BAC Information

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BAC

Clone NameB6Ng01-329N05
Chromosome3 (Build37)
Map Location 118,128,137 - 118,226,573
singlet/doubletdoublet
Overlap genenone
Upstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
Downstream geneDpyd, LOC100043275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-329N05.bB6Ng01-329N05.g
ACCGA116679GA116680
length1,188384
definitionB6Ng01-329N05.b B6Ng01-329N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,225,392 - 118,226,573)(118,128,137 - 118,128,527)
sequence
gaattcacaacttattttagtgctacatccagcaagcttccacagaccat
ctgcattttgaatgcttgcatgcagtaagacataacagaatcattattcg
cagcttctgaacagaccctgactttcattcatcatgtattagtttgggga
ccctgacagatttacttattatctgactgtgccgcattttctgaatttca
aaaacagacacagttcaaaaacaggatgtaaaggcagaatttggaaaaag
cttctaaggagttatcttgagtctcaaggtggaaagcaggagcagattca
tttgcataagaaagaaaaggaggtgatgagttagggtaggcactggtgat
ctaaggggtgggcaagggtccctgagagggtttgagaatgactttgggaa
gggggtgttggaaagaaagacttatcttgcatgattctctgctgcataac
acctagtacagacatatattcctggaagatttgaagaaaattgcaaaata
tgcaggttgcaacccagtaggtagaaaaataaatgacactttagaaaaaa
agaaagaggagtaggaggaagtaaatagaagtaaaaagaatgtatagaat
cataaaatggccttataccatttataattaagtgttgtcctacccacatc
ttctgttatctttaattatcttccattcaagagaaataacacaaatttct
attttcactcttggtaaatcacatgacacagaaagcatcactttctgttt
gagtttggttgttactggaaattaatactttaaaaataaacacagggcct
cccagaaaaaaagaaatgatccacaggtgacagtttgcaacccaagagaa
aaattagcatgataaacttatcatacatactgcttgctttgattattagt
gaccttaataagtgagatatttttttaaaacacctccacaaagaaaggag
gtaattcatatttagttaaagggccacagcatgagctgcaaaagtccttc
ctgagctgtttataatttgaaaatatcgatgatttattatataccattgt
aatggatcaaatggttcatcaagaacagtgaaccagttaaataattcatg
acttcgtgaaacatcagactattatttggaaccttgcttccattacggta
aagaatacgaaaaccgtggcacttttcctggctgaaga

cctagaaaaacagaataatcccccatttctgagtgagaggttccaggcac
aggactcggtatgtgagcatgcaactttccttgaggaagactacagtaca
ggtagcagaagagaaaaggagagggagtcctccttcctcttccctcctct
tcaggcttacaggacgtttattgcctgctatctacattctgaactattaa
tagatagttcctccaaccattgatgaaaagcttccagaaacgtgtcacca
gagctcttccgaacgtataaatgtgggtttccttgagtggtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtatatgtgtgtgtgtgtgtcctgatgctcgca
aaacgtgttttcaactacagctgtgatttttttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118225392_118226573
seq2: B6Ng01-329N05.b_46_1233 (reverse)

seq1  TCTTCAG-CAG--AAAGTGCCACCGTTTTTCAATATTCTTTTTACACGTA  47
      ||||||| |||  |||||||||| |||||    |||||  ||||| ||||
seq2  TCTTCAGCCAGGAAAAGTGCCACGGTTTT--CGTATTC--TTTAC-CGTA  45

seq1  ATGGAAGCAAG--TTCAAATAATAGGTCTGATG-TTCACGAAGTCATTAA  94
      |||||||||||  | ||||||||| |||||||| ||||||||||||| ||
seq2  ATGGAAGCAAGGTTCCAAATAATA-GTCTGATGTTTCACGAAGTCATGAA  94

seq1  ATATTT-ACTGG-TCACTG-TCTTGATGACCATTTTGATTCATTAC-ATG  140
       ||||| ||||| |||||| ||||||||| |  |||||| |||||| |||
seq2  TTATTTAACTGGTTCACTGTTCTTGATGAACCATTTGATCCATTACAATG  144

seq1  GTATAT-ATAAATCATCGATATTTTCAAATTATAAACAGCTCAGGAAGGA  189
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAATAAATCATCGATATTTTCAAATTATAAACAGCTCAGGAAGGA  194

seq1  CTTTTGCAGCTCATGCTGTGG-CCTTTAACTAAAATATGAATTACCTCC-  237
      ||||||||||||||||||||| ||||||||| ||||||||||||||||| 
seq2  CTTTTGCAGCTCATGCTGTGGCCCTTTAACT-AAATATGAATTACCTCCT  243

seq1  TTCTTTGTGGAGGTGTTTTAAAAAAATATCTCACTTATTAAGGTCACTAA  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGGAGGTGTTTTAAAAAAATATCTCACTTATTAAGGTCACTAA  293

seq1  TAATCAAAGCAAGCAGTATGTATGATAAGTTTATCATGCTAATTTTTCTC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAAGCAAGCAGTATGTATGATAAGTTTATCATGCTAATTTTTCTC  343

seq1  TTGGGTTGCAAACTGTCACCTGTGGATCATTTCTTTTTTTCTGGGAGGCC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTGCAAACTGTCACCTGTGGATCATTTCTTTTTTTCTGGGAGGCC  393

