BAC Information

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BAC

Clone NameB6Ng01-331F08
Chromosome3 (Build37)
Map Location 45,363,739 - 45,476,726
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331F08.bB6Ng01-331F08.g
ACCGA117728GA117729
length1,164273
definitionB6Ng01-331F08.b B6Ng01-331F08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,363,739 - 45,364,899)(45,476,454 - 45,476,726)
sequence
gaattccaagcccgaggtcttgctcaaggacgttctaggactgttggaac
actggctttagctatgtcagaattcaatcttaaaaggcacttatgatagg
gtaatactaaaggagagcacgtggatccatacactagactaacgcgggaa
cggaatattaatgtatgggttagagagaacgccagactccaggagcgagt
ttctgtgaaactcttctgcctcagtgagtagcttctaagcctctgggctt
gtcaagctgactggaccagatcgcatggcaatctgtaacttcagctccag
ggggtctaaagatctcttcctgtttccaaagtcattaacacttgtgcccc
acactcataaattaattaattagttagttaattaattaattaacagagaa
agtttgaaacttagctgttttttgcctctaaattatttcatcaatattca
tgctgtatgtgtcatgacatctttcctttgcaaggctaagtaatatttta
ttgaatgcataggatatatttctttatcttttcttctacctagagacact
tgggttatctctacttttgattccaggctattttcaattatagcgtgtat
attactatgtaaggattttgcatacatactcatactcaaaaggggaatta
ctatggtaaatgtatttgtcaatttttgaggagttgaatatacttattgc
tttttgctttgactaccttatcttatattctccaacaaaattcctggcag
tctgatttctccatatacttgacaaaagatcatcatcattcttttattta
aaattagttttctgtcctttcatcaccttctttgatgaccttatattaat
catcatggtattacttaattatatatctaactctgcccaattggttgata
taccaggcactttgatgactattacatgtacacatatcatatgatttgtt
ctaagcattcagttattgcttaatttacatttttgttgtgtgtacatgca
tagtatgttacgatatacttcagtagtataaatgatgaattaattatcaa
atatatcaaatattattttaacaccacacaaaacaagaacatttttctct
aatatattctgggatatatctttctagctcacaagccatgcacattgagc
tttcataggaaatc

aaattcaggtgcacatggctatcaactaaagattctcatccattgagcct
ccttgcagaccttcatctgtctttgtaaagagatggttgattggggaaag
tgttgaataaatagcaagactcataaagtctgttgtgcaatcctgcaaaa
aaagcaacttgcacctacatctgactgttttataaatgcagggaatttat
gtgcacttcccaaactgtaaacacatttctacaggaaatgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45363739_45364899
seq2: B6Ng01-331F08.b_47_1210

seq1  GAATTCCAAGCCCGAGGTCTTGCTCAAGGACGTTCTAGGACTGTTGGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCGAGGTCTTGCTCAAGGACGTTCTAGGACTGTTGGAAC  50

seq1  ACTGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATGATAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTTAGCTATGTCAGAATTCAATCTTAAAAGGCACTTATGATAGG  100

seq1  GTAATACTAAAGGAGAGCACGTGGATCCATACACTAGACTAACGCGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACTAAAGGAGAGCACGTGGATCCATACACTAGACTAACGCGGGAA  150

seq1  CGGAATATTAATGTATGGGTTAGAGAGAACGCCAGACTCCAGGAGCGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATATTAATGTATGGGTTAGAGAGAACGCCAGACTCCAGGAGCGAGT  200

seq1  TTCTGTGAAACTCTTCTGCCTCAGTGAGTAGCTTCTAAGCCTCTGGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAAACTCTTCTGCCTCAGTGAGTAGCTTCTAAGCCTCTGGGCTT  250

seq1  GTCAAGCTGACTGGACCAGATCGCATGGCAATCTGTAACTTCAGCTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCTGACTGGACCAGATCGCATGGCAATCTGTAACTTCAGCTCCAG  300

seq1  GGGGTCTAAAGATCTCTTCCTGTTTCCAAAGTCATTAACACTTGTGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTAAAGATCTCTTCCTGTTTCCAAAGTCATTAACACTTGTGCCCC  350

seq1  ACACTCATAAATTAATTAATTAGTTAGTTAATTAATTAATTAACAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATAAATTAATTAATTAGTTAGTTAATTAATTAATTAACAGAGAA  400

seq1  AGTTTGAAACTTAGCTGTTTTTTGCCTCTAAATTATTTCATCAATATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAACTTAGCTGTTTTTTGCCTCTAAATTATTTCATCAATATTCA  450

