BAC Information

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BAC

Clone NameB6Ng01-332E18
Chromosome3 (Build37)
Map Location 109,232,424 - 109,334,679
singlet/doubletdoublet
Overlap geneVav3
Upstream geneSars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
Downstream geneNtng1, LOC100043181, LOC100043183, Prmt6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332E18.bB6Ng01-332E18.g
ACCGA118437GA118438
length1,0691,145
definitionB6Ng01-332E18.b B6Ng01-332E18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,232,424 - 109,233,500)(109,333,524 - 109,334,679)
sequence
gaattcacatcaacacaaattctaattgaatctaattacagttggtgtca
tctgtcaaaagaaaggttgggaggctgcagaagccccagcataaagtggc
tgctgttcctaactctagtagacatatagtttgtgcatgggccagggcgg
agcttggtaacttgaactcttctgggaaacagtagagactctgagactga
caggtcactctggggttgttgcttgctgatccttctcttagggcaggatc
cttctctcaggcagaagccaacctgctctgtggggaagctccattgtcct
tttagatggcatacagagcttctctttggctttaagtttatattttgaag
tttatattttctatcttttcaaaatgacgaatccatttctggttttttgg
taacaacggtaagtaaaatctttttagttcctttgcttaaggtgtaaatt
ttcttaaaaagtgtttccccctttcagaataaacttagaagccccgtgtt
ccattatgatcagaccgttcatcaggagctggacatgtgcttgcttcatg
tcatgtggcatgtgtttgctattgctctagatgccattaactcaagattc
gattaactcaagctgttgggaaatgtttccttccatgttgtcagctggtg
tctctgcagtgtatgggaaggtggggtgcctgggaaggtggggtgcctgg
gaaggtggggttttcactaatgaggccatttgtggggcttggctgaggct
tccagcctggccagcagagtgatgaatgccatctctgctcctgcttccct
tgacccacagacgttgtgtccttgaatccggggactgtagagcaccttgc
ccatgttcggtgattgacacatttttcttgaagcaagagaaacacacctg
gccaaaggttgttacaatagcctgtagacaagttcaatgttgaggttcag
acagtgacatcagaggaatccagagagtcagtgtaaggggtgtgtcatga
accagtgagaacttggagagactaagttctattttgggtaggaacagggt
tctaagggggtcttgtctg
gaattccagaaagacaagacacagggtaaagctaaagacactgggaagag
cgggccccccacaggtacagaagcctgaccgcattttctagattgtcaca
ataccacacacttcttggctttctttgttttctatgacttagaaaagcag
aatgagtgaaaacaatgaacaaaatggaataaacctgacccttgggcaaa
atcttaagcattggcttttacccagatgattctacttcatgaagagcaag
ggaggacctgtcttagaaagctaatagcacggctctcagggcttcctggt
atagctagtttcaagaggaatagatgatgttaagatagtagctaggctga
taccttaactgagagtcctgcttttgattttgccctgcatgttttaactt
ttgcttacagactccccctcccgccaaggttcaactctgtgtaattttgc
agcaaggtctatctaccttctacctcttcaaataagcaggcaacagaact
ccaaaatacaaacatggctcctacttgtgcttcactgcattactggggtg
cttcaaaagtcttcaaagatgaggagtgtctggcccctgaaggtgtcggt
gcagaggagcaactcagttccgtctacaccctgtgtgcctgcaaacggta
aagctagctgcctgcctctccaaggccgcttctctcccttctctcgcagc
aagcttggcttaaacccatgtgactcaggaatgatcatctcagcctccct
tgtcatgtatagttaggtgtccaagttctgccctgatttaagaaaaatac
ttgttgtagaaggtccatcggaagagagagattaccttctcgccacctac
caggtagatcgtatagtcagaattccagcaaccatttatactttaaagta
agcaacaccgaagacagaagtcaaatgctgaggtcaggagatgagaacct
gagcctgaaagggagctgatgctcagcagccactactgaacagctctgct
acacagatgtgtttcacaatgcgagaggataagcacgcatcacttagctt
gtatagatgagctatatgacgtacgaaaatgtaacaaatgttcactgaat
ttgtctatgatgcagtctagactgcttcctctgaacaagaacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_109232424_109233500
seq2: B6Ng01-332E18.b_42_1110

seq1  GAATTCACATCAACACAAATTCTAATTGAATCTAATTACAGTTGGTGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATCAACACAAATTCTAATTGAATCTAATTACAGTTGGTGTCA  50

seq1  TCTGTCAAAAGAAAGGTTGGGAGGCTGCAGAAGCCCCAGCATAAAGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAAAGAAAGGTTGGGAGGCTGCAGAAGCCCCAGCATAAAGTGGC  100

seq1  TGCTGTTCCTAACTCTAGTAGACATATAGTTTGTGCATGGGCCAGGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTCCTAACTCTAGTAGACATATAGTTTGTGCATGGGCCAGGGCGG  150

seq1  AGCTTGGTAACTTGAACTCTTCTGGGAAACAGTAGAGACTCTGAGACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGTAACTTGAACTCTTCTGGGAAACAGTAGAGACTCTGAGACTGA  200

