BAC Information

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BAC

Clone NameB6Ng01-329D10
Chromosome3 (Build37)
Map Location 146,669,721 - 146,791,548
singlet/doubletdoublet
Overlap genenone
Upstream geneSyde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genePpia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329D10.bB6Ng01-329D10.g
ACCGA116245GA116246
length1,133782
definitionB6Ng01-329D10.b B6Ng01-329D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,790,402 - 146,791,548)(146,669,721 - 146,670,403)
sequence
gaattcaaaggtaaatacaattcccatgtggcagaggcatattagcacgt
gaaattcaataatttatgtaaaggatactaagttattcaaacaaataaag
ttacagaaatggaaagtgtcataaaattttacatctatatatccttcacg
atgccccagttgtcaagcaagatttgtacggaagtgttttccccataaat
cattttccaaacataaagttagaaatctctgtgccctgaaaaacatcagg
aagagctacagtatataattagcagagaatggagttgtgcttgtcactcc
tctaataccaacactgtcatccaagcctccaaaaacattcaatcaagtcg
ttccattgtttacaaatcagatgcaacccaagtagtgcaaggttagcctg
ttcttcatagaagctctgcttcgggcttaacgtcccagcaaactggagat
gcagagattcccacggccctctctgttgttgttaatcttcccgctccaaa
ttatgcttgctgcctctggatttcctgctacatttgctctttttcaggtg
gagctgacaattctgaggtcacactgggtcttcagtggcaagctgacagt
gggacatggctgtttgagctaagttactaataagtgaacccgtggagtgc
catttcattagcgactgtatcattaaaagcatcacctctgcgatgctctc
attgttctttgcccagtctggcccctgccttgaagccttaaaaataaaga
aaccatgccagcttcatgaagctctgggaccagctaattagtggccccct
tcctgcagtgttctcctttctagggcacaggcgagggctcctccccacat
cccacaactgtaactatgaatggacttgtttttctgagggaggaaaagaa
gataggaaataatgaaccagaccaggaagcaagattgtgtgttaaggtcc
aagggttagaattggtagccataatggtgggaatttttggttgatcttaa
agtgtgttggagtcttcagtctgaaaaaaaaacacaacaacaaaatgacc
attactactctgtctctgtaaactggggaatactcgctgtttccccgcct
cccttcctctgtgaattggcatcagatgttgta
gaattctctgtttagctctgtaccccatttttaaaaaaattggattattt
ggatttttggagtctaacttcttgagttcttcatatagtttggatattaa
cactctatcggatgcagggttagtgacgtgtctgtctctgtaccaatacc
acgtgggtttttaatcactattgaggtcagggatggtgattcttctagaa
gttcttttaatgttgagaattgttttcactatccttggatttttgttttt
ccgtatgaaattgagaactgctctttccatgtctgagaagaattgtgtaa
aagaacatacaggggctggtctgaggttcccagcacatatgaagcagagg
acagccttttctggcctcagtgggagaggatgcacctaatcctatagaga
cttgatgtcccagggaaggggaatgcttgggggtgagggagcactccctc
agaggtgaagggagggagatgggatgaaagaactctgggagggggacctg
gagggagggcaacatttgaaatataaataaataaaataattaatcaaaaa
agaacaaaaagtgctcttaattgctgagccctctctccagctccagacat
tcaaaatttaaaagttaaaaatgaagggtttttatgggtatagtaattat
acaaaatgtattttgtatgcaaatttcttttgtagactcatgtctccagg
aggttttcttttctgtttgttttaaatgatgtatattgcgaaaagaaact
ttaatatctaccagtgatttttgtccctgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146790402_146791548
seq2: B6Ng01-329D10.b_44_1176 (reverse)

seq1  TACAACATTCTGATGCCCATTTCACAGAGGAAAGGGAGGCGGGGAAACAG  50
      ||||||| ||||||| ||| |||||||||| |||||||||||||||||||
seq2  TACAACA-TCTGATG-CCAATTCACAGAGG-AAGGGAGGCGGGGAAACAG  47

