BAC Information

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BAC

Clone NameB6Ng01-329F03
Chromosome3 (Build37)
Map Location 118,756,283 - 118,926,036
singlet/doubletdoublet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329F03.bB6Ng01-329F03.g
ACCGA116315GA116316
length1,2161,092
definitionB6Ng01-329F03.b B6Ng01-329F03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,924,840 - 118,926,036)(118,756,283 - 118,757,371)
sequence
gaattcactactaaaacttaggaactctgctaatggaagatttaggaatg
gactgagaggccaattcaatgttgaaatggctttccaacaaataagaaaa
atatacaaagaaataaaaaccacacaaaatagcaacttgcttgatagaag
tataatgagtcgggtggaaggactttaaaagcagcatccaacttatccga
agaaacccagacaaggttcctttacattgaaggaacccgggatgttgcag
ataagagattttgtgtatgtgcagatatgtgtttgtgtgtgtgtttgtgt
gcatgaatgtgtgttcacccttgcccacaaatgcaaatgcctggatgcat
aggaaaataaggtgccttagaaaagcagaaggtgaccccctctgtcttac
tgagtatagttaaatcttgggcaggcaaggttatcaagaatagaagggag
ggggctggggagatggctcagggcttcagagcactggctgaaaggagcca
ggctatgatggtgcatgactttttccccatctctcagaaagcagttctca
gcatataagccttgggctgaagcctgccagtaatttagttccagaggaac
tcaacacttctggtctttatgggcacctgcattcatgggcatccatgtgt
gtgcataaacagacatacacactcacacacgcacttaaaataataataaa
aaacaggctttttaatagcttagtggatactactgcttgctgcacaaggc
taatgacctgaggtcagtggctggcgcaccactgtagacttagagaattg
actccacaaagttgccctctgatttcactgtgtgtgctgttctctctcac
acacatagtaaaagacaaaatttgagttttctaagagttcttagaaagcc
tttttgttagcatcattaatgatgtttttttattttaataggaaaagaaa
attgaacttagggtggcgcttgagcgggagacaggagaccgatgacaggg
attgccatggggaaaggagtttgcttggagtatatccttggtgggactgg
gaatagatccgtcatctcaagaaacagttaaaccatgttcgaagacccta
acggacggcagcaatccttggagggacagcccttctttgtttatctaaga
atgataaatggagccttgaagaataggttaagttaaacaccgaggagggg
gccctctttaaattca
gaattctgcctgttaagaagtctcatagccgcaagtatgttaggtttcac
acaaaggtgggcagtgattggctatgagggtgattaagcagagcctaaga
tcattttgactctggacctgtgacattccaaccatccatagccatgctag
tcaggatcagttgatcagccttggagacttttaaatgagagtgtagcatt
ttttttttttttttgagatttcagcttatatctctttccttttggtggtt
tatttactaccatgtgtctagactctgatttttcaaagatatttctctct
agaatctgagaatctatatctttgactagctctttgatgtggaataattt
ctactcaaatgtggattcctctaatttttttctatgtgctctagtaaaat
ccaatcaaatcttttcatttctttctttacatgtcatatcttgaaacctt
gataatggtttgtttggttttttttttccattttgttagagctattctta
ggcaatattcccaagttataaaataaatgtaactaatacctttcatttaa
atagactagacctaccctgttgtttattctaaacaattaacattcttttt
ccctcacatactaatatttatttttcatgtctagatattctttttggtaa
tgttgcacgtcttcacagttctgaatcatctgactctttggtggcatgtt
tacttctctttattgttaagcatttcaggcatattttgttgtataatttg
accaacatatactacacagaccagattttgtgtcttactgtttcctgctg
tctgtcatgcaggattctctaatgttttcttcattcctgagctcatagtc
ctccattttcatggatactttcagaaacctggaggaatgtgctttatgaa
tgaatgggagatgggattttttttttctgttataagcaaaaatgcaggtg
gtttacgtttttgactttgcaaacttcaatcattagcttcgtaaaggcag
gcaatactgagtgtggaagaaacagtcttagctttcctaatcttcttcta
gataactttaatttttaagtaccattcagccttcgccctccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118924840_118926036
seq2: B6Ng01-329F03.b_45_1260 (reverse)