seq1  CTGTGTTTATTTTTAAAGTATTAATTTCCAGTAACAACCAAACTCAAACA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTATTTTTAAAGTATTAATTTCCAGTAACAACCAAACTCAAACA  443

seq1  GAAAGTGATGCTTTCTGTGTCATGTGATTTACCAAGAGTGAAAATAGAAA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGATGCTTTCTGTGTCATGTGATTTACCAAGAGTGAAAATAGAAA  493

seq1  TTTGTGTTATTTCTCTTGAATGGAAGATAATTAAAGATAACAGAAGATGT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTATTTCTCTTGAATGGAAGATAATTAAAGATAACAGAAGATGT  543

seq1  GGGTAGGACAACACTTAATTATAAATGGTATAAGGCCATTTTATGATTCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGGACAACACTTAATTATAAATGGTATAAGGCCATTTTATGATTCT  593

seq1  ATACATTCTTTTTACTTCTATTTACTTCCTCCTACTCCTCTTTCTTTTTT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTCTTTTTACTTCTATTTACTTCCTCCTACTCCTCTTTCTTTTTT  643

seq1  TCTAAAGTGTCATTTATTTTTCTACCTACTGGGTTGCAACCTGCATATTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTGTCATTTATTTTTCTACCTACTGGGTTGCAACCTGCATATTT  693

seq1  TGCAATTTTCTTCAAATCTTCCAGGAATATATGTCTGTACTAGGTGTTAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTTCTTCAAATCTTCCAGGAATATATGTCTGTACTAGGTGTTAT  743

seq1  GCAGCAGAGAATCATGCAAGATAAGTCTTTCTTTCCAACACCCCCTTCCC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAGAATCATGCAAGATAAGTCTTTCTTTCCAACACCCCCTTCCC  793

seq1  AAAGTCATTCTCAAACCCTCTCAGGGACCCTTGCCCACCCCTTAGATCAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATTCTCAAACCCTCTCAGGGACCCTTGCCCACCCCTTAGATCAC  843

seq1  CAGTGCCTACCCTAACTCATCACCTCCTTTTCTTTCTTATGCAAATGAAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTACCCTAACTCATCACCTCCTTTTCTTTCTTATGCAAATGAAT  893

seq1  CTGCTCCTGCTTTCCACCTTGAGACTCAAGATAACTCCTTAGAAGCTTTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCTGCTTTCCACCTTGAGACTCAAGATAACTCCTTAGAAGCTTTT  943

seq1  TCCAAATTCTGCCTTTACATCCTGTTTTTGAACTGTGTCTGTTTTTGAAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTCTGCCTTTACATCCTGTTTTTGAACTGTGTCTGTTTTTGAAA  993

seq1  TTCAGAAAATGCGGCACAGTCAGATAATAAGTAAATCTGTCAGGGTCCCC  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAAATGCGGCACAGTCAGATAATAAGTAAATCTGTCAGGGTCCCC  1043

seq1  AAACTAATACATGATGAATGAAAGTCAGGGTCTGTTCAGAAGCTGCGAAT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAATACATGATGAATGAAAGTCAGGGTCTGTTCAGAAGCTGCGAAT  1093

seq1  AATGATTCTGTTATGTCTTACTGCATGCAAGCATTCAAAATGCAGATGGT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCTGTTATGTCTTACTGCATGCAAGCATTCAAAATGCAGATGGT  1143

seq1  CTGTGGAAGCTTGCTGGATGTAGCACTAAAATAAGTTGTGAATTC  1182
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAGCTTGCTGGATGTAGCACTAAAATAAGTTGTGAATTC  1188


seq1: chr3_118128137_118128527
seq2: B6Ng01-329N05.g_65_454

seq1  GAATTCCCTAGAAAAACAGAATAATCCCCCATTTCTGAGTGAGAGGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGAAAAACAGAATAATCCCCCATTTCTGAGTGAGAGGTTCC  50

seq1  AGGCACAGGACTCGGTATGTGAGCATGCAACTTTCCTTGAGGAAGACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGACTCGGTATGTGAGCATGCAACTTTCCTTGAGGAAGACTAC  100

seq1  AGTACAGGTAGCAGAAGAGAAAAGGAGAGGGAGTCCTCCTTCCTCTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAGGTAGCAGAAGAGAAAAGGAGAGGGAGTCCTCCTTCCTCTTCCC  150

seq1  TCCTCTTCAGGCTTACAGGACGTTTATTGCCTGCTATCTACATTCTGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCAGGCTTACAGGACGTTTATTGCCTGCTATCTACATTCTGAAC  200

seq1  TATTAATAGATAGTTCCTCCAACCATTGATGAAAAGCTTCCAGAAACGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATAGATAGTTCCTCCAACCATTGATGAAAAGCTTCCAGAAACGTG  250

seq1  TCACCAGAGCTCTTCCGAACGTATAAATGTGGGTTTCCTTGAGTGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAGAGCTCTTCCGAACGTATAAATGTGGGTTTCCTTGAGTGGTGTG  300

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTTGAT  350
      ||||||||||||||||||||||||| | |||||||||||||| || ||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTATATGTGTGTGTGTGTG-TCCTGAT  349

seq1  GCTCGCAAAACGTGTTTTCAACAACAGCTGTGACTTTTTTC  391
      |||||||||||||||||||||| |||||||||| |||||||
seq2  GCTCGCAAAACGTGTTTTCAACTACAGCTGTGATTTTTTTC  390


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