BAC Information

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BAC

Clone NameB6Ng01-331C03
Chromosome3 (Build37)
Map Location 45,475,696 - 45,633,886
singlet/doubletdoublet
Overlap geneLOC433580
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331C03.bB6Ng01-331C03.g
ACCGA117587GA117588
length1,1071,088
definitionB6Ng01-331C03.b B6Ng01-331C03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,475,696 - 45,476,791)(45,632,796 - 45,633,886)
sequence
gaattctttgaattcaattatgaatgctttctacttcaattttgaattga
agtagataaatctggagtatattaaacagaaatatgaaggttaaaaccaa
ttgttattataacatttgccataataaaataattattttctgtgcggtca
aaaattttaaaaatggtatttctattatataaacacacacacacacaaat
aacaaaaatataaaaaaaagtagtagtaactgtgaaggttcatgatggga
ttttaggagcacaaatatattaaaaatgtttttaatttttcttatctaat
attaaaacatctcataagacaaacattttatcactaatagtttggctatg
attctaaatgaagataattataaggatgaagccaagaattatttactcaa
attttcagtaggcaatttctattggaaaacttcattgaaataatggctac
cttgcctttgaaaaatatttagttcatagattttagaaagtaaagtgaac
ctttttgatgcttattcattagcataaagaatctatcaagtgtccctaag
aaaagttttccctaaaggaagctgagatcttacatatggataggtaaaat
agattttacaacttttttcagtagtagaatagtctgttctacaagacagc
agtagtatttacaggctggataatgtgtgtttcctgtagatttaaagctt
aggaaatccatctctctctctctctctctctctctctctctctctctctc
tcacacacacacacacacacacacacacacacacacacacacatttcctg
tagaaatgtgtttacagtttggggaagtgcacataaattccctgcattta
taaaacagtcagatgtggtgcaagttgctttttttgcaggattgcacaac
agactttatgagtcttgctatttatccaacacttcccaatcaaccatctc
tttacaaagacagatgaaggtctgcaaggaggcttcaatggatggagaat
tctttaggtggatagccatgtgcacctgaatttggaattctcaccaaccc
acaaattaagaacagaacataattacagaatggcctatggcctccaggca
ctagggg

gaattcatgaaattcttagacaaatggatgtatctgaggatattatccta
agtgagttaacccaatcacaaaagaacatacatgatttgcactcactgat
aagtagatattagtccagaatatattttcttaatgcttaggaatattttg
attgtcattcattttgtagattttttgaaacatggggttatttatgttca
aatgtctgactttccaattctatttttgtatatggatttttgcctttcct
gtgtacttaggcaaattacctggagcaaaacagtccaaacagtgcactgg
actcatgaagatacatgccataaagttcctttcatcttgttctgcatact
tcatgggataagtcttgccctaagtatgcttcatgcctgctggaatgacc
aaaatcccattccaggaaccagccacacatcaaggacagcaagaagagtg
ttcacttcactctgtaaagtgaattgatttgagccactagaattcaaggt
ggcctgtatttctttgaattttttcaaaactcttctcctagaaatgcacc
cccttttgtcaaggtagttcataagcgcagttatactaacatccccatgg
tttgttgctttttcccattggctaatggaatataagatatctttactgag
cttcttcatcctgattgaatttctcaaaagtgggaaatcatgaatcagaa
aaatcaagagatttttgacctttgtgccttcatgatatgcaaaaaaatgt
atgagctaggatatgcaaccttgatattatctgagatgtagagttgtctc
agcattcatattacttgtgtctacagtgtttaatcttaggctttctggct
agctgtagacttaggaaatggttgtatcatcatagatgccccgaagtcta
ttttctcttctgtgaaagttttaaaggaggatgtggcatcttgagaggaa
gtattcatggtcaccttgccagagattgcaggagcactgctgagggttag
cccggaagggcacatgttggccaatgaaagaagcactcagttgagtgaaa
gtaagggagaagaaattgccctctttgcattgcagagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45475696_45476791
seq2: B6Ng01-331C03.b_51_1157

seq1  GAATTCTTTGAATTCAATTATGAATGCTTTCTACTTCAATTTTGAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAATTCAATTATGAATGCTTTCTACTTCAATTTTGAATTGA  50

seq1  AGTAGATAAATCTGGAGTATATTAAACAGAAATATGAAGGTTAAAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATAAATCTGGAGTATATTAAACAGAAATATGAAGGTTAAAACCAA  100

seq1  TTGTTATTATAACATTTGCCATAATAAAATAATTATTTTCTGTGCGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTATAACATTTGCCATAATAAAATAATTATTTTCTGTGCGGTCA  150