seq1  CGAGTATTTCCCCAGTTTACAGAGACAGGAAGTAGTAAATGGTCATTTTG  100
      |||||| |||||||||||||||||||||  |||||| |||||||||||||
seq2  CGAGTA-TTCCCCAGTTTACAGAGACAG--AGTAGT-AATGGTCATTTTG  93

seq1  TTTGTTTGTTGT-TTTTTTTTCCAGAACTGAAGACTCCAACAACAACTTT  149
           ||||||| |||||||| ||| ||||||||||||||||   |||||
seq2  -----TTGTTGTGTTTTTTTTTCAG-ACTGAAGACTCCAACA--CACTTT  135

seq1  AAGATCAACCAAAAATTCCCACCATTATGGCTACCAATTCTAACCCTTGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAACCAAAAATTCCCACCATTATGGCTACCAATTCTAACCCTTGG  185

seq1  ACCTTAACACACAATCTTGCTTCCTGGTCTGGTTCATTATTTCCTATCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAACACACAATCTTGCTTCCTGGTCTGGTTCATTATTTCCTATCTT  235

seq1  CTTTTCCTCCCTCAGAAAAACAAGTCCATTCATAGTTACAGTTGTGGGAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCCTCCCTCAGAAAAACAAGTCCATTCATAGTTACAGTTGTGGGAT  285

seq1  GTGGGGAGGAGCCCTCGCCTGTGCCCTAGAAAGGAGAACACTGCAGGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAGGAGCCCTCGCCTGTGCCCTAGAAAGGAGAACACTGCAGGAAG  335

seq1  GGGGCCACTAATTAGCTGGTCCCAGAGCTTCATGAAGCTGGCATGGTTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCACTAATTAGCTGGTCCCAGAGCTTCATGAAGCTGGCATGGTTTC  385

seq1  TTTATTTTTAAGGCTTCAAGGCAGGGGCCAGACTGGGCAAAGAACAATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTAAGGCTTCAAGGCAGGGGCCAGACTGGGCAAAGAACAATGA  435

seq1  GAGCATCGCAGAGGTGATGCTTTTAATGATACAGTCGCTAATGAAATGGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCGCAGAGGTGATGCTTTTAATGATACAGTCGCTAATGAAATGGC  485

seq1  ACTCCACGGGTTCACTTATTAGTAACTTAGCTCAAACAGCCATGTCCCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACGGGTTCACTTATTAGTAACTTAGCTCAAACAGCCATGTCCCAC  535

seq1  TGTCAGCTTGCCACTGAAGACCCAGTGTGACCTCAGAATTGTCAGCTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTTGCCACTGAAGACCCAGTGTGACCTCAGAATTGTCAGCTCCA  585

seq1  CCTGAAAAAGAGCAAATGTAGCAGGAAATCCAGAGGCAGCAAGCATAATT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAAAGAGCAAATGTAGCAGGAAATCCAGAGGCAGCAAGCATAATT  635

seq1  TGGAGCGGGAAGATTAACAACAACAGAGAGGGCCGTGGGAATCTCTGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCGGGAAGATTAACAACAACAGAGAGGGCCGTGGGAATCTCTGCAT  685

seq1  CTCCAGTTTGCTGGGACGTTAAGCCCGAAGCAGAGCTTCTATGAAGAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGTTTGCTGGGACGTTAAGCCCGAAGCAGAGCTTCTATGAAGAACA  735

seq1  GGCTAACCTTGCACTACTTGGGTTGCATCTGATTTGTAAACAATGGAACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACCTTGCACTACTTGGGTTGCATCTGATTTGTAAACAATGGAACG  785

seq1  ACTTGATTGAATGTTTTTGGAGGCTTGGATGACAGTGTTGGTATTAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTGAATGTTTTTGGAGGCTTGGATGACAGTGTTGGTATTAGAGG  835

seq1  AGTGACAAGCACAACTCCATTCTCTGCTAATTATATACTGTAGCTCTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAAGCACAACTCCATTCTCTGCTAATTATATACTGTAGCTCTTCC  885

seq1  TGATGTTTTTCAGGGCACAGAGATTTCTAACTTTATGTTTGGAAAATGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTTTCAGGGCACAGAGATTTCTAACTTTATGTTTGGAAAATGAT  935

