BAC Information

Click to search

BAC

Clone NameB6Ng01-331D06
Chromosome3 (Build37)
Map Location 45,606,156 - 45,607,252
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282, LOC433580
Downstream geneLOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331D06.bB6Ng01-331D06.g
ACCGA117641GA117642
length1,1871,113
definitionB6Ng01-331D06.b B6Ng01-331D06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctatcctctttaggactgcaatccttcttgttcttccataagag
tccccaagcttcatccactgtttgactgtgggtgattgcatctgtgtgag
ccagctgctggtggagcctctcagaggacaacatgctccttcctacaaac
ataacagagtatcattagtagtgttagtgattggtgcatgcccatgggat
gggtcttaatttggccccgttattatttggccattccctcagtctcttcc
ccattctcagtgcccctacattacttgtagataaaataaatattgaattg
aaagttttatgggtgtgttagtgtctctgtcactacaaatgtgttcctat
gtggatatgggaggtggcttattcaggtttcatatccccagtgtagtgag
tcacagctgaggtcatacccattgattcttgggcagcacccttatcccag
gttctgtcttgtcctggagatgagtccccaccaccatcaccaccacatac
acacatccttaacccatcagttgcagatttccattaattttcatgaccat
ttagccatctctcctgtctttcctcacacctgatcctaaataccccattc
cccttcctatcccttcctcccagccacccccctccacctccctcttctgt
ctattttagctccccttgtatgtgaaattcaagcttccttctttggtcct
tccctcctgtacttccacccttctttgggtgtgtagagtgtaacatggta
catgcattttatgactaatattcacttataagtgagtacataccattcat
gtcctttaggactgggttacttcactcaagatgtcattctaatgttacat
ccatttgcctgaaaaattcatgatggctttgtttttaatagctgaatagt
attctatttgtatgtgctacattttctttatacattcttgatttgaagga
catctagtttgtttacagtgtctggctattatgaataaagctactatgaa
catagtcaaacaagtgtcatgtagatgatgggattgggggatatggccta
ggtgtgtgatagcctagtctaaggtacacaattcccagttccggaaaaaa
ttatttacaaaatggttgtacagcttgaactcgacagtcaatggaggctg
atccctgtgcctacaatctctaaccagcgcatatatg

gaattctttgtttagctctgtatcccattttttaatggggttatttgaat
ttctggaattcagcttcttgagctctttgtatatattggatattggtccc
ctatcagatttaggattggtaaaaattctttcccaatctgttggtggcct
ttttgttttattgacattatcatttgccctacagaagcttagcaatttta
taaggtcccatttgtcaattcttgatgttacaacacaggccattgctgtt
cttttagggacaatatttaattagggctggcttacaatttcagagtttca
gtccattatcatcaaggcagagcatggcacagtgttcaagctggcatggt
gcagacagagctgagagttctacatcttcatctgaagttggctagcagat
tactggctcccaggcagcaaggacaagggtattaaatcctccacacacga
ggacacacctactctaataaggccaaaactttcaacagtgccactttcta
ggacaagcatatacaaaccatcacactgagggttagagttatggtacatt
tacacttcacatcgctattcaatagcaggtttccagtcctctctttcact
tgagactcaaaacaatattggaaaaatgtaaaataactacaagaagagga
aatatatatttatatattttatataacacacaaatatgaaatatattatt
attttatttaataatatgtaacatttattaatattaacattattaatctg
aaggtataaagccctatgaagttgtggaaattaatttaaggttatctacc
actaaatataaagattgcacatataaattatttttgactggttacacatc
tagttttacaattcttatatttgtgatatgtatggatctgtctattcagt
gtgtgtattaatttcaattacctgaaaacctttccaatattttaatattt
gacatgtgtgggaagtacttcataaatgatgttgtttaaatttactgtat
tcctagtgttattcctgtgctctgaggtcatttgtgagtaactgaagttt
atacacactcaaaagcagatggagttaatcatacctttcatgtaatcatt
ttagtagccgatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45606156_45607252
seq2: B6Ng01-331D06.g_93_1177

seq1  TTTTTAATGGGGTTATTTGAATTTCTGGAATTCAGCTTCTTGAGCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGGGGTTATTTGAATTTCTGGAATTCAGCTTCTTGAGCTCTTT  50

seq1  GTATATATTGGATATTGGTCCCCTATCAGATTTAGGATTGGTAAAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATATTGGATATTGGTCCCCTATCAGATTTAGGATTGGTAAAAATTC  100

seq1  TTTCCCAATCTGTTGGTGGCCTTTTTGTTTTATTGACATTATCATTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCAATCTGTTGGTGGCCTTTTTGTTTTATTGACATTATCATTTGCC  150