seq1  AAAATTTTAAAAATGGTATTTCTATTATATAAACACACACACACACAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAAAAATGGTATTTCTATTATATAAACACACACACACACAAAT  200

seq1  AACAAAAATATAAAAAAAAGTAGTAGTAACTGTGAAGGTTCATGATGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATATAAAAAAAAGTAGTAGTAACTGTGAAGGTTCATGATGGGA  250

seq1  TTTTAGGAGCACAAATATATTAAAAATGTTTTTAATTTTTCTTATCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGAGCACAAATATATTAAAAATGTTTTTAATTTTTCTTATCTAAT  300

seq1  ATTAAAACATCTCATAAGACAAACATTTTATCACTAATAGTTTGGCTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAACATCTCATAAGACAAACATTTTATCACTAATAGTTTGGCTATG  350

seq1  ATTCTAAATGAAGATAATTATAAGGATGAAGCCAAGAATTATTTACTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATGAAGATAATTATAAGGATGAAGCCAAGAATTATTTACTCAA  400

seq1  ATTTTCAGTAGGCAATTTCTATTGGAAAACTTCATTGAAATAATGGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAGTAGGCAATTTCTATTGGAAAACTTCATTGAAATAATGGCTAC  450

seq1  CTTGCCTTTGAAAAATATTTAGTTCATAGATTTTAGAAAGTAAAGTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTTGAAAAATATTTAGTTCATAGATTTTAGAAAGTAAAGTGAAC  500

seq1  CTTTTTGATGCTTATTCATTAGCATAAAGAATCTATCAAGTGTCCCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGATGCTTATTCATTAGCATAAAGAATCTATCAAGTGTCCCTAAG  550

seq1  AAAAGTTTTCCCTAAAGGAAGCTGAGATCTTACATATGGATAGGTAAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTCCCTAAAGGAAGCTGAGATCTTACATATGGATAGGTAAAAT  600

seq1  AGATTTTACAACTTTTTTCAGTAGTAGAATAGTCTGTTCTACAAGACAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTACAACTTTTTTCAGTAGTAGAATAGTCTGTTCTACAAGACAGC  650

seq1  AGTAGTATTTACAGGCTGGATAATGTGTGTTTCCTGTAGATTTAAAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTATTTACAGGCTGGATAATGTGTGTTTCCTGTAGATTTAAAGCTT  700

seq1  AGGAAATCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  750

seq1  TCACACACACACACACACACACACACACACACACACACACACATTTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACACACACATTTCCTG  800

seq1  TAGAAATGTGTTTACAGTTT-GGGAAGTGCACATAAATTCCCTGCATTTA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TAGAAATGTGTTTACAGTTTGGGGAAGTGCACATAAATTCCCTGCATTTA  850

seq1  TAAAACAGTCAGATGTAGGTGCAAGTTGCTTTTTTTGCAGGATTGCACAA  899
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAAACAGTCAGATGT-GGTGCAAGTTGCTTTTTTTGCAGGATTGCACAA  899

seq1  CAGACTTTATGAGTCTTGCTATTTATTCAACACTTTCCCCAATCAACCAT  949
      |||||||||||||||||||||||||| ||||||||  |||||||||||||
seq2  CAGACTTTATGAGTCTTGCTATTTATCCAACACTT--CCCAATCAACCAT  947

seq1  CTCTTTACAAAGACAGATGAAGGTCTGCAAGGAGGC-TCAATGGAT-GAG  997
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  CTCTTTACAAAGACAGATGAAGGTCTGCAAGGAGGCTTCAATGGATGGAG  997

seq1  AA-TCTTTA-GTTGATAGCCATGTGCACCTGAATTT-GAATTCTCAACAA  1044
      || |||||| || ||||||||||||||||||||||| ||||||||| |||
seq2  AATTCTTTAGGTGGATAGCCATGTGCACCTGAATTTGGAATTCTCACCAA  1047

seq1  -CCACAAA-TAAG-ACAG-ACATATTTACAGA--TGCCTATAG-CTCCA-  1086
       ||||||| |||| |||| ||||| |||||||   |||||| | ||||| 
seq2  CCCACAAATTAAGAACAGAACATAATTACAGAATGGCCTATGGCCTCCAG  1097

seq1  GCACTAGGGG  1096
      ||||||||||
seq2  GCACTAGGGG  1107


seq1: chr3_45632796_45633886
seq2: B6Ng01-331C03.g_65_1152 (reverse)

seq1  GCTCTGCAATGCAAAGAGGGCAATT--CTCTCCCTACTTTTCACTTCAAA  48
      |||||||||||||||||||||||||   |||||||   |||||| |||| 
seq2  GCTCTGCAATGCAAAGAGGGCAATTTCTTCTCCCTTACTTTCAC-TCAA-  48