seq1  TTATGGGGAAAACACTTCCGTACAAATCTTGCTTGACAACTGGGGCATCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGGAAAACACTTCCGTACAAATCTTGCTTGACAACTGGGGCATCG  985

seq1  TGAAGGATATATAGATGTAAAATTTTATGACACTTTCCATTTCTGTAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATATATAGATGTAAAATTTTATGACACTTTCCATTTCTGTAACT  1035

seq1  TTATTTGTTTGAATAACTTAGTATCCTTTACATAAATTATTGAATTTCAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTTTGAATAACTTAGTATCCTTTACATAAATTATTGAATTTCAC  1085

seq1  GTGCTAATATGCCTCTGCCACATGGGAATTGTATTTACCTTTGAATTC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAATATGCCTCTGCCACATGGGAATTGTATTTACCTTTGAATTC  1133

seq1: chr3_146669721_146670403
seq2: B6Ng01-329D10.g_159_846

seq1  TATTAACACTCTATCGGATGCAGGGTTAGTGACGTGTCTGTCTCTGTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACACTCTATCGGATGCAGGGTTAGTGACGTGTCTGTCTCTGTACC  50

seq1  AATACCACGTGGGTTTTTAATCACTATTGAGGTCAGGGATGGTGATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACGTGGGTTTTTAATCACTATTGAGGTCAGGGATGGTGATTCTT  100

seq1  CTAGAAGTTCTTTTAATGTTGAGAATTGTTTTCACTATCCTTGGATTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGTTCTTTTAATGTTGAGAATTGTTTTCACTATCCTTGGATTTTT  150

seq1  GTTTTTCCGTATGAAATTGAGAACTGCTCTTTCCATGTCTGAGAAGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCCGTATGAAATTGAGAACTGCTCTTTCCATGTCTGAGAAGAATT  200

seq1  GTGTAAAAGAACATACAGGGGCTGGTCTGAGGTTCCCAGCACATATGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAAAGAACATACAGGGGCTGGTCTGAGGTTCCCAGCACATATGAAG  250

seq1  CAGAGGACAGCCTTTTCTGGCCTCAGTGGGAGAGGATGCACCTAATCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGACAGCCTTTTCTGGCCTCAGTGGGAGAGGATGCACCTAATCCTA  300

seq1  TAGAGACTTGATGTCCCAGGGAAGGGGAATGCTTGGGGGTGAGGGAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTTGATGTCCCAGGGAAGGGGAATGCTTGGGGGTGAGGGAGCAC  350

seq1  TCCCTCAGAGGTGAAGGGAGGGAGATGGGATGAAAGAACTCTGGGAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGAGGTGAAGGGAGGGAGATGGGATGAAAGAACTCTGGGAGGGG  400

seq1  GACCTGGAGGGAGGGCAACATTTGAAATATAAATAAATAAAATAATTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGAGGGAGGGCAACATTTGAAATATAAATAAATAAAATAATTAAT  450

seq1  CAAAAAAGAACAAAAAGTGCTCTTAATTGCTGAGCCCTCTCTCCAGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGAACAAAAAGTGCTCTTAATTGCTGAGCCCTCTCTCCAGCTCC  500

seq1  AGACATTCAAAATTTAAAAGTTAAAAATGAAGGGTTTTTATGGGTATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCAAAATTTAAAAGTTAAAAATGAAGGGTTTTTATGGGTATAGT  550

seq1  AATTATACAAAATGTATTTTGTATGCAAA-TTCTTTTGTAGACTCATGTC  599
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AATTATACAAAATGTATTTTGTATGCAAATTTCTTTTGTAGACTCATGTC  600

seq1  TCCAGGAGGTTTTC-TTTCTGTTTG-TTTAAATGATGTATATTGCG-AAA  646
      |||||||||||||| |||||||||| |||||||||||||||||||| |||
seq2  TCCAGGAGGTTTTCTTTTCTGTTTGTTTTAAATGATGTATATTGCGAAAA  650

seq1  GAAACTTTAATATCGA-CAGTGATTTTTGTCCCTGTGC  683
      |||||||||||||| | |||||||||||||||||||||
seq2  GAAACTTTAATATCTACCAGTGATTTTTGTCCCTGTGC  688