seq1  CAGGTCACTCTGGGGTTGTTGCTTGCTGATCCTTCTCTTAGGGCAGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCACTCTGGGGTTGTTGCTTGCTGATCCTTCTCTTAGGGCAGGATC  250

seq1  CTTCTCTCAGGCAGAAGCCAACCTGCTCTGTGGGGAAGCTCCATTGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCAGGCAGAAGCCAACCTGCTCTGTGGGGAAGCTCCATTGTCCT  300

seq1  TTTAGATGGCATACAGAGCTTCTCTTTGGCTTTAAGTTTATATTTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATGGCATACAGAGCTTCTCTTTGGCTTTAAGTTTATATTTTGAAG  350

seq1  TTTATATTTTCTATCTTTTCAAAATGACGAATCCATTTCTGGTTTTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTTCTATCTTTTCAAAATGACGAATCCATTTCTGGTTTTTTGG  400

seq1  TAACAACGGTAAGTAAAATCTTTTTAGTTCCTTTGCTTAAGGTGTAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACGGTAAGTAAAATCTTTTTAGTTCCTTTGCTTAAGGTGTAAATT  450

seq1  TTCTTAAAAAGTGTTTCCCCCTTTCAGAATAAACTTAGAAGCCCCGTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAAAGTGTTTCCCCCTTTCAGAATAAACTTAGAAGCCCCGTGTT  500

seq1  CCATTATGATCAGACCGTTCATCAGGAGCTGGACATGTGCTTGCTTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATGATCAGACCGTTCATCAGGAGCTGGACATGTGCTTGCTTCATG  550

seq1  TCATGTGGCATGTGTTTGCTATTGCTCTAGATGCCATTAACTCAAGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGCATGTGTTTGCTATTGCTCTAGATGCCATTAACTCAAGATTC  600

seq1  GATTAACTCAAGCTGTTGGGAAATGTTTCCTTCCATGTTGTCAGCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACTCAAGCTGTTGGGAAATGTTTCCTTCCATGTTGTCAGCTGGTG  650

seq1  TCTCTGCAGTGTATGGGAAGGTGGGGTGCCTGGGAAGGTGGGGTGCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAGTGTATGGGAAGGTGGGGTGCCTGGGAAGGTGGGGTGCCTGG  700

seq1  GAAGGTGGGGTTTTCACTAATGAGGCCATTTGTGGGGCTTGGCTGAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTGGGGTTTTCACTAATGAGGCCATTTGTGGGGCTTGGCTGAGGCT  750

seq1  TCCAGCCTGGCCAGCAGAGTGATGAATGCCATCTCTGCTCCTGCTTCCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCCTGGCCAGCAGAGTGATGAATGCCATCTCTGCTCCTGCTTCCCT  800

seq1  TGACCCACAGACGTTGTGTCCTTGAATCCGGGGACTGTAGAGCACCTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCACAGACGTTGTGTCCTTGAATCCGGGGACTGTAGAGCACCTTGC  850

seq1  CCATGTCCGGTGATTGACACA-TTTTCTTGAAGCAAAGAGAAACACACCT  899
      |||||| |||||||||||||| |||||||||||| |||||||||||||||
seq2  CCATGTTCGGTGATTGACACATTTTTCTTGAAGC-AAGAGAAACACACCT  899

seq1  GGCCAAAGGTTGTTACAATAGCCTGTAGGACAAGTTCAAATGTTGAGGTT  949
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  GGCCAAAGGTTGTTACAATAGCCTGTA-GACAAGTTC-AATGTTGAGGTT  947

seq1  CAGGACAGTGACATCAGAGGAATCCAGAGAGTCAGTGT-AGGGGTGTGTC  998
      || ||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CA-GACAGTGACATCAGAGGAATCCAGAGAGTCAGTGTAAGGGGTGTGTC  996

seq1  AATGAACCAGGTGAGAACTTGGAAGAGACTAAGTTCTATTTTGGGTAAGA  1048
       |||||||| |||||||||||| |||||||||||||||||||||||| ||
seq2  -ATGAACCA-GTGAGAACTTGG-AGAGACTAAGTTCTATTTTGGGTAGGA  1043

seq1  ACAGTGTTTCTAAGGTGGGTCTTGGTCTG  1077
      |||| | |||||||| ||||||| |||||
seq2  ACAG-GGTTCTAAGG-GGGTCTT-GTCTG  1069

seq1: chr3_109333524_109334679
seq2: B6Ng01-332E18.g_65_1209 (reverse)

seq1  AGTG-TCTTGTCTCAGAGGAAGCAGGGTCCTAGGACTGCATCATAGACAT  49
      |||| |||||| |||||||||||||    ||| |||||||||||||||| 
seq2  AGTGTTCTTGT-TCAGAGGAAGCAG---TCTA-GACTGCATCATAGACAA  45

seq1  A-TCAGTGACCATTTTGTTACATTTTCGTACGTCATATAGCTCATCCTTA  98
      | ||||||| || |||||||||||||||||||||||||||||||||    
seq2  ATTCAGTGAACA-TTTGTTACATTTTCGTACGTCATATAGCTCATC---T  91

