BAC Information

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BAC

Clone NameB6Ng01-331I23
Chromosome3 (Build37)
Map Location 118,902,140 - 118,903,303
singlet/doubletsinglet
Overlap geneDpyd
Upstream genenone
Downstream geneLOC100043275, LOC100043278, Ptbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331I23.bB6Ng01-331I23.g
ACCGA117891GA117892
length9141,158
definitionB6Ng01-331I23.b B6Ng01-331I23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccgggtgcagaagtctctagatggtccatccttttgtctcacct
ccaaactttgtctctgtaactccttccatgggtgttttgttcccaattct
acgaaggggcgaagtgtccacacttaatgttttaaatgatatctttaatg
cctgaaattctgttttttgtttgtttgtttgtttgttttgttttgtttaa
tcacttatattctcttggttaggcttgcctctatttgagttcctgaattt
tcctaattccaattttccctaaggttttgtttgtttgtttattattttac
tttattttattttacttccaatttcaggtctggactgtttatatttattt
ccttacactatttgtttgcatttttatacatttctataagggatttctta
atttcctattcaagaaaatctttcatatacatagaggctattttaaggta
tttgcgttgtgctttgggtattttgcacttctcagggacttctgtggtag
gattcctgaaatctaatggattatcctggctgttcttgattgtgttttta
cagtgatatcaggtatcttggtttagaaagattgtatttctagatactga
tacccgctcttgtgtctttattgtttgtgtgttttgtttcttggtctcat
ggtttcttaccctctttggttcttaggaagatgcaattactttaggtaaa
ttttctgggatcctgctaggtgtggccacagggaattcccaataaaatat
attcctaggtattaggcacagctacttaagaatgggaatggtctgaggat
tatgagtgagtccataggagggagaaaagcagtcttctaccaagacctgc
ttaaatctcctggaatggagaaagagaacaaggaaaggtcacagcaagaa
aaaacagaaaatga

gaattctctcttctaattgattccttgttgcatgattcatcaacacattg
tttcctaaattttatcattacctattaaattattttaaacatttcagtgt
taaaacttttgcttttattgatgaggatggttacaatagatagtttaaat
ttcatgacggatagtaggcgtgtttttctaaggcttttatgcatcggtaa
tcatgtgattgatacatttaaaaaaattcaaccctttaatgactacttcc
taataaaaaataccaacactgtattttatgatgtaattgtgctatgtaat
ataaggtcttaaagtgatctgccaaaatcagtagtatcttgtatgtttga
aaaatgttacttaaagaaaaggataactaaaacttttgagtttccaatct
attgtatgttttactgtctttccagctttacacaaatagttactggcaca
ccatcataataaacttaagtttgcgatgaagtaagcttacactgcatttg
tatttatgaagtatccagtgacagtatgggctccgctaagttatatcaac
cctatagtttggcctaagtaactatctttaaaaccagtgtaagttctata
ttcaaagtgaagttaatattcaaagtcttggactggttagatggctcaga
atagggaaaggcatgtgccacaaaacttgggtgcctgagtgcaatctctg
agtcctatatggtgaaagagaacagactttttcaagttgttctctactct
tcatgtatgcactatggcatgattgttcctatacacacacacacacacac
acacacatacacccctagctccttgggtgttaatacatgaattagctatg
gatatagcaagatttctacctatattttagaaataagaacattacttgat
aacaacttaagagtatttttctatactatccagagaaagtggagaacaat
tactgtttacaatcattaattcttcttacacttatttatttatggcacat
tagggccaggcttgaatgctactgcacaacatgtgtgaatctctttttct
tacatggtgggttctgggcaatgcgtttttcttctatgttgcctttcttc
atttaacttatgtccattattcaacagaactgtcaagtaggacttatcag
ttatccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_118902140_118903303
seq2: B6Ng01-331I23.g_69_1226 (reverse)

seq1  TAGGATAACTGATTAAGCTCCTTAACTTACAAGTGTTTCTGTTTAAATTA  50
      |||||||||||| |||| ||||  ||||   ||   ||||| || ||| |
seq2  TAGGATAACTGA-TAAG-TCCT--ACTTGACAG---TTCTG-TTGAATAA  42

seq1  TTGACATAAG-TAAATGA--GAAGGC-ACATAG-AGAAAAAGGCATTTGC  95
      | |||||||| |||||||   ||||| |||||| ||||||| ||| ||||
seq2  TGGACATAAGTTAAATGAAGAAAGGCAACATAGAAGAAAAACGCA-TTGC  91