seq1  CTACAGAAGCTTAGCAATTTTATAAGGTCCCATTTGTCAATTCTTGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAAGCTTAGCAATTTTATAAGGTCCCATTTGTCAATTCTTGATGT  200

seq1  TACAACACAGGCCATTGCTGTTCTTTTAGGGACAATATTTAATTAGGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACAGGCCATTGCTGTTCTTTTAGGGACAATATTTAATTAGGGCT  250

seq1  GGCTTACAATTTCAGAGTTTCAGTCCATTATCATCAAGGCAGAGCATGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACAATTTCAGAGTTTCAGTCCATTATCATCAAGGCAGAGCATGGC  300

seq1  ACAGTGTTCAAGCTGGCATGGTGCAGACAGAGCTGAGAGTTCTACATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTCAAGCTGGCATGGTGCAGACAGAGCTGAGAGTTCTACATCTT  350

seq1  CATCTGAAGTTGGCTAGCAGATTACTGGCTCCCAGGCAGCAAGGACAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAGTTGGCTAGCAGATTACTGGCTCCCAGGCAGCAAGGACAAGG  400

seq1  GTATTAAATCCTCCACACACGAGGACACACCTACTCTAATAAGGCCAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAATCCTCCACACACGAGGACACACCTACTCTAATAAGGCCAAAA  450

seq1  CTTTCAACAGTGCCACTTTCTAGGACAAGCATATACAAACCATCACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAACAGTGCCACTTTCTAGGACAAGCATATACAAACCATCACACTG  500

seq1  AGGGTTAGAGTTATGGTACATTTACACTTCACATCGCTATTCAATAGCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTAGAGTTATGGTACATTTACACTTCACATCGCTATTCAATAGCAG  550

seq1  GTTTCCAGTCCTCTCTTTCACTTGAGACTCAAAACAATATTGGAAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCAGTCCTCTCTTTCACTTGAGACTCAAAACAATATTGGAAAAATG  600

seq1  TAAAATAACTACAAGAAGAGGAAATATATATTTATATATTTTATATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACTACAAGAAGAGGAAATATATATTTATATATTTTATATAACA  650

seq1  CACAAATATGAAATATATTATTATTTTATTTAATAATATGTAACATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATGAAATATATTATTATTTTATTTAATAATATGTAACATTTAT  700

seq1  TAATATTAACATTATTAATCTGAAGGTATAAAGCCCTATGAAGTTGTGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTAACATTATTAATCTGAAGGTATAAAGCCCTATGAAGTTGTGGA  750

seq1  AATTAATTTAAGGTTATCTACCACTAAATATAAAGATTGCACATATAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTAAGGTTATCTACCACTAAATATAAAGATTGCACATATAAAT  800

seq1  TATTTTTGACTGGTTACACATCTAGTTTTACAATTCTTATATTTGTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTGACTGGTTACACATCTAGTTTTACAATTCTTATATTTGTGATA  850

seq1  TGTATGGATCTGTCTATTCAGTGTGTGTATTAATTTCAATTACCTGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGATCTGTCTATTCAGTGTGTGTATTAATTTCAATTACCTGAAAA  900

seq1  CCTTTCCAATATTTTAAATATTTGAACATGTGTGGGAAGTAACTTCATAA  950
      ||||||||||||||| |||||||| ||||||||||||||| |||||||||
seq2  CCTTTCCAATATTTT-AATATTTG-ACATGTGTGGGAAGT-ACTTCATAA  947

seq1  ATGATGTTGTTTAAATTTACTGTAATTCCTAGGTGTATTCCTGTGCTCTG  1000
      ||||||||||||||||||||||| ||||||||   |||||||||||||||
seq2  ATGATGTTGTTTAAATTTACTGT-ATTCCTAGTGTTATTCCTGTGCTCTG  996

seq1  AAGTTCATTTGTGGAGTAACTTGAGTTTATACACACTCAAAAAAGCAGAT  1050
       || |||||||| ||||||||  |||||||||||||||  ||||||||||
seq2  -AGGTCATTTGT-GAGTAACTGAAGTTTATACACACTC--AAAAGCAGAT  1042

seq1  GGAGTTATTCATACTTTTCAATGTATTCATTTTTAAAGTAGCAGATC  1097
      ||||||| |||||| |||| ||||| |||||||   |||||| ||||
seq2  GGAGTTAATCATACCTTTC-ATGTAATCATTTT---AGTAGCCGATC  1085


| Home | SequenceCutter | Blast | Download |