seq1  TGAATTTAAAGA--GCACCCTCTCGGGTGTTTTACTGTAACTTA-TCTCT  47
      ||||||||||||  || |||||   ||||||| ||| |||| || |||  
seq2  TGAATTTAAAGAGGGCCCCCTCCTCGGTGTTTAACT-TAACCTATTCTTC  49

seq1  AAAGCT-CATTATCCCTTCTAAGAT-AACAAAGA--GGCTGT-CCTC--A  90
      || ||| ||||   | |||| |||| ||||||||  |||||| ||||  |
seq2  AAGGCTCCATTTATCATTCTTAGATAAACAAAGAAGGGCTGTCCCTCCAA  99

seq1  GGATTGCTGCCGTCTGTT-GGGTCT--CTACATGG-TTAAATGTTTCTCT  136
      |||||||||||||| ||| ||||||    |||||| |||| ||||||| |
seq2  GGATTGCTGCCGTCCGTTAGGGTCTTCGAACATGGTTTAACTGTTTCT-T  148

seq1  GAGATGACGTTTCTATT-CCAGTCCCAC--AGGATATACT-CAAGCAAAC  182
      |||||||||  |||||| ||||||||||  |||||||||| |||||||||
seq2  GAGATGACGGATCTATTCCCAGTCCCACCAAGGATATACTCCAAGCAAAC  198

seq1  TCCTTT-CCCATGGCAAT-CCTGTCATCGGTCTCCTGTCTCCCGCTCAAG  230
      |||||| ||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCTTTCCCCATGGCAATCCCTGTCATCGGTCTCCTGTCTCCCGCTCAAG  248

seq1  CGCCACCCTAAGTTCAATTTTCTTTTCCTATTAAAA-AAAAAAACATCAT  279
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CGCCACCCTAAGTTCAATTTTCTTTTCCTATTAAAATAAAAAAACATCAT  298

seq1  TAATGATGCTAACAAAAAGGCTTTCTAAGAACTCTTAGAAAACTCAAATT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATGCTAACAAAAAGGCTTTCTAAGAACTCTTAGAAAACTCAAATT  348

seq1  TTGTCTTTTACTATGTGTGTGAGAGAGAACAGCACACACAGTGAATTCAG  379
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTCTTTTACTATGTGTGTGAGAGAGAACAGCACACACAGTGAAATCAG  398

seq1  AGGGCAACTTTGTGGAGTCAATTCTCTAAGTCTACAGTGGTGCGCCAGCC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAACTTTGTGGAGTCAATTCTCTAAGTCTACAGTGGTGCGCCAGCC  448

seq1  ACTGACCTCAGGTCATTAGCCTTGTGCAGCAAGCAGTAGTATCCACTAAG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCAGGTCATTAGCCTTGTGCAGCAAGCAGTAGTATCCACTAAG  498

seq1  CTATTAAAAAGCCTGTTTTTTATTATTATTTTAAGTGCGTGTGTGAGTGT  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAAAGCCTGTTTTTTATTATTATTTTAAGTGCGTGTGTGAGTGT  548

seq1  GTATGTCTGTTTATGCACACACATGGATGCCCATGAATGCAGGTGCCCAT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTCTGTTTATGCACACACATGGATGCCCATGAATGCAGGTGCCCAT  598

seq1  AAAGACCAGAAGTGTTGAGTTCCTCTGGAACTAAATTACTGGCAGGCTTC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCAGAAGTGTTGAGTTCCTCTGGAACTAAATTACTGGCAGGCTTC  648

seq1  AGCCCAAGGCTTATATGCTGAGAACTGCTTTCTGAGAGATGGGGAAAAAG  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGGCTTATATGCTGAGAACTGCTTTCTGAGAGATGGGGAAAAAG  698

