BAC Information

Click to search

BAC

Clone NameB6Ng01-331O03
Chromosome3 (Build37)
Map Location 140,908,630 - 140,909,770
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621343, 4930590L14Rik, Pdha2
Downstream geneUnc5c, LOC100039923, Bmpr1b, Gabarapl2-ps3, Pdlim5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331O03.bB6Ng01-331O03.g
ACCGA118138GA118139
length1,1781,139
definitionB6Ng01-331O03.b B6Ng01-331O03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtttagctctgttccccagtttttaatagggttacttggttct
ctggagtctaacttcttgagttctttgtatatattagatataagccctct
attggatgtggtgggtaaagaccttttcccaatctggtggttgccatttt
gtcctattgacaaaatcctttgccttacagcagttttgcaatctcataag
gttccatttgttgattgttgatcttagaggataagccattcctgttcttt
tcaagaaaatttcccctatgcccatgtgttcgaggcttttccccactttc
tcttcacaatagtcattaacaataaaaaatatcttggtgtgactctaagc
acaccagtgaaagatctgtacaagaacttcaagtctctgaagaatgaaat
cgaagaagacctccaaagatataaagaactcctatgctcatggattggca
ggattaatatagtaaaaattgtaattttgctgaaagcaatttacagattc
aatgcaatccccatcaaaattccaactcaaattttcataaagttagaaag
aaaaatcctcataatcatttggaataaaaaaaaaaaaaaaaccaggataa
caaaaccggttctcaacaataaaagactttctgggggaatcaccatcctt
gacctcaagctgtattacagagcaatagtgataaaaactgcatggtattg
gtacagatacaggcaggtagatcaatagaatacaattgaagacccagaaa
tgaactgacacacttatagtcacttgatctttgacaaacaaatcataaat
attgtatctttattcagtacacatagttgtgaatgacattacaggattgt
tattgacctataaacagttatctaaacactataactccagttacctactt
gataacagtcctttctctgataaagaatggcttattttcatttgttttgc
ttgcaaaatatgtaaagtcttaatactaaaattgagattcaaaacttgaa
gtaatccattatatatttaatctttcaaatgctttaacatttgaaaatgc
tgacactgtagattattgagatatgctgttagaagatcttaaattgtatc
aaaaatgtttcttacggagaccttgattggaatctgagtgactggatgtt
tattctagaaaattttaagccttggaat

gaattccttgatgtaagaagtgtgcttggtttatattaatgatattatat
tttctaaaaattaaaaatgatataatgatgcatggataattatactaatt
tatagttaatggcttcaacagtaggaaaagtagtggtttatacaaaaaga
aaatatgttgtatatacttggcatcatttattatttaatgaattactaaa
tatttattaagaaaaatggtttaaaattttgtttaataatggtttgggtc
tcatttcttacatcattatcactttttattattttcccttaatttttaga
ctcatatcaatattactcaaaatggaagactagcatttaactctacccat
atatcttaaagtgttagagaccatctattactacttgaaaattttgcctt
gggtgtcttaattttccacaaactccaaacatcttatttcttaacattgt
ttgaagttttaatcaattttatcattattggaatcattaatttgtttttc
aaataagttacatttggcaacatccagattgtagacctaggcaatgaaag
ttttttggcttctttcaggtagttctgagttccaaaccatagaactcacc
tatgatgagattcaccccaaatataacccctttgtgtttgagaaaatatc
tgtgagccagattttgctataacaaaacacctagaaattatttaaaactt
atcacatgattttacatatttcagttcatagtcactttactcttgtttgg
aggctacagttaagtaaaaccaagatggaaagatgcagagaagcacagaa
gctcatctcttggtggccaggaagcagaaagagagagagagagagagaga
gagagagagagagagagacagagagagagacagagagagagacagagaga
gagacagagagagagacagagagacggagacggagagagagagagacgag
agactgagagagacggagagagagacgagagacgagagagacggagagac
cgagtgagactggtcattagaatctcaaggaaacattccaataggaactc
ttattttcaagagttttcaaggtcttaggtttggccatctctgaataggt
cataaattataaagtgcatccactggataatgaaattaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_140908630_140909770
seq2: B6Ng01-331O03.g_66_1204

seq1  GAATTCCTTGATGTAAGAAGTGTGCTTGGTTTATATTAATGATATTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGATGTAAGAAGTGTGCTTGGTTTATATTAATGATATTATAT  50

seq1  TTTCTAAAAATTAAAAATGATATAATGATGCATGGATAATTATACTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAATTAAAAATGATATAATGATGCATGGATAATTATACTAATT  100

seq1  TATAGTTAATGGCTTCAACAGTAGGAAAAGTAGTGGTTTATACAAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTAATGGCTTCAACAGTAGGAAAAGTAGTGGTTTATACAAAAAGA  150

