BAC Information

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BAC

Clone NameB6Ng01-330A09
Chromosome3 (Build37)
Map Location 147,817,151 - 147,964,773
singlet/doubletdoublet
Overlap genenone
Upstream genePpia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368, LOC668893
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330A09.bB6Ng01-330A09.g
ACCGA116820GA116821
length8351,176
definitionB6Ng01-330A09.b B6Ng01-330A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,963,939 - 147,964,773)(147,817,151 - 147,818,123)
sequence
gaattcattttacagttatgtattatctatttacatatgagcatataact
tgcatgatgtataggaagatggctttctaataaaccacagcactaaggag
atttggcttaatggtaaattcaatgctaatgtaatcattaacttttaaat
tttcttctcttggaagtactttgaaacatgaattagctcactaatgcaaa
ccatggaaattcactgtaaggtttatattaccttgcctgttttaatatgg
aaatatatggctcaccgctattgtatgctttcctctattatggaggtaac
tctatacagtaacagtgattcagggtcaccatctttcttaggagttgaaa
ctgttttacactgtctcatttattctctttccttgtggtgcagtacagcg
tgaatccagcagcattctggattcccctcacagtctacttaaagaagtta
ggtagaaaggggtgagttaaggcttctcaaattgaaatactcaataggtt
tgcagcgggtgatgaagatcgggctctacgtttccaaatctttaataact
aagtgaactacagcaatgtgagagtcactaatggattttataaactgaga
aagactaatatgaaaagatccattttatatcacgtatgactgtacataag
aaagaaaaaaaaaactaccagaggaaaagcaaataaaaacatttcacttc
aaagagttattataaaatgtttatcactgagtaaaaataaacagttttca
cagatttgaaactaaaccatttggaagaaaatttattctgttcctaaaag
atggcatagtgagtgtctactgtatgggtgtgtgt

gaattctttgttttctttggagactcagttgtgtcatgcatatttttttc
tggaacctgtcttatgaaaggatgttttgctgaagcagacaaatgagagg
aagttctgctgagaacaggtacatgctgttttctggaagctaccttagga
aagagcatctgatgctttgttgcaatggatgcttgagagtgcccaagatg
tttaggaagaatatagatataaccccacagacagtgagaggacactcttg
cattggttcaccttgtaatgctttgctggtttttgctgatatttgcttgt
tttgattttttagagaaaaaggtgccaaaaaaatttcctcatggtatcct
ggcggtttctcctggggactcgcggttgctacggatttgcatttggcgtt
tgcaattggactgggttggtgcagctggttcctgtttggaatcaccccca
aaaaactacttctaaacaggtgcctatccccatttcctattgaacctttt
tcttccctacctttgtgcagtgggctagaagggaggtcgaacccttatta
aagtagattttgaaaaatataatcctacaaaaaatagctaaaaatgtgga
tttttaaaaatattttcaaccttaaaaaatgataaatgcttgaactgatt
tgggacaataaccttgctatgattgtaacatttgtgtatggaaagtttat
actgtactccataaatttatataattattatatgccaaggaatagcttag
gttagaaacagaaaataataaaaattagatgagatttaaaaagccattga
tcagatttaagtggattaaggaactccacataaaaccagagacactgaaa
cttatagaggagaaagtgggggaaagcctcgaagatatgggtacagggga
aaaattcctgaatagaacagcaatggcttgtgctataagattgagaatca
acaaatgggacctcataaaattgcacggttctgcaaggcaaagacaccgt
caataagacaaaaaggcacagagattgggaatgatcttacctatctaaat
cagataggactatatcatatatatataagaactccagaggtggactcgaa
atcaataatcccatttaaaatgggctcgagctacagatgtcacctgagat
ccgatgcgaagacctgaaggttcaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147963939_147964773
seq2: B6Ng01-330A09.b_48_882 (reverse)

seq1  ACACACACCCATACAGTAGACACTCACTATGCCATCTTTTAGGAACAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCCATACAGTAGACACTCACTATGCCATCTTTTAGGAACAGAA  50

