BAC Information

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BAC

Clone NameB6Ng01-331M13
Chromosome3 (Build37)
Map Location 134,707,565 - 134,866,357
singlet/doubletdoublet
Overlap geneLOC100039290
Upstream geneLOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837
Downstream geneEG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331M13.bB6Ng01-331M13.g
ACCGA118062GA118063
length1,091426
definitionB6Ng01-331M13.b B6Ng01-331M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,865,314 - 134,866,357)(134,707,565 - 134,707,997)
sequence
gaattcctgatgtttcctacctctgttcccctgtgggtgcttgaaatcat
tatgtgcactagggtggccttgaactcacatcgagcggcttgactctacc
ttcaggattaaaggtatatgccattacacctgattttgagattattttta
acacctaacccactgccaacaactaactaactaaccgcatggataaaatc
tatcccctaaatatttttgaacctttgtgttcccctgcatgatgaatatg
atagatatatttccatttcttctttgtttaaatgtgtgtcttttgatgca
tcagctggcagtagggaccttgcacttgaaatcttgatgctgcaacaaga
aacaaaacaactgaaatacttgtaaatgagatcctttcttgatgcctgtt
ctccactgaagtttctatacagacaaaattaaccaaaatatccatgaagt
cgcttcctgaatatggtattactggaagaggctctaatatggcaaactct
aaaagcattatgatatttgtgatatccaatcttcactgtatgcttgattc
gattgaaaaaaatgcttaagacactaatgaagtacatctacatgtatgta
tgatgctgttttcagagatggttagagcttgagggctgggacataataaa
ttgtctaatccattcatggaatcagaaccttattcattatttggatgtgg
aggctccgtataagatggagtataaatggaggaagaatgtcatttgagat
gtgtccttggagcatgtgcctttctttaccccccctttgctactactgct
gtgattcttgtttgacaggaggtgaagaaactatactattaggatctcac
tgacatgatcgtctaccttgttctgggtcagaactcatggacacaaggat
atgtactgaaatttctaaaactgtaagctaaaatacaccccctcacctta
aattaaatttcggatgaggtatttagggtaacagctatgtacaacaaata
gcttgagtgggtactatgacatctcgggaacatacatgtatgaataatat
cgtacagcccttataagtttaggaatcttgaatggtcttct
cctgcaccagaggaaaaatgatttatccaggctgcttccagggtgagaca
aatgatgatctgtttcttggctaccttttcctcttcctattgactaaaag
gtataagatttcatttggcgcctctaacttcagccgtgggagtctgtgac
tgacaatccccatggtcaggataaatctacagattccatgaaagttgaac
ttctatgtccaaaattagtggggaatcatggttttacaaatggggtctac
gtttgaattattaaaatacatgtgtgatctgaacttaaaatacgataatc
atggcttcacagtgtgttttttccagactctactgtaaactctcaagtag
taggtgaatataccaccacagtatagagtagagtagagtagagtagagta
gagtagagtagagtagagtagagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134865314_134866357
seq2: B6Ng01-331M13.b_82_1133 (reverse)

seq1  AGAAGACCCTTCATGGATCCTAAAC-TAT-ATGGCTGT-CGATATTA-TC  46
      |||||||| |||| |  |||||||| ||| | |||||| |||||||| ||
seq2  AGAAGACCATTCAAGATTCCTAAACTTATAAGGGCTGTACGATATTATTC  50

seq1  ATACATGTATCT--CAGAGATGTCATAGTACCCACTCATGCTAATTGCTG  94
      |||||||||| |  | |||||||||||||||||||||| |||| ||| ||
seq2  ATACATGTATGTTCCCGAGATGTCATAGTACCCACTCAAGCTATTTGTTG  100

seq1  TTACATAGCTGTTA-CCAAAATACCT-AACAGAAATTTAAATTTAAGGTG  142
       ||||||||||||| || |||||||| | | ||||||| |||||||||||
seq2  -TACATAGCTGTTACCCTAAATACCTCATCCGAAATTT-AATTTAAGGTG  148

seq1  A-GGGGTGTATTTTAGCTTACAGTTTTAGAAATTTCAGTACATATCCTTG  191
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTGTATTTTAGCTTACAGTTTTAGAAATTTCAGTACATATCCTTG  198

seq1  TGTCCATGAGTTCTGACCCATAACAAGGTAGACCATCATGTCAGTGAGAT  241
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TGTCCATGAGTTCTGACCCAGAACAAGGTAGACGATCATGTCAGTGAGAT  248

seq1  CCTAATAGTATAGTTTCTTCACCTCCTGTCAAACAAGAATCACAGCAGTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAGTATAGTTTCTTCACCTCCTGTCAAACAAGAATCACAGCAGTA  298

seq1  GTAGCAAAGGGGGGCTAAAGAAAGGCACATGCTCCAAGGACACATCTCAA  341
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTAGCAAAGGGGGGGTAAAGAAAGGCACATGCTCCAAGGACACATCTCAA  348

seq1  ATGACATTCTTCCTCCATTTATACTCCATCTTCTACGGAGCCTCCACATC  391
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATGACATTCTTCCTCCATTTATACTCCATCTTATACGGAGCCTCCACATC  398

seq1  CAAATAATGAATAAGGTTCTGATTCCATGAATGGATTAGACAATTTATTA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGAATAAGGTTCTGATTCCATGAATGGATTAGACAATTTATTA  448

seq1  TGTCCCAGCCCTCAAGCTCTAACCATCTCTGAAAACAGCATCATACATAC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGCCCTCAAGCTCTAACCATCTCTGAAAACAGCATCATACATAC  498