seq1  TGCTGTATGTGTCATGACATCTTTCCTTTGCAAGGCTAAGTAATATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTATGTGTCATGACATCTTTCCTTTGCAAGGCTAAGTAATATTTTA  500

seq1  TTGAATGCATAGGATATATTTCTTTATCTTTTCTTCTACCTAGAGACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGCATAGGATATATTTCTTTATCTTTTCTTCTACCTAGAGACACT  550

seq1  TGGGTTATCTCTACTTTTGATTCCAGGCTATTTTCAATTATAGCGTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTATCTCTACTTTTGATTCCAGGCTATTTTCAATTATAGCGTGTAT  600

seq1  ATTACTATGTAAGGATTTTGCATACATACTCATACTCAAAAGGGGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTATGTAAGGATTTTGCATACATACTCATACTCAAAAGGGGAATTA  650

seq1  CTATGGTAAATGTATTTGTCAATTTTTGAGGAGTTGAATATACTTATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTAAATGTATTTGTCAATTTTTGAGGAGTTGAATATACTTATTGC  700

seq1  TTTTTGCTTTGACTACCTTATCTTATATTCTCCAACAAAATTCCTGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTTGACTACCTTATCTTATATTCTCCAACAAAATTCCTGGCAG  750

seq1  TCTGATTTCTCCATATACTTGACAAAAGACCATCATCATTCTTTTATTTA  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCTGATTTCTCCATATACTTGACAAAAGATCATCATCATTCTTTTATTTA  800

seq1  AAATTAGTTTTCTGTCCTTTCATCACCTTCTTTGATGACCTTATATTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGTTTTCTGTCCTTTCATCACCTTCTTTGATGACCTTATATTAAT  850

seq1  CATCATGGTATTACTTAATTATATATCTAACTCTGCCCAATTGGTTGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGTATTACTTAATTATATATCTAACTCTGCCCAATTGGTTGATA  900

seq1  TACCAGGCACTTTGATGACTATTACATGTACACATATCATATGATTTGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGCACTTTGATGACTATTACATGTACACATATCATATGATTTGTT  950

seq1  CTAAGCATTCAGTTATTGCTTAATTTACATTTTTGTTGTGTGTACATGCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATTCAGTTATTGCTTAATTTACATTTTTGTTGTGTGTACATGCA  1000

seq1  TAGTTATGTTACGATATACTTCAGTAGTATAAATGATGAA-TAAATATCA  1049
      ||| |||||||||||||||||||||||||||||||||||| ||| |||||
seq2  TAG-TATGTTACGATATACTTCAGTAGTATAAATGATGAATTAATTATCA  1049

seq1  AATATATTCAAAATATATTTAACACCAACAC-AAACAAG-ACATTTTTCT  1097
      |||||||  || ||   ||||||||| |||| ||||||| ||||||||||
seq2  AATATATCAAATATTATTTTAACACC-ACACAAAACAAGAACATTTTTCT  1098

seq1  TCTATATA-TCT-GGATATATCCTTCTAGCTCACA--GCATGCACATTTA  1143
         ||||| ||| ||||||||| ||||||||||||   ||||||||||  
seq2  CTAATATATTCTGGGATATATCTTTCTAGCTCACAAGCCATGCACATT--  1146

seq1  AATTTTTCATAAGAAATC  1161
       |  ||||||| ||||||
seq2  GAGCTTTCATAGGAAATC  1164


seq1: chr3_45476454_45476726
seq2: B6Ng01-331F08.g_73_345 (reverse)

seq1  ACACACACACACACACACACACACACACACACACATTTCCTGTAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACATTTCCTGTAGAAATG  50

seq1  TGTTTACAGTTTGGGAAGTGCACATAAATTCCCTGCATTTATAAAACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAGTTTGGGAAGTGCACATAAATTCCCTGCATTTATAAAACAGT  100

seq1  CAGATGTAGGTGCAAGTTGCTTTTTTTGCAGGATTGCACAACAGACTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTAGGTGCAAGTTGCTTTTTTTGCAGGATTGCACAACAGACTTTA  150

seq1  TGAGTCTTGCTATTTATTCAACACTTTCCCCAATCAACCATCTCTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTGCTATTTATTCAACACTTTCCCCAATCAACCATCTCTTTACA  200

seq1  AAGACAGATGAAGGTCTGCAAGGAGGCTCAATGGATGAGAATCTTTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGATGAAGGTCTGCAAGGAGGCTCAATGGATGAGAATCTTTAGTT  250

seq1  GATAGCCATGTGCACCTGAATTT  273
      |||||||||||||||||||||||
seq2  GATAGCCATGTGCACCTGAATTT  273


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