BAC Information

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BAC

Clone NameB6Ng01-330K16
Chromosome3 (Build37)
Map Location 133,256,807 - 133,391,733
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433653, LOC668857, Scye1, A630047E20Rik, LOC668858, Npnt, Gstcd, Ints12, 9130221D24Rik, Ppa2, E130014J05Rik
Downstream geneEG620205, LOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330K16.bB6Ng01-330K16.g
ACCGA117263GA117264
length703976
definitionB6Ng01-330K16.b B6Ng01-330K16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,256,807 - 133,257,507)(133,391,196 - 133,391,733)
sequence
gaattcagggctctccccgcagaaatggaaagggtcagggtgtgtcgagc
ctggactgagagcatcttaatctgctggagcgaccaagtgtcatgctctc
tcagtggcaagtgaaccagtctcggtggtttattccccgttatgcaatgc
acgagagtgtgtcacagcatgtcagatcattgcttctttaatcatcccta
aaagagtagctggggagctggctcagtgagtgaagtgactgtaatgtaag
tgcgaggaccaggatttgggttccctaacagactcatagaaacccgtcta
ccccgcctcttgagtgctgagatttaaggctcgtgccactatgcccaaca
tttgaatgccgttattgaagggaattctagagggcagttgtcagcatatt
tacagctataatatgtgccactttatcaaggggtgtgatcggttctgtaa
acatatatacctgatgcagacgtacagttaagtctcacacttggcaactt
tatggcaaccgagcattatgtaactttaggtatatgatgaggcccacagg
gcctgcctcttctgagagagagagagagagagagagagagagagagagag
agagagagagagtttgtgtgtgtgatattgcttcagattaactgcttgtc
ttagttcaaatacctttttgttttaaaaaatgaaatctataacatgaaaa
cca

gaattccttagtagttctttccctaaaagtaatttcttatctgatatctc
tacaactcaactcccttacctaaggtgctgggatcacagtaggagaggga
gttgggaaaatgtaagagccagaaaaacaggaagttggctgtgagatggg
ctcctggaaatgtcagagaagctgccccatgaagtctgctttagacagga
cctgaacaagcacaacatcattagacatgctaacatggaagggagaatgc
ctatgcggccccagccctagacaaagaactacaggcactaagagatgctg
agagcagaagaaattgtcttttccagagaagagcctccccagctggttat
gcagtcctaagtggtcatgcctgaagttatatagatataagtagcattat
aagggctgagcaagctgcatttatgtatttataagtataattatatgttt
tatgtaattatttccttatttatataattatataatataactataaaaac
aattaaagaaacagacacagtgaatttgagagacagcaaggcagaatgca
tggttcaggggagttttagaaaggaagagggaaaatgctgtaattataat
ctactctcaaaaactaaaaagtattaaataaatatgcttatacacaaaag
atacatggtataaaatttttaattaaaaataaatataaatacataaaaat
aaagagcattgtaggaatgtcatttcctctcaaatggttacacactggga
cattgtttcatgtatgtgttaagcatggtattgttttttaaatcccattg
atccaaaagccaactttttcctgggttaaatccctgaacacagttgggtc
tgagaatcagttccccttagtcggcatcatctggctcttattcagcatta
taataacagacctttcacatctgttagagcaatcttccctcataatattt
ttggtttctttagctttctttcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133256807_133257507
seq2: B6Ng01-330K16.b_43_745

seq1  GAATTCAGGGCTCTCCCCGCAGAAATGGAAAGGGTCAGGGTGTGTCGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGCTCTCCCCGCAGAAATGGAAAGGGTCAGGGTGTGTCGAGC  50

seq1  CTGGACTGAGAGCATCTTAATCTGCTGGAGCGACCAAGTGTCATGCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGAGAGCATCTTAATCTGCTGGAGCGACCAAGTGTCATGCTCTC  100

seq1  TCAGTGGCAAGTGAACCAGTCTCGGTGGTTTATTCCCCGTTATGCAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGCAAGTGAACCAGTCTCGGTGGTTTATTCCCCGTTATGCAATGC  150

seq1  ACGAGAGTGTGTCACAGCATGTCAGATCATTGCTTCTTTAATCATCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAGTGTGTCACAGCATGTCAGATCATTGCTTCTTTAATCATCCCTA  200

seq1  AAAGAGTAGCTGGGGAGCTGGCTCAGTGAGTGAAGTGACTGTAATGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAGCTGGGGAGCTGGCTCAGTGAGTGAAGTGACTGTAATGTAAG  250