seq1  TAAATTTTCTTCCAAATGGTTTAGTTTCAAATCTGTGAAAACTGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTCTTCCAAATGGTTTAGTTTCAAATCTGTGAAAACTGTTTATT  100

seq1  TTTACTCAGTGATAAACATTTTATAATAACTCTTTGAAGTGAAATGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCAGTGATAAACATTTTATAATAACTCTTTGAAGTGAAATGTTTT  150

seq1  TATTTGCTTTTCCTCTGGTAGTTTTTTTTTTCTTTCTTATGTACAGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTTTTCCTCTGGTAGTTTTTTTTTTCTTTCTTATGTACAGTCAT  200

seq1  ACGTGATATAAAATGGATCTTTTCATATTAGTCTTTCTCAGTTTATAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATATAAAATGGATCTTTTCATATTAGTCTTTCTCAGTTTATAAAA  250

seq1  TCCATTAGTGACTCTCACATTGCTGTAGTTCACTTAGTTATTAAAGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTAGTGACTCTCACATTGCTGTAGTTCACTTAGTTATTAAAGATTT  300

seq1  GGAAACGTAGAGCCCGATCTTCATCACCCGCTGCAAACCTATTGAGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGTAGAGCCCGATCTTCATCACCCGCTGCAAACCTATTGAGTATT  350

seq1  TCAATTTGAGAAGCCTTAACTCACCCCTTTCTACCTAACTTCTTTAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTGAGAAGCCTTAACTCACCCCTTTCTACCTAACTTCTTTAAGTA  400

seq1  GACTGTGAGGGGAATCCAGAATGCTGCTGGATTCACGCTGTACTGCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGAGGGGAATCCAGAATGCTGCTGGATTCACGCTGTACTGCACCA  450

seq1  CAAGGAAAGAGAATAAATGAGACAGTGTAAAACAGTTTCAACTCCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGAGAATAAATGAGACAGTGTAAAACAGTTTCAACTCCTAAGA  500

seq1  AAGATGGTGACCCTGAATCACTGTTACTGTATAGAGTTACCTCCATAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTGACCCTGAATCACTGTTACTGTATAGAGTTACCTCCATAATA  550

seq1  GAGGAAAGCATACAATAGCGGTGAGCCATATATTTCCATATTAAAACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGCATACAATAGCGGTGAGCCATATATTTCCATATTAAAACAGG  600

seq1  CAAGGTAATATAAACCTTACAGTGAATTTCCATGGTTTGCATTAGTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAATATAAACCTTACAGTGAATTTCCATGGTTTGCATTAGTGAGC  650

seq1  TAATTCATGTTTCAAAGTACTTCCAAGAGAAGAAAATTTAAAAGTTAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATGTTTCAAAGTACTTCCAAGAGAAGAAAATTTAAAAGTTAATG  700

seq1  ATTACATTAGCATTGAATTTACCATTAAGCCAAATCTCCTTAGTGCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTAGCATTGAATTTACCATTAAGCCAAATCTCCTTAGTGCTGTG  750

seq1  GTTTATTAGAAAGCCATCTTCCTATACATCATGCAAGTTATATGCTCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTAGAAAGCCATCTTCCTATACATCATGCAAGTTATATGCTCATA  800

seq1  TGTAAATAGATAATACATAACTGTAAAATGAATTC  835
      |||||||||||||||||||||||||||||||||||
seq2  TGTAAATAGATAATACATAACTGTAAAATGAATTC  835


seq1: chr3_147817151_147818123
seq2: B6Ng01-330A09.g_313_1246

seq1  CACTCTTGCATTGGTTCACCTTGTAATGCTTTGCTGGTTTTTGCTGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGCATTGGTTCACCTTGTAATGCTTTGCTGGTTTTTGCTGATAT  50

seq1  TTGCTTGTTTTGATTTTTTAGAGAAAAAGGTGCCAAAAAAATTTCCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTTTTGATTTTTTAGAGAAAAAGGTGCCAAAAAAATTTCCTCAT  100

