BAC Information

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BAC

Clone NameB6Ng01-329J22
Chromosome3 (Build37)
Map Location 60,536,011 - 60,686,270
singlet/doubletdoublet
Overlap geneLOC676933, LOC100040501, EG666853
Upstream geneLOC433597, LOC433598, LOC100040407, LOC669780, EG666803, C130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1
Downstream geneP2ry1, Rap2b, LOC666891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329J22.bB6Ng01-329J22.g
ACCGA116531GA116532
length1,002605
definitionB6Ng01-329J22.b B6Ng01-329J22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,536,011 - 60,537,000)(60,685,666 - 60,686,270)
sequence
gaattcctaaaattatatcagtatttattaaggtcttttatagtgggact
tttattaggtttgctctgataatcaaaactgtaatgagaactcttccagt
ctttagtgtcatgtgttaattgcttctaaatagcaagtaggcatttacta
cccagaggtattccaaaaagctgtaaaaccattatccaaaggtcattaaa
agggaaatagcaatttatgataggtgcaaagacagaaggtaaaatactga
ctgggtttttctatacaaaacttcactaatacgtaatcacagagttatgt
tttttaactctatgaacctgttgaccttgggacagataatgagtgtttag
ccagataagtatgcctaatggatatgcatgtaaacattctctgttgcaaa
cttcttaatctatgatttgaatttatgtgtaaacttgtgacgaaattttt
accatgtgaacatgtattctaaaagatgtataaatgctgaagacaaagag
aggagagaattctcctaatccatttttcttagcgctccttgtcttgcttt
tcttagatttccttatttccctttctcttaggccctgatccccttttcct
tagagagtttcataggaaactttttacaacttagaaataaaagctaaacc
actttctaatgtgttcctttttcttcctgtgagttcaactagcacactga
aagttagagctctgaagtgcctgcagagataaaacaagggctactttatt
taaatctgccaaactgtatcaccaccaccaccaccacgattaggctacag
gtgttaattgcctaagccaatggcttttaacatccagaaagagcaaaaaa
gtttttaggacctttcagaagctatcaacaaacatttagtatagagagct
agaacatccagagaccatcagtctttaaacatacacctgagtctgactct
gtgtctcatttcaacccactccaggctgggatgctccttgcatgtgtgtg
tg

gaattctttaaaaatacagtgcagggatatttgaacaccattaaaaataa
tcttattcattacatttggtcatacacaagttaaagtaaaaataggtcat
agattcaaagtgaaagccaaaattattttctagagaaaataccagtgatg
tgtgtgaccttaaagtaaggacaatgattaagacagaaacatgtcagcta
tatagaaaattaaattgttgaactttaccaaactaatatttttttctccc
ttcagtagaaaatttagaaaacaagaaagaacgtaatgacagggatttgc
actttctgaagcactctctctctcttgctctctcttgctctctcttgctc
ttgctcttgctctgtgtgtgtgtgtgtgtgtgtgtgtatgctcgagctca
tgtgcacatgcctgcccacacacgctcacacatatgtgtgcacatgtata
ttttttgagcagttgtactagatgccaccattgcaagctgttttccttta
atcctttgccattttagcaaatgccattgtgccagtttctcctttctttc
ttttcttttctattatttttttcagtcttgtgtgtgtgtgtgttttgtgt
gtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_60536011_60537000
seq2: B6Ng01-329J22.b_60_1049

seq1  TTATATCAGTATTTATTAAGGTCTTTTATAGTGGGACTTTTATTAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCAGTATTTATTAAGGTCTTTTATAGTGGGACTTTTATTAGGTTT  50

seq1  GCTCTGATAATCAAAACTGTAATGAGAACTCTTCCAGTCTTTAGTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATAATCAAAACTGTAATGAGAACTCTTCCAGTCTTTAGTGTCAT  100

seq1  GTGTTAATTGCTTCTAAATAGCAAGTAGGCATTTACTACCCAGAGGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAATTGCTTCTAAATAGCAAGTAGGCATTTACTACCCAGAGGTATT  150

seq1  CCAAAAAGCTGTAAAACCATTATCCAAAGGTCATTAAAAGGGAAATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGCTGTAAAACCATTATCCAAAGGTCATTAAAAGGGAAATAGCA  200

seq1  ATTTATGATAGGTGCAAAGACAGAAGGTAAAATACTGACTGGGTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGATAGGTGCAAAGACAGAAGGTAAAATACTGACTGGGTTTTTCT  250

seq1  ATACAAAACTTCACTAATACGTAATCACAGAGTTATGTTTTTTAACTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAACTTCACTAATACGTAATCACAGAGTTATGTTTTTTAACTCTA  300

seq1  TGAACCTGTTGACCTTGGGACAGATAATGAGTGTTTAGCCAGATAAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGTTGACCTTGGGACAGATAATGAGTGTTTAGCCAGATAAGTAT  350

seq1  GCCTAATGGATATGCATGTAAACATTCTCTGTTGCAAACTTCTTAATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATGGATATGCATGTAAACATTCTCTGTTGCAAACTTCTTAATCTA  400

seq1  TGATTTGAATTTATGTGTAAACTTGTGACGAAATTTTTACCATGTGAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGAATTTATGTGTAAACTTGTGACGAAATTTTTACCATGTGAACA  450