seq1  CCAGAACCCA-CATGGTAG-AAAAGAGATTCCACACATG-TGTGCAGTAG  142
      |||||||||| ||||  || |||||||||| |||||||| ||||||||||
seq2  CCAGAACCCACCATGTAAGAAAAAGAGATT-CACACATGTTGTGCAGTAG  140

seq1  CATTCAAGCCCTGGCCCTAAATGTGCCATAAATAAATAAGTGTAAGAAGA  192
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CATTCAAG-CCTGGCCCT-AATGTGCCATAAATAAATAAGTGTAAGAAGA  188

seq1  ATTAATTGATTGTAAACAGTAATTGTTCTCCACCTTTCTCTGGATAGTAT  242
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  ATTAA-TGATTGTAAACAGTAATTGTTCTCCA-CTTTCTCTGGATAGTAT  236

seq1  AGAAAAATACTCTTAAGTTGTTATCAAGTAATGTTCTTATTTCTAAAATA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATACTCTTAAGTTGTTATCAAGTAATGTTCTTATTTCTAAAATA  286

seq1  TAGGTAGAAATCTTGCTATATCCATAGCTAATTCATGTATTAACACCCAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGAAATCTTGCTATATCCATAGCTAATTCATGTATTAACACCCAA  336

seq1  GGAGCTAGGGGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATAGGAACAA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTAGGGGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATAGGAACAA  386

seq1  TCATGCCATAGTGCATACATGAAGAGTAGAGAACAACTTGAAAAAGTCTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCATAGTGCATACATGAAGAGTAGAGAACAACTTGAAAAAGTCTG  436

seq1  TTCTCTTTCACCATATAGGACTCAGAGATTGCACTCAGGCACCCAAGTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTCACCATATAGGACTCAGAGATTGCACTCAGGCACCCAAGTTT  486

seq1  TGTGGCACATGCCTTTCCCTATTCTGAGCCATCTAACCAGTCCAAGACTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACATGCCTTTCCCTATTCTGAGCCATCTAACCAGTCCAAGACTT  536

seq1  TGAATATTAACTTCACTTTGAATATAGAACTTACACTGGTTTTAAAGATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAACTTCACTTTGAATATAGAACTTACACTGGTTTTAAAGATA  586

seq1  GTTACTTAGGCCAAACTATAGGGTTGATATAACTTAGCGGAGCCCATACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTAGGCCAAACTATAGGGTTGATATAACTTAGCGGAGCCCATACT  636

seq1  GTCACTGGATACTTCATAAATACAAATGCAGTGTAAGCTTACTTCATCGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGGATACTTCATAAATACAAATGCAGTGTAAGCTTACTTCATCGC  686

seq1  AAACTTAAGTTTATTATGATGGTGTGCCAGTAACTATTTGTGTAAAGCTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTAAGTTTATTATGATGGTGTGCCAGTAACTATTTGTGTAAAGCTG  736

seq1  GAAAGACAGTAAAACATACAATAGATTGGAAACTCAAAAGTTTTAGTTAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACAGTAAAACATACAATAGATTGGAAACTCAAAAGTTTTAGTTAT  786

seq1  CCTTTTCTTTAAGTAACATTTTTCAAACATACAAGATACTACTGATTTTG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTAAGTAACATTTTTCAAACATACAAGATACTACTGATTTTG  836

seq1  GCAGATCACTTTAAGACCTTATATTACATAGCACAATTACATCATAAAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCACTTTAAGACCTTATATTACATAGCACAATTACATCATAAAAT  886

seq1  ACAGTGTTGGTATTTTTTATTAGGAAGTAGTCATTAAAGGGTTGAATTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGGTATTTTTTATTAGGAAGTAGTCATTAAAGGGTTGAATTTT  936

seq1  TTTAAATGTATCAATCACATGATTACCGATGCATAAAAGCCTTAGAAAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGTATCAATCACATGATTACCGATGCATAAAAGCCTTAGAAAAA  986

seq1  CACGCCTACTATCCGTCATGAAATTTAAACTATCTATTGTAACCATCCTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTACTATCCGTCATGAAATTTAAACTATCTATTGTAACCATCCTC  1036

seq1  ATCAATAAAAGCAAAAGTTTTAACACTGAAATGTTTAAAATAATTTAATA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATAAAAGCAAAAGTTTTAACACTGAAATGTTTAAAATAATTTAATA  1086

seq1  GGTAATGATAAAATTTAGGAAACAATGTGTTGATGAATCATGCAACAAGG  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGATAAAATTTAGGAAACAATGTGTTGATGAATCATGCAACAAGG  1136

seq1  AATCAATTAGAAGAGAGAATTC  1164
      ||||||||||||||||||||||
seq2  AATCAATTAGAAGAGAGAATTC  1158


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