BAC Information

Click to search

BAC

Clone NameB6Ng01-331A21
Chromosome3 (Build37)
Map Location 17,591,871 - 17,693,084
singlet/doubletdoublet
Overlap geneENSMUSG00000074674, LOC100040120
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331A21.bB6Ng01-331A21.g
ACCGA117529GA117530
length1,0611,083
definitionB6Ng01-331A21.b B6Ng01-331A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,591,871 - 17,592,932)(17,691,994 - 17,693,084)
sequence
gaattccagaatagaaaaacataacacctgaagaaaagtattagtaaatt
ggtggattagatcctgtaggaaaaaaaaaaaaaaaaactgagtttgagaa
caaatataagaatctttgccagtcttttcatttgtgaatttaactcaatg
aaagaaggtgtgccttgtaaaacaaagccctggtttcagaacctggcact
aaaaagataaaattttcgctaaagagagttgttgaaagcaaaaagaaaat
aattaccatgatatattaaaggcaaaatatattttaaaagcacaagaagc
caatgtggtggcacaaacctttaatctttttccccattttttattagata
ttttctttatttacatttcaaatgctatctggaaagtcccctataccctc
cccctccccccgccctacccacctactcccacttcttggccctggcattc
ccctgtactgtatcacataaagtttgcaagaccaaggggcctctcttcaa
accgtagatcttaacacacatgaggcaaccagaggtgtgtccaagagttt
ggggcaagcttgatcttctccaggctacaaaggaaaaccctatctcaggc
aaacaaacataaacaaataccaaataacaacaaaaagtcagtgaaatgag
tatgggaaagtacgtacgtatagccattaaattcttgtatttctatacac
agtattttgctgttggtgaatgaaattaagataatggatgaagccaaata
tagcgataaaataaaatagtataagtttgcactaattaaaaaacataaaa
taaagggaagaatgtcataacgaagaattgataaaacacaaatttcaaag
agcaataaagagacttgtatttgattacaatgaaacatttatttgtaatg
aaacatccaactgaaatgtaaaagcagatctaataagatgaggatgcagc
ctctctgggaattgcacaggtcagtctctcagggaaacagtaagttcact
gcagaccttcacctctgcttcagtcccctctcagtacagtcccggttctt
attctcactcc
gaattcattgccttacaaatctcaacgtcacttgaattttatttcaaatt
taaatgtaaattgtttttttttaatttttctaacctgtgtgttgttaatg
atttatacgatcttccaggcctttacaggtcacaaagaagactggttaca
aaataagtcagaagtcacagggttgaaagtgaaaatttaagggagcagtt
atataatccacaagagaaataattgtgatgaatttcacttctgaaaaggt
taaggtaatgaaactcatgcaaaaagcaatatagttatttgacacagagc
cacagtgaaccaaacctgtgccctaacctggatcaatatgtatgtgaaag
tctgttgttttcctgggggttagggtgagtgtccgtctaaccagtcactg
cacagttagttatgcactatagtgtctgtccagaaataaatgggggtatg
ggagtcatatctctattcatattatccctgtctatcaaagtggcatttaa
tttttccaattctatgcatttagaaacctagtcactgataaaaatctatt
taatttgctctagtgtcattcagctaatcccagacaaaatataaaatttc
tctttctttattcagctgtatgtcctataacaaacatcccataccaaaat
gaatgtatttaaaactgtaatttactagtgacataaggtagaaatgacct
ttagtttgatttttaaaaagtcacatccatgagaaaggacagatgttgaa
gatatgaattatcatttccttaaaacgtggtagaatgcatacagtatccc
ttaaattcaaattttagttttaaattcaagatttattccaaattgttata
aaataaaattttcgtttgcctccaacagatgctatgaaggtaaaatttca
cacacaattttgctggagtcggtttgcttaataactagttcgctgtccat
ggtttgatccatatgaagggaacagctccagtgctttggaaaatttaagt
catgtgttttctcataatttgacttcttacttttagattatattagagga
gagaatagtatgtgagctcatttcttcttcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17591871_17592932
seq2: B6Ng01-331A21.b_46_1106

seq1  GAATTCCAGAATAGAAAAACATAACACCTGAAGAAAAGTATTAGTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATAGAAAAACATAACACCTGAAGAAAAGTATTAGTAAATT  50

seq1  GGTGGATTAGATCCTGTAGGAAAAAAAAAAAAAAAAACTGAGTTTGAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTAGATCCTGTAGGAAAAAAAAAAAAAAAAACTGAGTTTGAGAA  100

seq1  CAAATATAAGAATCTTTGCCAGTCTTTTCATTTGTGAATTTAACTCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAAGAATCTTTGCCAGTCTTTTCATTTGTGAATTTAACTCAATG  150

seq1  AAAGAAGGTGTGCCTTGTAAAACAAAGCCCTGGTTTCAGAACCTGGCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGGTGTGCCTTGTAAAACAAAGCCCTGGTTTCAGAACCTGGCACT  200