seq1  TCATGCACCATCATAGCCTGGCTCCTTTCAGCCAGTGCTCTGAAGCCCTG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCACCATCATAGCCTGGCTCCTTTCAGCCAGTGCTCTGAAGCCCTG  748

seq1  AGCCATCTCCCCAGCCCCCTCCCTTCTATTCTTGATAACCTTGCCTGCCC  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCCCCAGCCCCCTCCCTTCTATTCTTGATAACCTTGCCTGCCC  798

seq1  AAGATTTAACTATACTCAGTAAGACAGAGGGGGTCACCTTCTGCTTTTCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAACTATACTCAGTAAGACAGAGGGGGTCACCTTCTGCTTTTCT  848

seq1  AAGGCACCTTATTTTCCTATGCATCCAGGCATTTGCATTTGTGGGCAAGG  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACCTTATTTTCCTATGCATCCAGGCATTTGCATTTGTGGGCAAGG  898

seq1  GTGAACACACATTCATGCACACAAACACACACACAAACACATATCTGCAC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACACACATTCATGCACACAAACACACACACAAACACATATCTGCAC  948

seq1  ATACACAAAATCTCTTATCTGCAACATCCCGGGTTCCTTCAATGTAAAGG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAAATCTCTTATCTGCAACATCCCGGGTTCCTTCAATGTAAAGG  998

seq1  AACCTTGTCTGGGTTTCTTCGGATAAGTTGGATGCTGCTTTTAAAGTCCT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTCTGGGTTTCTTCGGATAAGTTGGATGCTGCTTTTAAAGTCCT  1048

seq1  TCCACCCGACTCATTATACTTCTATCAAGCAAGTTGCTATTTTGTGTGGT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCGACTCATTATACTTCTATCAAGCAAGTTGCTATTTTGTGTGGT  1098

seq1  TTTTATTTCTTTGTATATTTTTCTTATTTGTTGGAAAGCCATTTCAACAT  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTCTTTGTATATTTTTCTTATTTGTTGGAAAGCCATTTCAACAT  1148

seq1  TGAATTGGCCTCTCAGTCCATTCCTAAATCTTCCATTAGCAGAGTTCCTA  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGGCCTCTCAGTCCATTCCTAAATCTTCCATTAGCAGAGTTCCTA  1198

seq1  AGTTTTAGTAGTGAATTC  1197
      ||||||||||||||||||
seq2  AGTTTTAGTAGTGAATTC  1216

seq1: chr3_118756283_118757371
seq2: B6Ng01-329F03.g_63_1154

seq1  GAATTCTGCCTGTTAAGAAGTCTCATAGCCGCAAGTATGTTAGGTTTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTGTTAAGAAGTCTCATAGCCGCAAGTATGTTAGGTTTCAC  50

seq1  ACAAAGGTGGGCAGTGATTGGCTATGAGGGTGATTAAGCAGAGCCTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGTGGGCAGTGATTGGCTATGAGGGTGATTAAGCAGAGCCTAAGA  100

seq1  TCATTTTGACTCTGGACCTGTGACATTCCAACCATCCATAGCCATGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGACTCTGGACCTGTGACATTCCAACCATCCATAGCCATGCTAG  150

seq1  TCAGGATCAGTTGATCAGCCTTGGAGACTTTTAAATGAGAGTGTAGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATCAGTTGATCAGCCTTGGAGACTTTTAAATGAGAGTGTAGCATT  200

seq1  TTTTTTTTTTTTTTGAGATTTCAGCTTATATCTCTTTCCTTTTGGTGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAGATTTCAGCTTATATCTCTTTCCTTTTGGTGGTT  250

seq1  TATTTACTACCATGTGTCTAGACTCTGATTTTTCAAAGATATTTCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTACCATGTGTCTAGACTCTGATTTTTCAAAGATATTTCTCTCT  300

