BAC Information

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BAC

Clone NameB6Ng01-332F24
Chromosome3 (Build37)
Map Location 94,080,945 - 94,205,433
singlet/doubletdoublet
Overlap geneThem4, Them5, Gm659, Rorc, Lingo4
Upstream geneEG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727
Downstream geneTdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332F24.bB6Ng01-332F24.g
ACCGA118495GA118496
length118810
definitionB6Ng01-332F24.b B6Ng01-332F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,080,945 - 94,081,062)(94,204,624 - 94,205,433)
sequence
catcccaaattcccgtcattttcactgatgcaacaatgtttctcagaact
ccttccaggattctaacatggagaatggaaagttgttgtttgttgattgg
ttggtttttggggggtgg
gaattcctcaggacccatctccctgacatctgctttctacaaactctgct
atgtccctcttaccccattcttattctcccatatgttgtgcctacaactt
tacccaaggatcagggagatcccatccagacttgagagagcttctgaccc
tgggctgactgggaaaaggttcttagtttgaccaaatcatcagaagctaa
gaaacatgcaggcttcagctctgctctagtctctgccctctttccgcctg
gcccaaggcccagagtagccaatttggtgtcccaaactgtttgtgtggat
ggtaagcctggctgtatattattcatggaacagagtgcaggggcactgga
ggatgggattgggatcctttaccagagccccaaggacagcacctcttccc
ttatagatggggttgagatgtggaagatatctaaagggtactcaaatact
tcacggggtcctcagccttgagcttcccgtacatccttccttaatggtgt
tttgattctagttagtatgtgcttctgagggagagcttccacccctttcc
acccgagctgcctgagaagacacaagaaatggcttgtgagccaaggaagc
atggataaagggggagaaacagcccatgacctgatgccttgcgtgggagg
aagggagccactgggtagcacagtgggcacccggatacaagcacagcacc
tatcagtataaagtgagcaacagaagcctggggcagcatcaggagatgat
gaccatgatgactgtcggaagctgatatggtgatagagttgaaggcatct
ttagtcttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94080945_94081062
seq2: B6Ng01-332F24.b_49_166

seq1  CATCCCAAATTCCCGTCATTTTCACTGATGCAACAATGTTTCTCAGAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAAATTCCCGTCATTTTCACTGATGCAACAATGTTTCTCAGAACT  50

seq1  CCTTCCAGGATTCTAACATGGAGAATGGAAAGTTGTTGTTTGTTGATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCAGGATTCTAACATGGAGAATGGAAAGTTGTTGTTTGTTGATTGG  100

seq1  TTGGTTTTTGGGGGGTGG  118
      ||||||||||||||||||
seq2  TTGGTTTTTGGGGGGTGG  118

seq1: chr3_94204624_94205433
seq2: B6Ng01-332F24.g_68_877 (reverse)

seq1  TCAAGACTAAAGATGCCTCCATCTCTATCACCATGTCCAGCCTCCGACAG  50
      |||||||||||||||||| || |||||||||||| | |||| ||||||||
seq2  TCAAGACTAAAGATGCCTTCAACTCTATCACCATAT-CAGCTTCCGACAG  49

seq1  TCATCATGGTCATCATCTCCTGATGCTG-CCCAGGCTTCTGGTGCTCACT  99
      |||||||||||||||||||||||||||| |||||||||||| ||||||||
seq2  TCATCATGGTCATCATCTCCTGATGCTGCCCCAGGCTTCTGTTGCTCACT  99

seq1  TTATACTGATGGGTGCTGTGCTTGTATCCGGGTGCCCACTGTGCTACCCA  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTATACTGATAGGTGCTGTGCTTGTATCCGGGTGCCCACTGTGCTACCCA  149

seq1  GTGGCTCCCTTCCTCCCACGCAAGGCATCAGGTCATGGGCTGTTTCTCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCCCTTCCTCCCACGCAAGGCATCAGGTCATGGGCTGTTTCTCCC  199

seq1  CCTTTATCCATGCTTCCTTGGCTCACAAGCCATTTCTTGTGTCTTCTCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCCATGCTTCCTTGGCTCACAAGCCATTTCTTGTGTCTTCTCAG  249

seq1  GCAGCTCGGGTGGAAAGGGGTGGAAGCTCTCCCTCAGAAGCACATACTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCGGGTGGAAAGGGGTGGAAGCTCTCCCTCAGAAGCACATACTAA  299

seq1  CTAGAATCAAAACACCATTAAGGAAGGATGTACGGGAAGCTCAAGGCTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATCAAAACACCATTAAGGAAGGATGTACGGGAAGCTCAAGGCTGA  349

seq1  GGACCCCGTGAAGTATTTGAGTACCCTTTAGATATCTTCCACATCTCAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCCGTGAAGTATTTGAGTACCCTTTAGATATCTTCCACATCTCAAC  399

seq1  CCCATCTATAAGGGAAGAGGTGCTGTCCTTGGGGCTCTGGTAAAGGATCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTATAAGGGAAGAGGTGCTGTCCTTGGGGCTCTGGTAAAGGATCC  449

seq1  CAATCCCATCCTCCAGTGCCCCTGCACTCTGTTCCATGAATAATATACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCATCCTCCAGTGCCCCTGCACTCTGTTCCATGAATAATATACAG  499

seq1  CCAGGCTTACCATCCACACAAACAGTTTGGGACACCAAATTGGCTACTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTACCATCCACACAAACAGTTTGGGACACCAAATTGGCTACTCT  549

seq1  GGGCCTTGGGCCAGGCGGAAAGAGGGCAGAGACTAGAGCAGAGCTGAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGGGCCAGGCGGAAAGAGGGCAGAGACTAGAGCAGAGCTGAAGC  599

seq1  CTGCATGTTTCTTAGCTTCTGATGATTTGGTCAAACTAAGAACCTTTTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTTTCTTAGCTTCTGATGATTTGGTCAAACTAAGAACCTTTTCC  649

seq1  CAGTCAGCCCAGGGTCAGAAGCTCTCTCAAGTCTGGATGGGATCTCCCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCCCAGGGTCAGAAGCTCTCTCAAGTCTGGATGGGATCTCCCTG  699

seq1  ATCCTTGGGTAAAGTTGTAGGCACAACATATGGGAGAATAAGAATGGGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGGGTAAAGTTGTAGGCACAACATATGGGAGAATAAGAATGGGGT  749

seq1  AAGAGGGACATAGCAGAGTTTGTAGAAAGCAGATGTCAGGGAGATGGGTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGACATAGCAGAGTTTGTAGAAAGCAGATGTCAGGGAGATGGGTC  799

seq1  CTGAGGAATTC  810
      |||||||||||
seq2  CTGAGGAATTC  810