seq1  AAAAAGATAAAATTTTCGCTAAAGAGAGTTGTTGAAAGCAAAAAGAAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGATAAAATTTTCGCTAAAGAGAGTTGTTGAAAGCAAAAAGAAAAT  250

seq1  AATTACCATGATATATTAAAGGCAAAATATATTTTAAAAGCACAAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCATGATATATTAAAGGCAAAATATATTTTAAAAGCACAAGAAGC  300

seq1  CAATGTGGTGGCACAAACCTTTAATCTTTTTCCCCATTTTTTATTAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGTGGCACAAACCTTTAATCTTTTTCCCCATTTTTTATTAGATA  350

seq1  TTTTCTTTATTTACATTTCAAATGCTATCTGGAAAGTCCCCTATACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATTTACATTTCAAATGCTATCTGGAAAGTCCCCTATACCCTC  400

seq1  CCCCTCCCCCCGCCCTACCCACCTACTCCCACTTCTTGGCCCTGGCATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCCGCCCTACCCACCTACTCCCACTTCTTGGCCCTGGCATTC  450

seq1  CCCTGTACTGTATCACATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTACTGTATCACATAAAGTTTGCAAGACCAAGGGGCCTCTCTTCAA  500

seq1  ACCTTAAATCTTAACACACATGAGGCAACCAGAGGTGTTTCCAAGAGTTT  550
      ||| || ||||||||||||||||||||||||||||||| |||||||||||
seq2  ACCGTAGATCTTAACACACATGAGGCAACCAGAGGTGTGTCCAAGAGTTT  550

seq1  GGGGCAAGCTTGATCTTCTCCAGGCTACAAAGGAAAACCCTATCTCAGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAAGCTTGATCTTCTCCAGGCTACAAAGGAAAACCCTATCTCAGGC  600

seq1  AAACAAACAAAAACAAAAACCAAATAACAACAAAAAGTCAGTGAAATCAG  650
      ||||||||| ||||||| ||||||||||||||||||||||||||||| ||
seq2  AAACAAACATAAACAAATACCAAATAACAACAAAAAGTCAGTGAAATGAG  650

seq1  TATGGGAAAGTACGTACGTATAGCCATTAAATTCTTGTATTTCTATACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAAGTACGTACGTATAGCCATTAAATTCTTGTATTTCTATACAC  700

seq1  AGTATTTTGCTGTTGGTGAATGAAATTAAGATAAAGGATGAAGCCAAATA  750
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGTATTTTGCTGTTGGTGAATGAAATTAAGATAATGGATGAAGCCAAATA  750

seq1  TAGCGATAAAATAAAATAGTATAAGTTTCCACTAATTAAAAAACATAAAA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAGCGATAAAATAAAATAGTATAAGTTTGCACTAATTAAAAAACATAAAA  800

seq1  GAAA-GGAAGAATGTAATAACGAAGAATTGATAAAACAACAAATTCAAAG  849
       ||| |||||||||| ||||||||||||||||||||||  || |||||||
seq2  TAAAGGGAAGAATGTCATAACGAAGAATTGATAAAACACAAATTTCAAAG  850

seq1  AGCAATACAAGAGACTTGTATTTGATAACAATGAAACATTAATTATTAAT  899
      ||||||| |||||||||||||||||| ||||||||||||| |||  ||||
seq2  AGCAATA-AAGAGACTTGTATTTGATTACAATGAAACATTTATTTGTAAT  899

seq1  GAAACATCCAACTGAAATGTAAAAGCAGATCTAATAAGAATGAGGATGCA  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GAAACATCCAACTGAAATGTAAAAGCAGATCTAATAAG-ATGAGGATGCA  948

seq1  GCCTCTCTGGGAA-TGCACAGGTCAGTCTCTCCAGGGAAGCAGTAGGCTC  998
      ||||||||||||| ||||||||||||||||| ||||||| ||||| | ||
seq2  GCCTCTCTGGGAATTGCACAGGTCAGTCTCT-CAGGGAAACAGTAAGTTC  997

seq1  ACTGCAGACCTTCACTTCTGCTTCAGT-CCCTCTCAGTTCAGTTCCCAGT  1047
      ||||||||||||||| ||||||||||| |||||||||| ||| |||| ||
seq2  ACTGCAGACCTTCACCTCTGCTTCAGTCCCCTCTCAGTACAG-TCCCGGT  1046

seq1  TCTTATTCCCACTCC  1062
      |||||||| ||||||
seq2  TCTTATTCTCACTCC  1061

seq1: chr3_17691994_17693084
seq2: B6Ng01-331A21.g_65_1147 (reverse)

