BAC Information

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BAC

Clone NameB6Ng01-330D03
Chromosome3 (Build37)
Map Location 145,054,283 - 145,055,450
singlet/doubletsinglet
Overlap geneCol24a1
Upstream geneLOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330D03.bB6Ng01-330D03.g
ACCGA116942GA116943
length9491,171
definitionB6Ng01-330D03.b B6Ng01-330D03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaaattcttaggcaaatggatttaactagaaaatatcatcct
gagtgaggtaacccaatcacaaaagaacacacatagtgtatagtcactga
taggtggatattagcttaaaagtttggaatacccaaaatacaattcacag
accacatgaagctcaagagaaaggaagaccaaagtgtgggtgctttggtc
cttcttagaaggggtaacaaaatactcacgagagcaaatgcagagacaaa
gtttggagcagaaactgaaagaaaggccatccagagactgccccacctgg
ggatctatcccacatacagtcaccaaagcagacactattatggatgccaa
gaagtgcatgctgacaggaacctaacatagctttctccagagaggtggat
gctcacagccaaccattgaattgatcacagcgtccccaatggaggtgtta
gagaaaggactgaaggagctgaaggggcttgcaaccacataggaagaaca
acaatatcaaccaaccagagctcctagggtctagaccaccaaccaaggag
tacacatggagagacccatggctccagcagtataggtagcagaggatggc
cttgtcgggcatcaatgggagaagaggcacttggccctgtgaaggcttga
tgccccagtgtaggagaatgcaagggtggggaggtgggggcacaccctca
tagaagcagaaagagggggatgggggtctctggggtggaaatcgggaaag
gggataacagttaaaatgtaaataaataaaatatccaataaataatagca
aagcaaagatatagagaaagagagtaaaacaaagaggagggggcaaacag
ccccttttttagtgagtcaagcatacctgtctgttgccagtaactgtggg
gcggagcctagaagaatgctaccatgatgatgattgtatattactatta
cggaattccccccccccctttggcatcatcaccgtggggttgaaggaatg
ccagactggaggcagggcgagtaactggaggtctcatacacaaatcccgg
ataaaaaaaaagaagagggcctaagctacaacattggcagtgaaaccggt
ttcaaaaacagaaagagggggaaattttgagtcaagagaaacggtaagag
gttataattgatggcacaaggctgctcaggactccgaacagggtttgatg
tgaagcacatgtgggccatgtactacagaggcaaacttcacagccgtgga
aaggaagtgaaacccgaccgcccagaggggcggcggtgggtggcaggtga
gcttgccaggtaaaacaccggatgcacagttacatttgaatttcagatca
gccgtgggtgacatttagtttcaatactttccgaatacctatggttccac
tccctcacaagttcccctttcctgagagtcacagagcccacttgtctgcc
tcgcagctgcttctcaatcatcctgtgggtccaagtgttacctttctgac
aaccatgcaccccttcactgtgcgtaataatcattattatcataagaagg
gtttccatgcttgcttacactgtacatttctttggggcgtgtggatgtgg
caagtggttgggatggctggaaagtgagtccaggtgcttttctgtggccg
ttgagatctgaattctaatcctcttgctgtaaagtacataggcactttac
ctcttgtgccatttccccagcccccagcctgtaaagttcttgaaaacata
gattaggccgttccatctaggatctagtacagtggctcccacttgagagt
cacccaataaatatttgttaaatgaataaatgttctacatcaaatcttta
ttatttctccaggcctatctccactagtacatcctgtgctccagcccaga
gtggtgagtctgctatttgaagcctcagactcttgctaatcctcagatag
agctggagcccacaccccacagctgagctgcagttctggaggagccctgc
cccggttcttcccaacccctggcttgggcaagggaaaccacatttcagtg
ctgcacggcacatcccttactatttcttaccaattgcatttattattaat
attataataattatgactgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_145054283_145055450
seq2: B6Ng01-330D03.g_67_1235 (reverse)

seq1  CACAGTCAATAATAATAATAATAATAATAATAAATGCAATT-GTAAGAAA  49
      ||||||| ||||| || |||||| ||||||||||||||||| ||||||||
seq2  CACAGTC-ATAATTATTATAATATTAATAATAAATGCAATTGGTAAGAAA  49

seq1  TAGTAAGGGATGTGCCGTGCAGGCACTG-AATGTG--TTTCCTTGCCCAA  96
      ||||||||||||||||||||| |||||| ||||||  || ||||||||||
seq2  TAGTAAGGGATGTGCCGTGCA-GCACTGAAATGTGGTTTCCCTTGCCCAA  98

seq1  GCCCAGGGGTTGGGAAGACCCGGGGCAGGGCTCCT-CAG-ACTGCAGCTC  144
      | |||||||||||||||| |||||||||||||||| ||| ||||||||||
seq2  G-CCAGGGGTTGGGAAGAACCGGGGCAGGGCTCCTCCAGAACTGCAGCTC  147