seq1  AGAATCTGAGAATCTATATCTTTGACTAGCTCTTTGATGTGGAATAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGAGAATCTATATCTTTGACTAGCTCTTTGATGTGGAATAATTT  350

seq1  CTACTCAAATGTGGATTCCTCTAATTTTTTTCTATGTGCTCTAGTAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAAATGTGGATTCCTCTAATTTTTTTCTATGTGCTCTAGTAAAAT  400

seq1  CCAATCAAATCTTTTCATTTCTTTCTTTACATGTCATATCTTGAAACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCAAATCTTTTCATTTCTTTCTTTACATGTCATATCTTGAAACCTT  450

seq1  GATAATGGTTTGTTTGGTTTTTTTTTTCCATTTTGTTAGAGCTATTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGGTTTGTTTGGTTTTTTTTTTCCATTTTGTTAGAGCTATTCTTA  500

seq1  GGCAATATTCCCAAGTTATAAAATAAATGTAACTAATACCTTTCATTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATTCCCAAGTTATAAAATAAATGTAACTAATACCTTTCATTTAA  550

seq1  ATAGACTAGACCTACCCTGTTGTTTATTCTAAACAATTAACATTCTTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTAGACCTACCCTGTTGTTTATTCTAAACAATTAACATTCTTTTT  600

seq1  CCCTCACATACTAATATTTATTTTTCATGTCTAGATATTCTTTTTGGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACATACTAATATTTATTTTTCATGTCTAGATATTCTTTTTGGTAA  650

seq1  TGTTGCACGTCTTCACAGTTCTGAATCATCTGACTCTTTGGTGGCATGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCACGTCTTCACAGTTCTGAATCATCTGACTCTTTGGTGGCATGTT  700

seq1  TACTTCTCTTTATTGTTAAGCATTTCAGGCATATTTTGTTGTATAATTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCTTTATTGTTAAGCATTTCAGGCATATTTTGTTGTATAATTTG  750

seq1  ACCAACATATACTACACAGACCAGATTTTGTGTCTTACTGTTTCCTGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACATATACTACACAGACCAGATTTTGTGTCTTACTGTTTCCTGCTG  800

seq1  TCTGTCATGCAGGATTCTCTAATGTTTTCTTCATTCCTGAGCTCATAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGCAGGATTCTCTAATGTTTTCTTCATTCCTGAGCTCATAGTC  850

seq1  CTCCATTTTCATGGATACTTTCAGAAACCTGGAGGAATGTGCTTTATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTTTCATGGATACTTTCAGAAACCTGGAGGAATGTGCTTTATGAA  900

seq1  TGAATGGGAGATGGGA-TTTTTTTTTCTGTTATTAGCAAAAATGCAAGGT  949
      |||||||||||||||| |||||||||||||||| ||||||||||| ||||
seq2  TGAATGGGAGATGGGATTTTTTTTTTCTGTTATAAGCAAAAATGC-AGGT  949

seq1  GGTTTACG-TTTTGACTTTGCAAAC-TCAGTCATTAGC-TCTGAAAGGCA  996
      |||||||| |||||||||||||||| ||| |||||||| ||  |||||||
seq2  GGTTTACGTTTTTGACTTTGCAAACTTCAATCATTAGCTTCGTAAAGGCA  999

seq1  GGC-ATACTGAGTGTGGA--GAACAGTCTTTAGTTTTTCTTATTCTTCTT  1043
      ||| ||||||||||||||   ||||||| ||||  |||| || |||||||
seq2  GGCAATACTGAGTGTGGAAGAAACAGTC-TTAG-CTTTCCTAATCTTCTT  1047

seq1  CTTATTAAACTTTATTTTTTATAGT-CCATTCAGTCATCCCCCTCCC  1089
      | ||   ||||||| |||||| ||| |||||||| | || |||||||
seq2  C-TAGATAACTTTAATTTTTA-AGTACCATTCAGCCTTCGCCCTCCC  1092