seq1  AAATATGTTGTATATACTTGGCATCATTTATTATTTAATGAATTACTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTTGTATATACTTGGCATCATTTATTATTTAATGAATTACTAAA  200

seq1  TATTTATTAAGAAAAATGGTTTAAAATTTTGTTTAATAATGGTTTGGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTAAGAAAAATGGTTTAAAATTTTGTTTAATAATGGTTTGGGTC  250

seq1  TCATTTCTTACATCATTATCACTTTTTATTATTTTCCCTTAATTTTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTACATCATTATCACTTTTTATTATTTTCCCTTAATTTTTAGA  300

seq1  CTCATATCAATATTACTCAAAATGGAAGACTAGCATTTAACTCTACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATCAATATTACTCAAAATGGAAGACTAGCATTTAACTCTACCCAT  350

seq1  ATATCTTAAAGTGTTAGAGACCATCTATTACTACTTGAAAATTTTGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTAAAGTGTTAGAGACCATCTATTACTACTTGAAAATTTTGCCTT  400

seq1  GGGTGTCTTAATTTTCCACAAACTCCAAACATCTTATTTCTTAACATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCTTAATTTTCCACAAACTCCAAACATCTTATTTCTTAACATTGT  450

seq1  TTGAAGTTTTAATCAATTTTATCATTATTGGAATCATTAATTTGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTTTAATCAATTTTATCATTATTGGAATCATTAATTTGTTTTTC  500

seq1  AAATAAGTTACATTTGGCAACATCCAGATTGTAGACCTAGGCAATGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTACATTTGGCAACATCCAGATTGTAGACCTAGGCAATGAAAG  550

seq1  TTTTTTGGCTTCTTTCAGGTAGTTCTGAGTTCCAAACCATAGAACTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCTTCTTTCAGGTAGTTCTGAGTTCCAAACCATAGAACTCACC  600

seq1  TATGATGAGATTCACCCCAAATATAACCCCTTTGTGTTTGAGAAAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGAGATTCACCCCAAATATAACCCCTTTGTGTTTGAGAAAATATC  650

seq1  TGTGAGCCAGATTTTGCTATAACAAAACACCTAGAAATTATTTAAAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGCCAGATTTTGCTATAACAAAACACCTAGAAATTATTTAAAACTT  700

seq1  ATCACATGATTTTACATATTTCAGTTCATAGTCACTTTACTCTTGTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATGATTTTACATATTTCAGTTCATAGTCACTTTACTCTTGTTTGG  750

seq1  AGGCTACAGTTAAGTAAAACCAAGATGGAAAGATGCAGAGAAGCACAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACAGTTAAGTAAAACCAAGATGGAAAGATGCAGAGAAGCACAGAA  800

seq1  GCTCATCTCTTGGTGGCCAGGAAGCAGAAAGAGAGAGAGAGAGAGAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCTCTTGGTGGCCAGGAAGCAGAAAGAGAGAGAGAGAGAGAGAGA  850

seq1  GAGAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGA  900

seq1  GAGACAGAGAGAGAGACAGAGAGACAGAGACAGAGAGAGAGAGAGACAGA  950
      ||||||||||||||||||||||||| ||||| ||||||||||||||| ||
seq2  GAGACAGAGAGAGAGACAGAGAGACGGAGACGGAGAGAGAGAGAGAC-GA  949

seq1  GAGACAGAGAGAGACAGAGAGAGAGACAGAGAGACAGAGAGAGACAGAGA  1000
      ||||| ||||||||| ||||||||||| ||||||| ||||||||| ||||
seq2  GAGACTGAGAGAGACGGAGAGAGAGAC-GAGAGAC-GAGAGAGACGGAGA  997

seq1  GACAGAGAGAGACAGGTCATTAGAATCTCCAAGGAAACATTCC-ATAGGA  1049
      ||| ||| ||||| |||||||||||||| |||||||||||||| ||||||
seq2  GACCGAGTGAGACTGGTCATTAGAATCT-CAAGGAAACATTCCAATAGGA  1046

seq1  ACTTCTATTTTCAAGAGTTTTCAAGGTCCTAAGTTTTGCCATCTCCTGAT  1099
      |||  ||||||||||||||||||||||| || |||| ||||||||   ||
seq2  ACTCTTATTTTCAAGAGTTTTCAAGGTCTTAGGTTTGGCCATCTCTGAAT  1096

seq1  AGTCCATTAAATTAT-AAGTGCAT-CACTGGATTAATG-AATTAA  1141
      ||  || |||||||| |||||||| ||||||| ||||| ||||||
seq2  AGGTCA-TAAATTATAAAGTGCATCCACTGGA-TAATGAAATTAA  1139


| Home | SequenceCutter | Blast | Download |