seq1  AGCTGT-GGGTGTGGGCCTCCAGCTCTATCTGAGGATTAGCAAGAGTTCC  193
      |||||| ||||||||| ||||||||||||||||||||||||||||||  |
seq2  AGCTGTGGGGTGTGGG-CTCCAGCTCTATCTGAGGATTAGCAAGAGT--C  194

seq1  TGAGGCTTCAAATAGCAGACTCACCACTCTGGGCTGGAGCACAGGATGTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTCAAATAGCAGACTCACCACTCTGGGCTGGAGCACAGGATGTA  244

seq1  CTAGTGGAGATAGGCCTGGAGAAATAATAAAGATTTGATGTAGAACATTT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGAGATAGGCCTGGAGAAATAATAAAGATTTGATGTAGAACATTT  294

seq1  ATTCATTTAACAAATATTTATTGGGTGACTCTCAAGTGGGAGCCACTGTA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTAACAAATATTTATTGGGTGACTCTCAAGTGGGAGCCACTGTA  344

seq1  CTAGATCCTAGATGGAACGGCCTAATCTATGTTTTCAAGAACTTTACAGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCTAGATGGAACGGCCTAATCTATGTTTTCAAGAACTTTACAGG  394

seq1  CTGGGGGCTGGGGAAATGGCACAAGAGGTAAAGTGCCTATGTACTTTACA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGCTGGGGAAATGGCACAAGAGGTAAAGTGCCTATGTACTTTACA  444

seq1  GCAAGAGGATTAGAATTCAGATCTCAACGGCCACAGAAAAGCACCTGGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGGATTAGAATTCAGATCTCAACGGCCACAGAAAAGCACCTGGAC  494

seq1  TCACTTTCCAGCCATCCCAACCACTTGCCACATCCACACGCCCCAAAGAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCCAGCCATCCCAACCACTTGCCACATCCACACGCCCCAAAGAA  544

seq1  ATGTACAGTGTAAGCAAGCATGGAAACCCTTCTTATGATAATAATGATTA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGTGTAAGCAAGCATGGAAACCCTTCTTATGATAATAATGATTA  594

seq1  TTACGCACAGTGAAGGGGTGCATGGTTGTCAGAAAGGTAACACTTGGACC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGCACAGTGAAGGGGTGCATGGTTGTCAGAAAGGTAACACTTGGACC  644

seq1  CACAGGATGATTGAGAAGCAGCTGCGAGGCAGACAAGTGGGCTCTGTGAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATGATTGAGAAGCAGCTGCGAGGCAGACAAGTGGGCTCTGTGAC  694

seq1  TCTCAGGAAAGGGGAACTTGTGAGGGAGTGGAACCATAGGTATTCGGAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGAAAGGGGAACTTGTGAGGGAGTGGAACCATAGGTATTCGGAAA  744

seq1  GTATTGAAACTAAATGTCACCCACGGCTGATCTGAAATTCAAATGTAACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAAACTAAATGTCACCCACGGCTGATCTGAAATTCAAATGTAACT  794

seq1  GTGCATCCGGTGTTTTACCTGGCAAGCTCACCTGCCACCCACCGCCGCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATCCGGTGTTTTACCTGGCAAGCTCACCTGCCACCCACCGCCGCCC  844

seq1  CTCTGGGCGGTCGGGTTTCACTTCCTTTCCACGGCTGTGAAGTTTGCCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGGCGGTCGGGTTTCACTTCCTTTCCACGGCTGTGAAGTTTGCCTC  894

seq1  TGTAGTACATGGCCCACATGTGCTTCACATCAAACCCTGTTCGGAGTCCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACATGGCCCACATGTGCTTCACATCAAACCCTGTTCGGAGTCCT  944

seq1  GAGCAGCCTTGTGCCATCAATTATAACCTCTTACCGTTTCTCTTGACTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGCCTTGTGCCATCAATTATAACCTCTTACCGTTTCTCTTGACTCA  994

seq1  AAATTTCCCCCTCTTTCTGTTTTTGAAACCGGTTTCACTGCCAATGTTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCCCCTCTTTCTGTTTTTGAAACCGGTTTCACTGCCAATGTTGT  1044

seq1  AGCTTAGGCCCTCTTCTTTTTTTTTATCCGGGATTTGTGTATGAGACCTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGGCCCTCTTCTTTTTTTTTATCCGGGATTTGTGTATGAGACCTC  1094

seq1  CAGTTACTCGCCCTGCCTCCAGTCTGGCATTCCTTCAACCCCACGGTGAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTCGCCCTGCCTCCAGTCTGGCATTCCTTCAACCCCACGGTGAT  1144

seq1  GATGCCAAAGGGGGGGGGGGAATTC  1168
      |||||||||||||||||||||||||
seq2  GATGCCAAAGGGGGGGGGGGAATTC  1169