seq1  TGCGAGGACCAGGATTTGGGTTCCCTAACAGACTCATAGAAACCCGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGAGGACCAGGATTTGGGTTCCCTAACAGACTCATAGAAACCCGTCTA  300

seq1  CCCCGCCTCTTGAGTGCTGAGATTTAAGGCTCGTGCCACTATGCCCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCCTCTTGAGTGCTGAGATTTAAGGCTCGTGCCACTATGCCCAACA  350

seq1  TTTGAATGCCGTTATTGAAGGGAATTCTAGAGGGCAGTTGTCAGCATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGCCGTTATTGAAGGGAATTCTAGAGGGCAGTTGTCAGCATATT  400

seq1  TACAGCTATAATATGTGCCACTTTATCAAGGGGTGTGATCGGTTCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTATAATATGTGCCACTTTATCAAGGGGTGTGATCGGTTCTGTAA  450

seq1  ACATATATACCTGATGCAGACGTACAGTTAAGTCTCACACTTGGCAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATACCTGATGCAGACGTACAGTTAAGTCTCACACTTGGCAACTT  500

seq1  TATGGCAACCGAGCATTATGTAACTTTAGGTATATGATGAGGCCCACAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCAACCGAGCATTATGTAACTTTAGGTATATGATGAGGCCCACAGG  550

seq1  GCCTGCCTCTTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTTCTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  600

seq1  AGAGAGAGAGAGTTTGTGTGTGTGATATTGCTTCAGATTAACTGCTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGTTTGTGTGTGTGATATTGCTTCAGATTAACTGCTTGTC  650

seq1  TTAGTTCAAATACC-TTTTGTTTT-AAAAATGAAATCTATAACATGAAAA  698
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TTAGTTCAAATACCTTTTTGTTTTAAAAAATGAAATCTATAACATGAAAA  700

seq1  CCA  701
      |||
seq2  CCA  703


seq1: chr3_133391196_133391733
seq2: B6Ng01-330K16.g_66_603 (reverse)

seq1  TGCTGTCTCTCAAATTCACTGTGTCTGTTTCTTTAATTGTTTTTATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTCTCAAATTCACTGTGTCTGTTTCTTTAATTGTTTTTATAGTT  50

seq1  ATATTATATAATTATATAAATAAGGAAATAATTACATAAAACATATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATATAATTATATAAATAAGGAAATAATTACATAAAACATATAATT  100

seq1  ATACTTATAAATACATAAATGCAGCTTGCTCAGCCCTTATAATGCTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTATAAATACATAAATGCAGCTTGCTCAGCCCTTATAATGCTACTT  150

seq1  ATATCTATATAACTTCAGGCATGACCACTTAGGACTGCATAACCAGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATATAACTTCAGGCATGACCACTTAGGACTGCATAACCAGCTGG  200

seq1  GGAGGCTCTTCTCTGGAAAAGACAATTTCTTCTGCTCTCAGCATCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCTTCTCTGGAAAAGACAATTTCTTCTGCTCTCAGCATCTCTTA  250

seq1  GTGCCTGTAGTTCTTTGTCTAGGGCTGGGGCCGCATAGGCATTCTCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGTAGTTCTTTGTCTAGGGCTGGGGCCGCATAGGCATTCTCCCTT  300

seq1  CCATGTTAGCATGTCTAATGATGTTGTGCTTGTTCAGGTCCTGTCTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTAGCATGTCTAATGATGTTGTGCTTGTTCAGGTCCTGTCTAAAG  350

seq1  CAGACTTCATGGGGCAGCTTCTCTGACATTTCCAGGAGCCCATCTCACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCATGGGGCAGCTTCTCTGACATTTCCAGGAGCCCATCTCACAG  400

seq1  CCAACTTCCTGTTTTTCTGGCTCTTACATTTTCCCAACTCCCTCTCCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCCTGTTTTTCTGGCTCTTACATTTTCCCAACTCCCTCTCCTAC  450

seq1  TGTGATCCCAGCACCTTAGGTAAGGGAGTTGAGTTGTAGAGATATCAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATCCCAGCACCTTAGGTAAGGGAGTTGAGTTGTAGAGATATCAGAT  500

seq1  AAGAAATTACTTTTAGGGAAAGAACTACTAAGGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTACTTTTAGGGAAAGAACTACTAAGGAATTC  538


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