seq1  TGTATTCTAAAAGATGTATAAATGCTGAAGACAAAGAGAGGAGAGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTAAAAGATGTATAAATGCTGAAGACAAAGAGAGGAGAGAATTC  500

seq1  TCCTAATCCATTTTTCTTAGCGCTCCTTGTCTTGCTTTTCTTAGATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATCCATTTTTCTTAGCGCTCCTTGTCTTGCTTTTCTTAGATTTCC  550

seq1  TTATTTCCCTTTCTCTTAGGCCCTGATCCCCTTTTCCTTAGAGAGTTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCCTTTCTCTTAGGCCCTGATCCCCTTTTCCTTAGAGAGTTTCA  600

seq1  TAGGAAACTTTTTACAACTTAGAAATAAAAGCTAAACCACTTTCTAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACTTTTTACAACTTAGAAATAAAAGCTAAACCACTTTCTAATGT  650

seq1  GTTCCTTTTTCTTCCTGTGAGTTCAACTAGCACACTGAAAGTTAGAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTTTCTTCCTGTGAGTTCAACTAGCACACTGAAAGTTAGAGCTC  700

seq1  TGAAGTGCCTGCAGAGATAAAACAAGGGCTACTTTATTTAAATCTGCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGCCTGCAGAGATAAAACAAGGGCTACTTTATTTAAATCTGCCAA  750

seq1  ACTGTATCACCACCACCACCACCACGATTAGGCTACAGGTGTTAATTGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATCACCACCACCACCACCACGATTAGGCTACAGGTGTTAATTGCC  800

seq1  TAAGCCAATGGCTTTTAACATCCAGAAAGAGCAAAAAAGTTTTTAGGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAATGGCTTTTAACATCCAGAAAGAGCAAAAAAGTTTTTAGGACC  850

seq1  TTTCAGAAGCTATCAACAAACATTTAGTATAGAGAGCTAGAACATCCAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAGCTATCAACAAACATTTAGTATAGAGAGCTAGAACATCCAGA  900

seq1  GACCATCAGTCTTTAAACATACACCTGAGTCTGACTCTGTGTCTCATTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCAGTCTTTAAACATACACCTGAGTCTGACTCTGTGTCTCATTTC  950

seq1  AACCCACTCCAGGCTGGGATGCTCCCTGCATGTGTGTGTG  990
      ||||||||||||||||||||||||| ||||||||||||||
seq2  AACCCACTCCAGGCTGGGATGCTCCTTGCATGTGTGTGTG  990


seq1: chr3_60685666_60686270
seq2: B6Ng01-329J22.g_68_672 (reverse)

seq1  CACACACACAAAACACACACACACACAAGACTGAAAAAAATAATAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAAAACACACACACACACAAGACTGAAAAAAATAATAGAAAA  50

seq1  GAAAAGAAAGAAAGGAGAAACTGGCACAATGGCATTTGCTAAAATGGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAGAAAGGAGAAACTGGCACAATGGCATTTGCTAAAATGGCAA  100

seq1  AGGATTAAAGGAAAACAGCTTGCAATGGTGGCATCTAGTACAACTGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTAAAGGAAAACAGCTTGCAATGGTGGCATCTAGTACAACTGCTCA  150

seq1  AAAAATATACATGTGCACACATATGTGTGAGCGTGTGTGGGCAGGCATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATACATGTGCACACATATGTGTGAGCGTGTGTGGGCAGGCATGT  200

seq1  GCACATGAGCTCGAGCATACACACACACACACACACACACACAGAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAGCTCGAGCATACACACACACACACACACACACACAGAGCAAG  250

seq1  AGCAAGAGCAAGAGAGAGCAAGAGAGAGCAAGAGAGAGAGAGTGCTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGCAAGAGAGAGCAAGAGAGAGCAAGAGAGAGAGAGTGCTTCAG  300

seq1  AAAGTGCAAATCCCTGTCATTACGTTCTTTCTTGTTTTCTAAATTTTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCAAATCCCTGTCATTACGTTCTTTCTTGTTTTCTAAATTTTCTA  350

seq1  CTGAAGGGAGAAAAAAATATTAGTTTGGTAAAGTTCAACAATTTAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGAGAAAAAAATATTAGTTTGGTAAAGTTCAACAATTTAATTTT  400

seq1  CTATATAGCTGACATGTTTCTGTCTTAATCATTGTCCTTACTTTAAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAGCTGACATGTTTCTGTCTTAATCATTGTCCTTACTTTAAGGTC  450

seq1  ACACACATCACTGGTATTTTCTCTAGAAAATAATTTTGGCTTTCACTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATCACTGGTATTTTCTCTAGAAAATAATTTTGGCTTTCACTTTG  500

seq1  AATCTATGACCTATTTTTACTTTAACTTGTGTATGACCAAATGTAATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATGACCTATTTTTACTTTAACTTGTGTATGACCAAATGTAATGAA  550

seq1  TAAGATTATTTTTAATGGTGTTCAAATATCCCTGCACTGTATTTTTAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTATTTTTAATGGTGTTCAAATATCCCTGCACTGTATTTTTAAAG  600

seq1  AATTC  605
      |||||
seq2  AATTC  605


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