seq1  ATACAAGCTAAGTGATGCGTGCTTATCCTCTCGCA-TGTGAAACACATCT  147
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATACAAGCTAAGTGATGCGTGCTTATCCTCTCGCATTGTGAAACACATCT  141

seq1  GTGGTAGGCAGAGGCTGTTCAGTAGGTGGCTGCCTGAGCATCAGCTCCCT  197
      || ||| ||||| ||||||||||| ||||||| |||||||||||||||||
seq2  GT-GTA-GCAGA-GCTGTTCAGTA-GTGGCTG-CTGAGCATCAGCTCCCT  186

seq1  TTCAGGCTCAGGTTCTCATCTCCTGACCTCAGCATTTGACTTCTGTCTTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGCTCAGGTTCTCATCTCCTGACCTCAGCATTTGACTTCTGTCTTC  236

seq1  GGTGTTGCTTACTTTAAAGTATAAATGGTTGCTGGAATTCTGACTATACG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTGCTTACTTTAAAGTATAAATGGTTGCTGGAATTCTGACTATACG  286

seq1  ATCTACCTGGTAGGTGGCGAGAAGGTAATCTCTCTCTTCCGATGGACCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACCTGGTAGGTGGCGAGAAGGTAATCTCTCTCTTCCGATGGACCTT  336

seq1  CTACAACAAGTATTTTTCTTAAATCAGGGCAGAACTTGGACACCTAACTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAACAAGTATTTTTCTTAAATCAGGGCAGAACTTGGACACCTAACTA  386

seq1  TACATGACAAGGGAGGCTGAGATGATCATTCCTGAGTCACATGGGTTTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACAAGGGAGGCTGAGATGATCATTCCTGAGTCACATGGGTTTAA  436

seq1  GCCAAGCTTGCTGCGAGAGAAGGGAGAGAAGCGGCCTTGGAGAGGCAGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGCTTGCTGCGAGAGAAGGGAGAGAAGCGGCCTTGGAGAGGCAGGC  486

seq1  AGCTAGCTTTACCGTTTGCAGGCACACAGGGTGTAGACGGAACTGAGTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCTTTACCGTTTGCAGGCACACAGGGTGTAGACGGAACTGAGTTG  536

seq1  CTCCTCTGCACCGACACCTTCAGGGGCCAGACACTCCTCATCTTTGAAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTGCACCGACACCTTCAGGGGCCAGACACTCCTCATCTTTGAAGA  586

seq1  CTTTTGAAGCACCCCAGTAATGCAGTGAAGCACAAGTAGGAGCCATGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAGCACCCCAGTAATGCAGTGAAGCACAAGTAGGAGCCATGTTT  636

seq1  GTATTTTGGAGTTCTGTTGCCTGCTTATTTGAAGAGGTAGAAGGTAGATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTGGAGTTCTGTTGCCTGCTTATTTGAAGAGGTAGAAGGTAGATA  686

seq1  GACCTTGCTGCAAAATTACACAGAGTTGAACCTTGGCGGGAGGGGGAGTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTGCTGCAAAATTACACAGAGTTGAACCTTGGCGGGAGGGGGAGTC  736

seq1  TGTAAGCAAAAGTTAAAACATGCAGGGCAAAATCAAAAGCAGGACTCTCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCAAAAGTTAAAACATGCAGGGCAAAATCAAAAGCAGGACTCTCA  786

seq1  GTTAAGGTATCAGCCTAGCTACTATCTTAACATCATCTATTCCTCTTGAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGGTATCAGCCTAGCTACTATCTTAACATCATCTATTCCTCTTGAA  836

seq1  ACTAGCTATACCAGGAAGCCCTGAGAGCCGTGCTATTAGCTTTCTAAGAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTATACCAGGAAGCCCTGAGAGCCGTGCTATTAGCTTTCTAAGAC  886

seq1  AGGTCCTCCCTTGCTCTTCATGAAGTAGAATCATCTGGGTAAAAGCCAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTCCCTTGCTCTTCATGAAGTAGAATCATCTGGGTAAAAGCCAAT  936

seq1  GCTTAAGATTTTGCCCAAGGGTCAGGTTTATTCCATTTTGTTCATTGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAGATTTTGCCCAAGGGTCAGGTTTATTCCATTTTGTTCATTGTTT  986

seq1  TCACTCATTCTGCTTTTCTAAGTCATAGAAAACAAAGAAAGCCAAGAAGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATTCTGCTTTTCTAAGTCATAGAAAACAAAGAAAGCCAAGAAGT  1036

seq1  GTGTGGTATTGTGACAATCTAGAAAATGCGGTCAGGCTTCTGTACCTGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTATTGTGACAATCTAGAAAATGCGGTCAGGCTTCTGTACCTGTG  1086

seq1  GGGGGCCCGCTCTTCCCAGTGTCTTTAGCTTTACCCTGTGTCTTGTCTTT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCCGCTCTTCCCAGTGTCTTTAGCTTTACCCTGTGTCTTGTCTTT  1136

seq1  CTGGAATTC  1156
      |||||||||
seq2  CTGGAATTC  1145