seq1  ATGTAGATGTACTTCACTAGTCTTTTAAGCATTTTTTTCAATCGAATCAA  541
      |||||||||||||||| |||| | ||||||||||||||||||||||||||
seq2  ATGTAGATGTACTTCATTAGTGTCTTAAGCATTTTTTTCAATCGAATCAA  548

seq1  GCATACAGTGAAGATTGGATATCACAAATATCATAATGCTTTTAGAGTTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAGTGAAGATTGGATATCACAAATATCATAATGCTTTTAGAGTTT  598

seq1  TACATATTAGAGCCACTTCAACTACTACCATTTTCAGGAAGTGACTTCAT  641
        |||||||||||| |||| | || |||||| ||||||||| ||||||||
seq2  GCCATATTAGAGCCTCTTCCAGTAATACCATATTCAGGAAGCGACTTCAT  648

seq1  GGATATTTTGGCTAATTTTGTCTGTATAGAAACTTCAGTGGAGAACAGGC  691
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGATATTTTGGTTAATTTTGTCTGTATAGAAACTTCAGTGGAGAACAGGC  698

seq1  ATCAAGAAAGGATCTCATTTACAAGTATTTCACTTGTTCTGTTTCTTGTT  741
      |||||||||||||||||||||||||||||||| ||||| |||||||||||
seq2  ATCAAGAAAGGATCTCATTTACAAGTATTTCAGTTGTTTTGTTTCTTGTT  748

seq1  GCAGCATCAAGATCTCAAGAGCAAGGTCCCTACTGCCAGCTGATGCATCA  791
      ||||||||||||| ||||| ||||||||||||||||||||||||||||||
seq2  GCAGCATCAAGATTTCAAGTGCAAGGTCCCTACTGCCAGCTGATGCATCA  798

seq1  AAAGACACACATTTAAACAAAGAAGAAATGGAAATATATCTATCATATAC  841
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAAGACACACATTTAAACAAAGAAGAAATGGAAATATATCTATCATATTC  848

seq1  ATCATGCAGGGGAACACAAAGGTTCAAAAATATTTAGGGGATAGATTTTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCAGGGGAACACAAAGGTTCAAAAATATTTAGGGGATAGATTTTA  898

seq1  ACCATGCGGTTAGTTAGTTAGTTGTAGGCACTGGGTTAGGTGTTAAAAAT  941
       |||||||||||||||||||||||| |||| |||||||||||||||||||
seq2  TCCATGCGGTTAGTTAGTTAGTTGTTGGCAGTGGGTTAGGTGTTAAAAAT  948

seq1  AATCTC-AAACCAGGTGTAATGGCATATACCTTTAATCCTGAAGGTAGAG  990
      |||||| ||| |||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAAATCAGGTGTAATGGCATATACCTTTAATCCTGAAGGTAGAG  998

seq1  TCAAGCAGATCTTTGTGAGTTCAAGGCCACCCTAGTCTACATAATGATTT  1040
      |||||| | ||  |||||||||||||||||||||||  ||||||||||||
seq2  TCAAGCCGCTCGATGTGAGTTCAAGGCCACCCTAGTGCACATAATGATTT  1048

seq1  CAAG  1044
      ||||
seq2  CAAG  1052

seq1: chr3_134707565_134707997
seq2: B6Ng01-331M13.g_71_502

seq1  GAATTCCCTCATACAAGAGGAAAAATGATTTATCCAGGCTGCAGCAAGTG  50
      |||||||||   || |||||||||||||||||||||||||||  | || |
seq2  GAATTCCCT-GCACCAGAGGAAAAATGATTTATCCAGGCTGCTTCCAGGG  49

seq1  TGTGACAAAGCTAGATCTGTTTCTTGGCTACCTTTTCCTCTTCCTATTTG  100
      || ||||||    |||||||||||||||||||||||||||||||||||  
seq2  TGAGACAAATGATGATCTGTTTCTTGGCTACCTTTTCCTCTTCCTATTGA  99

seq1  CTTAAAGGTATAAGATTTCATTTGGCGCCTCTAACTTCAGTCATGGTAGT  150
      || ||||||||||||||||||||||||||||||||||||| | ||| |||
seq2  CTAAAAGGTATAAGATTTCATTTGGCGCCTCTAACTTCAGCCGTGGGAGT  149

seq1  CTGTCTTTGACAATCACCAGGCTCAGGATAAATCTTCAGATTCCATGAAA  200
      ||||   |||||||| ||| | ||||||||||||| ||||||||||||||
seq2  CTGTGACTGACAATCCCCATGGTCAGGATAAATCTACAGATTCCATGAAA  199

seq1  GTTGAACATCAATGTCAAAATTAAGTGGGGAATCTACGTTTTACAAATGG  250
      ||||||| || ||||| ||| | |||||||||||   |||||||||||||
seq2  GTTGAACTTCTATGTCCAAAATTAGTGGGGAATCATGGTTTTACAAATGG  249

seq1  GGTCTACATTTGAATTATTAAAATACATTTGTGATCTGAACTTGAAATCC  300
      ||||||| |||||||||||||||||||| |||||||||||||| |||| |
seq2  GGTCTACGTTTGAATTATTAAAATACATGTGTGATCTGAACTTAAAATAC  299

seq1  TATAATCATGGCTTCACAGTGTTTTTTTTCCAGACTCTACTGTAAACTCT  350
       ||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GATAATCATGGCTTCACAGTGTGTTTTTTCCAGACTCTACTGTAAACTCT  349

seq1  CAAGTAGTAGGTGAATATACCACCACAGTATAGAGTAGAGTAGAGTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTAGGTGAATATACCACCACAGTATAGAGTAGAGTAGAGTAGAG  399

seq1  TAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAT  433
      |||||||||||||||||||||||||||||||||
seq2  TAGAGTAGAGTAGAGTAGAGTAGAGTAGAGTAT  432