seq1  CCTGAGTGCTTCTTTCATTGGCCAACATGTGCCCTTCCGGGCTTAACCCT  98
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -CTGAGTGCTTCTTTCATTGGCCAACATGTGCCCTTCCGGGC-TAACCCT  96

seq1  CAGCAGTGCTCCTGCAATCTCTGGGCAAGGTGACCATGAATACTTCCTCT  148
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAGCAGTGCTCCTGCAATCTCT-GGCAAGGTGACCATGAATACTTCCTCT  145

seq1  CAAGATGCCACATCCTCCTTTAAAACTTTCACAGAAGAGAAAATAGACTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGCCACATCCTCCTTTAAAACTTTCACAGAAGAGAAAATAGACTT  195

seq1  CGGGGCATCTATGATGATACAACCATTTCCTAAGTCTACAGCTAGCCAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCATCTATGATGATACAACCATTTCCTAAGTCTACAGCTAGCCAGA  245

seq1  AAGCCTAAGATTAAACACTGTAGACACAAGTAATATGAATGCTGAGACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAAGATTAAACACTGTAGACACAAGTAATATGAATGCTGAGACAA  295

seq1  CTCTACATCTCAGATAATATCAAGGTTGCATATCCTAGCTCATACATTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATCTCAGATAATATCAAGGTTGCATATCCTAGCTCATACATTTT  345

seq1  TTTGCATATCATGAAGGCACAAAGGTCAAAAATCTCTTGATTTTTCTGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATCATGAAGGCACAAAGGTCAAAAATCTCTTGATTTTTCTGAT  395

seq1  TCATGATTTCCCACTTTTGAGAAATTCAATCAGGATGAAGAAGCTCAGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTTCCCACTTTTGAGAAATTCAATCAGGATGAAGAAGCTCAGTA  445

seq1  AAGATATCTTATATTCCATTAGCCAATGGGAAAAAGCAACAAACCATGGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATCTTATATTCCATTAGCCAATGGGAAAAAGCAACAAACCATGGG  495

seq1  GATGTTAGTATAACTGCGCTTATGAACTACCTTGACAAAAGGGGGTGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGTATAACTGCGCTTATGAACTACCTTGACAAAAGGGGGTGCAT  545

seq1  TTCTAGGAGAAGAGTTTTGAAAAAATTCAAAGAAATACAGGCCACCTTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAGAAGAGTTTTGAAAAAATTCAAAGAAATACAGGCCACCTTGA  595

seq1  ATTCTAGTGGCTCAAATCAATTCACTTTACAGAGTGAAGTGAACACTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGTGGCTCAAATCAATTCACTTTACAGAGTGAAGTGAACACTCTT  645

seq1  CTTGCTGTCCTTGATGTGTGGCTGGTTCCTGGAATGGGATTTTGGTCATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGTCCTTGATGTGTGGCTGGTTCCTGGAATGGGATTTTGGTCATT  695

seq1  CCAGCAGGCATGAAGCATACTTAGGGCAAGACTTATCCCATGAAGTATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGGCATGAAGCATACTTAGGGCAAGACTTATCCCATGAAGTATGC  745

seq1  AGAACAAGATGAAAGGAACTTTATGGCATGTATCTTCATGAGTCCAGTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAAGATGAAAGGAACTTTATGGCATGTATCTTCATGAGTCCAGTGC  795

seq1  ACTGTTTGGACTGTTTTGCTCCAGGTAATTTGCCTAAGTACACAGGAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGGACTGTTTTGCTCCAGGTAATTTGCCTAAGTACACAGGAAAG  845

seq1  GCAAAAATCCATATACAAAAATAGAATTGGAAAGTCAGACATTTGAACAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATCCATATACAAAAATAGAATTGGAAAGTCAGACATTTGAACAT  895

seq1  AAATAACCCCATGTTTCAAAAAATCTACAAAATGAATGACAATCAAAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACCCCATGTTTCAAAAAATCTACAAAATGAATGACAATCAAAATA  945

seq1  TTCCTAAGCATTAAGAAAATATATTCTGGACTAATATCTACTTATCAGTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAGCATTAAGAAAATATATTCTGGACTAATATCTACTTATCAGTG  995

seq1  AGTGCAAATCATGTATGTTCTTTTGTGATTGGGTTAACTCACTTAGGATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAATCATGTATGTTCTTTTGTGATTGGGTTAACTCACTTAGGATA  1045

seq1  ATATCCTCAGATACATCCATTTGTCTAAGAATTTCATGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCAGATACATCCATTTGTCTAAGAATTTCATGAATTC  1088


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