BAC Information

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BAC

Clone NameB6Ng01-330J11
Chromosome3 (Build37)
Map Location 99,774,032 - 99,775,106
singlet/doubletsinglet
Overlap geneSpag17
Upstream geneLOC668557, Wars2, Tbx15, M6pr-ps
Downstream geneLOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330J11.bB6Ng01-330J11.g
ACCGA117209GA117210
length1,0711,133
definitionB6Ng01-330J11.b B6Ng01-330J11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagccagttagtgaggcaagttattcctttcctagaaccaccca
ggagccctccacacagggtccctgcccttcctctgtttgacttcttaaaa
tagtttctgaagaatttaaccacaactgaatcaaaactaaccagccagta
atttcctggtctgtccctatggcctttcctttaaaataaaacacacgcac
aaaatggcatttctctggccgatttccagcttctcggggtttgactggaa
gaagctcggggatgtctgtgggagtggttcttcttactctctcttcattt
ctccttgggagaaggctgccgcttgtatggggcctcattattccatgtta
gcaaaattaggctgttttatttgtcttttttttttttaatgaagaaggtg
ctagatattgtctgcccatagttctttatgtctgccttttctccattctt
gtgtatgtgtatacttggtacacaatctacagacaaaaagaaccagccct
tcatataaaagtgtttgctatgaaagtctgagaaaatgtgagcagattta
attcatgaaaggcacaattaaaacatatttggatattttggggaaagcct
tttcaaatattctgatttcagttctgaattataggaagactccatttaca
tcggttagtaatattaaaggtcaatgattttttgtaatgtagccatagcc
atttcccaactcttttaaacaccacttttcttttagtttcttaatcacac
tgagataattcacaagcaagtacttataattaatacataatacaaaagtt
tataagaagcaagagtgactgaaaagaaaaaatcacacaatagccaaatc
aaaatgttccagataaaaaccaagagacgtattttaaaaccagaatgaat
gtgatgggaatccctgcacccaggacactgtgtccaaggatatttgtaat
gtggatgtttgccaggctgatgaattactgcagatgttaatgcacgacta
aagctgcagagtgatcctgagttaactggtggaggggagatgcgtttctg
agcagatttcccatccaaatt
gaattcttctcatcagcacatgaaactttctgtggggtagaccatgaatt
aatgaggcatatgagttccagaaaattcaaagcaatcaaaatcatattgt
gtatcttttctgactacataaaataaaacaagaaatgaaagggaaaactt
cagaagacttattaagtcttaacaacatgctagtatgcaaattgtagatc
atagaataaatcaaacgagaaattaaatgattattgaaacaaatgaaaag
tgagaacaacataatgaaaccttcaggatacagcaaaatcaacactgaag
ggaaatttatagcaatagatgctcatatcaaaaatataggaagatttcta
atatgcaatataacaacacatttttagacagtttgatctagccagtgcta
tcctgaacttgctatgcagacaagaatggcactcctgattctcctgcctt
tctctctaaatttctgggattacagatatgcactgccatgcagggcttat
attttaaagagctagaaaggaaagatcaaatcaaaaccaaaataagtaat
tttttaaacaacaaaaaatagaaataagcgaattataaactataaaaaac
acaaaagatcaatgacatggaaaactggttgcatagaagttaaaataaaa
actatacccgaactaaataaaaaagaaaaggtacatatgaaattagagct
cagggaggcattataacagatgccaccaaaatacaaaaggtttaataatt
atagttgattaaactgtgagagacatagaagaaattaatacttttataaa
tatttacaaccaaacaaaattgaactatgaagacataggaaaactctaac
aaactaataattaatagtaaagttgaatcaacaatatttcagaagtctta
caacagagaaattcaacactccaataatatatcccttactttggtctgct
gtccattctctacctggggctgtaatggataacttagtctcctctttcca
gaaactgtgtcacaacagcttgtatttaatttgttcaagtttctcaagca
aatatgggatttatcaaatgcctttctgaatcttattgaaattaggataa
tgactttgttctctcctttgtggatgtttatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99774032_99775106
seq2: B6Ng01-330J11.b_46_1116 (reverse)

seq1  AATTTGAATGGGAATGTCTGCTCAGAAACGCATCTCCCCTCCACC-GTTA  49
      |||||| |||||||  ||||||||||||||||||||||||||||| ||||
seq2  AATTTGGATGGGAA-ATCTGCTCAGAAACGCATCTCCCCTCCACCAGTTA  49

seq1  ACTCAAGGATCACTCTGCAGCTTTAGTCCTGCATTAACATCTGCAGTTAA  99
      |||| ||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ACTC-AGGATCACTCTGCAGCTTTAGTCGTGCATTAACATCTGCAG-TAA  97