seq1  AATGAAGAAGAAATGGGGCTCACATACTATTCTCCTCCTTTTATATAATC  50
      |||||||||||||| | |||||||||||||||| ||||| | ||||||||
seq2  AATGAAGAAGAAAT-GAGCTCACATACTATTCT-CTCCTCTAATATAATC  48

seq1  TTAAAAAGTTAAGAAGTCAAATTAATGAAGAAACACATTGACTTAAAATT  100
      |  ||||| |||||||||||||| ||||  ||||||| |||||| |||||
seq2  T--AAAAG-TAAGAAGTCAAATT-ATGAGAAAACACA-TGACTT-AAATT  92

seq1  TTCCAAAGCACTGGAGCTTGTTCCTTCATATGGATCAAAACCATGGACAG  150
      ||||||||||||||||||  | |||||||||||||| |||||||||||||
seq2  TTCCAAAGCACTGGAGCTGTTCCCTTCATATGGATC-AAACCATGGACAG  141

seq1  CGAACTAGTTATTAAGCAAACCGACTCCAGCAAAATTGTGTGTGAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACTAGTTATTAAGCAAACCGACTCCAGCAAAATTGTGTGTGAAATTT  191

seq1  TACCTTCATAGCATCTGTTGGAGGC-AACGAAAATTTTATTTTATAACAA  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TACCTTCATAGCATCTGTTGGAGGCAAACGAAAATTTTATTTTATAACAA  241

seq1  TTTGGAATAAATCTTGAATTTAAAACTAAAATTTGAATTTAAGGGATACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATAAATCTTGAATTTAAAACTAAAATTTGAATTTAAGGGATACT  291

seq1  GTATGCATTCTACCACGTTTTAAGGAAATGATAATTCATATCTTCAACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCATTCTACCACGTTTTAAGGAAATGATAATTCATATCTTCAACAT  341

seq1  CTGTCCTTTCTCATGGATGTGACTTTTTAAAAATCAAACTAAAGGTCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTCTCATGGATGTGACTTTTTAAAAATCAAACTAAAGGTCATT  391

seq1  TCTACCTTATGTCACTAGTAAATTACAGTTTTAAATACATTCATTTTGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTATGTCACTAGTAAATTACAGTTTTAAATACATTCATTTTGGT  441

seq1  ATGGGATGTTTGTTATAGGACATACAGCTGAATAAAGAAAGAGAAATTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGTTTGTTATAGGACATACAGCTGAATAAAGAAAGAGAAATTTT  491

seq1  ATATTTTGTCTGGGATTAGCTGAATGACACTAGAGCAAATTAAATAGATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGTCTGGGATTAGCTGAATGACACTAGAGCAAATTAAATAGATT  541

seq1  TTTATCAGTGACTAGGTTTCTAAATGCATAGAATTGGAAAAATTAAATGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCAGTGACTAGGTTTCTAAATGCATAGAATTGGAAAAATTAAATGC  591

seq1  CACTTTGATAGACAGGGATAATATGAATAGAGATATGACTCCCATACCCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGATAGACAGGGATAATATGAATAGAGATATGACTCCCATACCCC  641

seq1  CATTTATTTCTGGACAGACACTATAGTGCATAACTAACTGTGCAGTGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTTCTGGACAGACACTATAGTGCATAACTAACTGTGCAGTGACT  691

seq1  GGTTAGACGGACACTCACCCTAACCCCCAGGAAAACAACAGACTTTCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGACGGACACTCACCCTAACCCCCAGGAAAACAACAGACTTTCACA  741

seq1  TACATATTGATCCAGGTTAGGGCACAGGTTTGGTTCACTGTGGCTCTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTGATCCAGGTTAGGGCACAGGTTTGGTTCACTGTGGCTCTGTG  791

seq1  TCAAATAACTATATTGCTTTTTGCATGAGTTTCATTACCTTAACCTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAACTATATTGCTTTTTGCATGAGTTTCATTACCTTAACCTTTTC  841

seq1  AGAAGTGAAATTCATCACAATTATTTCTCTTGTGGATTATATAACTGCTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGAAATTCATCACAATTATTTCTCTTGTGGATTATATAACTGCTC  891

seq1  CCTTAAATTTTCACTTTCAACCCTGTGACTTCTGACTTATTTTGTAACCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAATTTTCACTTTCAACCCTGTGACTTCTGACTTATTTTGTAACCA  941

seq1  GTCTTCTTTGTGACCTGTAAAGGCCTGGAAGATCGTATAAATCATTAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTTTGTGACCTGTAAAGGCCTGGAAGATCGTATAAATCATTAACA  991

seq1  ACACACAGGTTAGAAAAATTAAAAAAAAACAATTTACATTTAAATTTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGGTTAGAAAAATTAAAAAAAAACAATTTACATTTAAATTTGAA  1041

seq1  ATAAAATTCAAGTGACGTTGAGATTTGTAAGGCAATGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCAAGTGACGTTGAGATTTGTAAGGCAATGAATTC  1083