTATTTTGCTT-CCAGTTGTTTTTATATTTTTTAATTCT  93
       |||  |||  | |||| |||| ||||||| || |||| | ||  |||||
seq2  GGAA--TGT--GAATTTGGCTTCCCAGTTG-TTCTATACTCTT--ATTCT  90

seq1  TCTTAATTTTTGAGATTTTAATTTGGCTACAGCATTTCTC-TCTTACCTC  142
      || ||| |||||||||||||| || |||||||||||  || ||||| |||
seq2  TCCTAAATTTTGAGATTTTAAATTTGCTACAGCATTCTTCTTCTTA-CTC  139

seq1  CTGTCCTCCCACCAAGCCTTCTCACGTGCCTCTCCCTGCTCTCCTTCAGA  192
      |||||||||   |||||  ||||||||| |||| |||||||| | |||||
seq2  CTGTCCTCC--ACAAGC--TCTCACGTGGCTCT-CCTGCTCT-CATCAGA  183

seq1  TTCATGGCCTCCTTCTTTATGAATTATTATTATTTGCATTAATTTTTAAT  242
       ||||||||||||||||||||||||||   ||||||||| ||||||||||
seq2  -TCATGGCCTCCTTCTTTATGAATTAT--ATATTTGCATAAATTTTTAAT  230

seq1  GACACTTATTCAAACTATACTCTGTTCTTTAAAATTAGAGAATGGAGCCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTTATTCAAACTATACTCTGTTCTTTAAAATTAGAGAATGGAGCCA  280

seq1  TTCAATATAGGTACAGGACATGATATATCCTGTAAGCTACAGTTCTGAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATAGGTACAGGACATGATATATCCTGTAAGCTACAGTTCTGAAA  330

seq1  AATCAGGGAATGTTACAGAGAAAAAGCAACTGAACGGATACCGCCAGGCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGGAATGTTACAGAGAAAAAGCAACTGAACGGATACCGCCAGGCT  380

seq1  CAATGACTGAAACTACCTTGAACAGTGACTTGAAAACATTTGACTAGTGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGACTGAAACTACCTTGAACAGTGACTTGAAAACATTTGACTAGTGA  430

seq1  GGCTTTTTTTTTTCCTCTAAAATACTTATTTAGCTAGATATAGTGGCACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTTTTTCCTCTAAAATACTTATTTAGCTAGATATAGTGGCACA  480

seq1  TGCCTTTAATCCCTGAACTGGGAAGGCAGACACAGATGAATCTCTGTGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTAATCCCTGAACTGGGAAGGCAGACACAGATGAATCTCTGTGAA  530

seq1  TTTGTGGCCAGCTTGGTCTACATACCAAGTTCTTGGCCAGTCAGGGTTAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCCAGCTTGGTCTACATACCAAGTTCTTGGCCAGTCAGGGTTAC  580

seq1  ATAGTAATATATTGTCTCAATGTTCAAACATTTTAATTAGTCATATCTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATATATTGTCTCAATGTTCAAACATTTTAATTAGTCATATCTTT  630

seq1  GGTGAAGAGTGCCACTATATTCATTGCTTAGGACAACCAGAACTTCTGGG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGAGTGCCACTATATTCATTGCTTAGGACAACCAGAACTTCTGGG  680

seq1  CTCCAGTGACCCTCTCAGTAGTCTTGGCCTTCTCAGTAACTGGAACTACA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTGACCCTCTCAGTAGTCTTGGCCTTCTCAGTAACTGGAACTACA  730

seq1  GTCACACACCATTGTCCCTGGCTTCCCACCTCTCCACTTTAAGGAAGTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACACCATTGTCCCTGGCTTCCCACCTCTCCACTTTAAGGAAGTGC  780

seq1  CTCACTTGGCCCCTCTTGGTTAGTTCTGAAAAGTATTCCCAGGACAGAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTGGCCCCTCTTGGTTAGTTCTGAAAAGTATTCCCAGGACAGAAT  830

seq1  ACAAGCAGAAAAGGATGTCATGTCCTGTCCTGCAGGGAGGACCTAGTGGG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGAAAAGGATGTCATGTCCTGTCCTGCAGGGAGGACCTAGTGGG  880

seq1  TGAGAGGGACAGATGCACCTGGTTTCTGGGGAGTGGTCGGCAAGACCTGC  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGACAGATGCACCTGGTTTCTGGGGAGTGGTCGGCAAGACCTGC  930

seq1  AGGGAAGCCCAAAGTGACCCATAGAGTGTTTCTGTCTGTTGAAGCTAAGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCCCAAAGTGACCCATAGAGTGTTTCTGTCTGTTGAAGCTAAGG  980

seq1  GAGAAGGGGTCTGGAGTGCAGTGGAGCCATCTCAACATTCTACAGTGTGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGGGTCTGGAGTGCAGTGGAGCCATCTCAACATTCTACAGTGTGA  1030

seq1  GGAAAACATGGCTGAGCCACAGGCTGTGCAGGCTGCCTGCTGCTCTGAGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATGGCTGAGCCACAGGCTGTGCAGGCTGCCTGCTGCTCTGAGA  1080

seq1  ACACGGGGCAGGTTCACGGATCTGGGGAAGGAAGGAGTGTGCATGAGGCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGGCAGGTTCACGGATCTGGGGAAGGAAGGAGTGTGCATGAGGCA  1130

seq1  GCCAGTAAGAGAAGGTGAGAAGAGCCAAGTAAGACCCTCTTGTGAAATGC  1192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAAGAGAAGGTGAGAAGAGCCAAGTAAGACCCTCTTGTGAAATGC  1180

seq1  CTCTGCTGAATTC  1205
      |||||||||||||
seq2  CTCTGCTGAATTC  1193