seq1  TTCATCAGCCTGGCAAACATCCACAATAACAAATATCCTTGGACACAGTG  149
      |||||||||||||||||||||||| || ||||||||||||||||||||||
seq2  TTCATCAGCCTGGCAAACATCCAC-ATTACAAATATCCTTGGACACAGTG  146

seq1  TCCTGGGTGCAGGGATTCCCATCACATTCATTCTGGTTTTAAAATACGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGTGCAGGGATTCCCATCACATTCATTCTGGTTTTAAAATACGTC  196

seq1  TCTTGGTTTTTATTCTGGAACATTTTGATTTGGCTATTGTGTGATTTTTT  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTTTA-TCTGGAACATTTTGATTTGGCTATTGTGTGATTTTTT  245

seq1  CTTTTCAGTCACTCTTGCTTCTTATAAACTTTTGTATTATGTATTAATTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGTCACTCTTGCTTCTTATAAACTTTTGTATTATGTATTAATTA  295

seq1  TAAGTACTTGCTTGTGAATTATCTCAGTGTGATTAAGAAACTAAAAGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACTTGCTTGTGAATTATCTCAGTGTGATTAAGAAACTAAAAGAAA  345

seq1  AGTGGTGTTTAAAAGAGTTGGGAAATGGCTATGGCTACATTACAAAAAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGTTTAAAAGAGTTGGGAAATGGCTATGGCTACATTACAAAAAAT  395

seq1  CATTGACCTTTAATATTACTAACCGATGTAAATGGAGTCTTCCTATAATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGACCTTTAATATTACTAACCGATGTAAATGGAGTCTTCCTATAATT  445

seq1  CAGAACTGAAATCAGAATATTTGAAAAGGCTTTCCCCAAAATATCCAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGAAATCAGAATATTTGAAAAGGCTTTCCCCAAAATATCCAAAT  495

seq1  ATGTTTTAATTGTGCCTTTCATGAATTAAATCTGCTCACATTTTCTCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTAATTGTGCCTTTCATGAATTAAATCTGCTCACATTTTCTCAGA  545

seq1  CTTTCATAGCAAACACTTTTATATGAAGGGCTGGTTCTTTTTGTCTGTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATAGCAAACACTTTTATATGAAGGGCTGGTTCTTTTTGTCTGTAG  595

seq1  ATTGTGTACCAAGTATACACATACACAAGAATGGAGAAAAGGCAGACATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGTACCAAGTATACACATACACAAGAATGGAGAAAAGGCAGACATA  645

seq1  AAGAACTATGGGCAGACAATATCTAGCACCTTCTTCATTAAAAAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTATGGGCAGACAATATCTAGCACCTTCTTCATTAAAAAAAAAAA  695

seq1  AGACAAATAAAACAGCCTAATTTTGCTAACATGGAATAATGAGGCCCCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATAAAACAGCCTAATTTTGCTAACATGGAATAATGAGGCCCCAT  745

seq1  ACAAGCGGCAGCCTTCTCCCAAGGAGAAATGAAGAGAGAGTAAGAAGAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCGGCAGCCTTCTCCCAAGGAGAAATGAAGAGAGAGTAAGAAGAAC  795

seq1  CACTCCCACAGACATCCCCGAGCTTCTTCCAGTCAAACCCCGAGAAGCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACAGACATCCCCGAGCTTCTTCCAGTCAAACCCCGAGAAGCTG  845

seq1  GAAATCGGCCAGAGAAATGCCATTTTGTGCGTGTGTTTTATTTTAAAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCGGCCAGAGAAATGCCATTTTGTGCGTGTGTTTTATTTTAAAGGA  895

seq1  AAGGCCATAGGGACAGACCAGGAAATTACTGGCTGGTTAGTTTTGATTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATAGGGACAGACCAGGAAATTACTGGCTGGTTAGTTTTGATTCA  945

seq1  GTTGTGGTTAAATTCTTCAGAAACTATTTTAAGAAGTCAAACAGAGGAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGTTAAATTCTTCAGAAACTATTTTAAGAAGTCAAACAGAGGAAG  995

seq1  GGCAGGGACCCTGTGTGGAGGGCTCCTGGGTGGTTCTAGGAAAGGAATAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGACCCTGTGTGGAGGGCTCCTGGGTGGTTCTAGGAAAGGAATAA  1045

seq1  CTTGCCTCACTAACTGGCTGGAATTC  1075
      ||||||||||||||||||||||||||
seq2  CTTGCCTCACTAACTGGCTGGAATTC  1071