seq1  GGTATCCTGGCGGTTTCTCCTGGGGACTCGCGGTTGCTACGGATTTGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTGGCGGTTTCTCCTGGGGACTCGCGGTTGCTACGGATTTGCAT  150

seq1  TTGGCGTTTGCAATTGGACTGGGTTGGTGCAGCTGGTTCCTGTTTGGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTTTGCAATTGGACTGGGTTGGTGCAGCTGGTTCCTGTTTGGAAT  200

seq1  CACCCCCAAAAAACTACTTCTAAACAGGTGCCTATCCCCATTTCCTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCAAAAAACTACTTCTAAACAGGTGCCTATCCCCATTTCCTATTG  250

seq1  AACCTTTTTCTTCCCTACCTTTGTGCAGTGGGCTAGAAGGGAGGTCGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTTTCTTCCCTACCTTTGTGCAGTGGGCTAGAAGGGAGGTCGAAC  300

seq1  CCTTATTAAAGTAGATTTTGAAAAATATAATCCTACAAAAAATAGCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTAAAGTAGATTTTGAAAAATATAATCCTACAAAAAATAGCTAAA  350

seq1  AATGTGGATTTTTAAAAATATTTTCAACCTTAAAAAATGATAAATGCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGGATTTTTAAAAATATTTTCAACCTTAAAAAATGATAAATGCTTG  400

seq1  AACTGATTTGGGACAATAACCTTGCTATGATTGTAACATTTGTGTATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTGGGACAATAACCTTGCTATGATTGTAACATTTGTGTATGGA  450

seq1  AAGTTTATACTGTACTCCATAAATTTATATAATTATTATATGCCAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATACTGTACTCCATAAATTTATATAATTATTATATGCCAAGGAA  500

seq1  TAGCTTAGGTTAGAAACAGAAAATAATAAAAATTAGATGAGATTTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAGGTTAGAAACAGAAAATAATAAAAATTAGATGAGATTTAAAAA  550

seq1  GCCATTGATCAGATTTAAGTGGATTAAGGAACTCCACATAAAACCAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGATCAGATTTAAGTGGATTAAGGAACTCCACATAAAACCAGAGA  600

seq1  CACTGAAACTTATAGAGGAGAAAGTGGGGGAAAGCCTCGAAGATATGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAACTTATAGAGGAGAAAGTGGGGGAAAGCCTCGAAGATATGGGT  650

seq1  ACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTATAAGATT  700

seq1  GAGAATCAACAAATGGGACCTCATAAAATTGCAACGGTTCTGCAAGGCAA  750
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GAGAATCAACAAATGGGACCTCATAAAATTGC-ACGGTTCTGCAAGGC-A  748

seq1  AAGACACCGTCAATAAGACAAAAAGGCCACCAAGAGATTGGGAAAGGATC  800
      |||||||||||||||||||||||||| |||  |||||||||| || ||||
seq2  AAGACACCGTCAATAAGACAAAAAGG-CAC--AGAGATTGGG-AATGATC  794

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGA  850
       |||||||| ||||||||||||  ||||| |||||  |||||||| ||||
seq2  -TTACCTAT-CTAAATCAGATA--GGACT-ATATCATATATATAT-AAGA  838

seq1  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAATCCCATTAAAAAATGGG  900
      |||| || |||||||||     ||||| |||||||||||| ||||   ||
seq2  ACTCCAG-AGGTGGACT---CGAAATC-AATAATCCCATTTAAAA--TGG  881

seq1  GCTCAGAGCTAAACAAAGAATTGTCACCTGAGGAATACCGAATGGCAGAG  950
      |||| |||||| | |      |||||||||||  || ||||      | |
seq2  GCTC-GAGCTACAGA------TGTCACCTGAG--AT-CCGA-----TGCG  916

seq1  AAGCACCTGAAAAAATGTTCAAC  973
      ||| |||||    || |||||||
seq2  AAG-ACCTG----AAGGTTCAAC  934


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