BAC Information

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BAC

Clone NameB6Ng01-332M03
Chromosome3 (Build37)
Map Location 65,412,404 - 65,413,655
singlet/doubletsinglet
Overlap genenone
Upstream gene4930518C23Rik, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp
Downstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332M03.bB6Ng01-332M03.g
ACCGA118768GA118769
length1,2311,213
definitionB6Ng01-332M03.b B6Ng01-332M03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgcagactagtgcaagggagatctgttctcctgacagcagcca
gctgccctgactgagcattcctgtttgattttccaatgcctaacatcact
tttaaagtgctgagatggccaaatatgggctgccctgatgagggacctct
gtctctccttcaaaacaatccctcccagtcagttaaactggattctgacg
gtactggctcctagccaatgagccagcagagaagagcacttgctaccttt
gaacatcactctcctcagagacatctactggggtggtcgcgtcagttttt
cccttctgcctcccttttcggtagtaatggagtctttactctcatcactt
tctcacaaaaccctgtcagatgcaaggatgctgaatgccaaatcggcaga
ggcccgagatttgcgtcctaaggagaatgtctaaatagagggatgggttc
taaccagctgcgtgttattttagagagctcatttagagggccagcctaaa
tgaaagaaagtgaagcatgggggtatgaatgccctttctgctgctaaacc
gtgggtagaccttaaggagctggggagacagtggttcttttattatctgc
aaactgagcccaaggcatgtgtgaaagtctagaatctccacttaaagtaa
atattccttaactcccaacttaaacaacaacaacaatataaaatgaaaat
caaccttgatgagctggaagaagggcggtgtctaagccaggtctgtaggt
cagtttgattgggctcagacccctttgcatgttttgagagatttatttcc
aagctcgatattgacaaagattgtaaaatgtgttcaacttgggttccaca
cagatttacaggtcagagaatatatgaaccataattaataaaataaaaaa
gattctgtgaggtgtcatagcagttaacttcttcatttgttttttaacag
agtattgggatggatatgacatgaaagtaggaggggagaccattagggga
aagaagaggccaggaagagcatgaagaggagtcctcaggagacggagaag
agagacagtgacagagaacaggacgaaaatgccatccatgaaattcacca
aatgccacttaaagtagaggaaaaggttttttttttttttatcatgtttt
gccttggactgttcttttaagctcactggccttgattcctatgacaagga
cctgtaattccgatcttctgattctacctcc

gaattcactggcacaggaaaagactttctgaacagaccaccagtagcaca
ggcactaatataaaccactaatagatgagacctcatgaaactgaaaagca
ttggtatggtaaagacaccatcattcgaacaaagtgtcagtctacagaaa
aaaagatttttacaaattatacatccaatagaggtttagtatctgaacta
taacaagaactaaaaccaaccaaacaaaaaacactgaacaacaagaaaat
aaataaccctgctaaaagtagattagagattaagtagagagttttcaaaa
aatgaaacacacatggcaaagaaacattaaacatgtattcaagatctttg
ccatcaaagaaataaaagtaacagctactttgaaatttcatcaatttaca
ccaatcagaatggacacaatctataaaacaaataacagctcatgctggtg
aggctatggggtacaggaacaatcatccaatgctggtgagattgcaaaca
tgtgcaaccacaatgaaaatcagggtggctgtttctcaggaagctgggaa
ttcatcttcctcaagatcaaactactcttgggcatatacccaaataattt
ctcagtcagccacagaaaggcctgctcatccatgttcactgtggctctat
tcataatatccaggaattagtgacagctttgatttcgatgaaccactaaa
tggatagtgaaacgtggtacatttacacaatcgaatattattcagctatt
aaaatataatgaaatttgcaggtaaatggataaagctagaaaaaagtcac
agtgagtgtcttagtcagggtttcttttcctgcacaaacatcatgaccaa
gaagcaagttggggaggaaagggtttattcagcttacaagtcctcattgc
tgttcatcaccaaaggatgtcagactggaactcaagcagtcaaggaagca
ggagctaatgcagaggccatggaaggattgttacttactggcttgctcct
ctggcttgctcagcttgctttctatagaccaagacccccaggccaggatg
gcaacaccacaatgggctggcccttcctccccatgatcataaattgagaa
atgccttacgctggatctcatgagccatttctcaacttgagctcttcatg
tgatacttcgactagtcagtgtgacactcacaactctatgtgagtagagt
aacgacagcgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65412404_65413655
seq2: B6Ng01-332M03.b_49_1279

seq1  GAATTCATGCAGACTAGTGCAAGGGAGATCTGTTCTCCTGACAGCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCAGACTAGTGCAAGGGAGATCTGTTCTCCTGACAGCAGCCA  50

seq1  GCTGCCCTGACTGAGCATTCCTGTTTGATTTTCCAATGCCTAACATCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCTGACTGAGCATTCCTGTTTGATTTTCCAATGCCTAACATCACT  100

seq1  TTTAAAGTGCTGAGATGGCCAAATATGGGCTGCCCTGATGAGGGACCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGTGCTGAGATGGCCAAATATGGGCTGCCCTGATGAGGGACCTCT  150

seq1  GTCTCTCCTTCAAAACAATCCCTCCCAGTCAGTTAAACTGGATTCTGACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCTTCAAAACAATCCCTCCCAGTCAGTTAAACTGGATTCTGACG  200

seq1  GTACTGGCTCCTAGCCAATGAGCCAGCAGAGAAGAGCACTTGCTACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGCTCCTAGCCAATGAGCCAGCAGAGAAGAGCACTTGCTACCTTT  250

seq1  GAACATCACTCTCCTCAGAGACATCTACTGGGGTGGTCGCGTCAGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCACTCTCCTCAGAGACATCTACTGGGGTGGTCGCGTCAGTTTTT  300

seq1  CCCTTCTGCCTCCCTTTTCGGTAGTAATGGAGTCTTTACTCTCATCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCCTCCCTTTTCGGTAGTAATGGAGTCTTTACTCTCATCACTT  350

seq1  TCTCACAAAACCCTGTCAGATGCAAGGATGCTGAATGCCAAATCGGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAAAACCCTGTCAGATGCAAGGATGCTGAATGCCAAATCGGCAGA  400

seq1  GGCCCGAGATTTGCGTCCTAAGGAGAATGTCTAAATAGAGGGATGGGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCGAGATTTGCGTCCTAAGGAGAATGTCTAAATAGAGGGATGGGTTC  450

seq1  TAACCAGCTGCGTGTTATTTTAGAGAGCTCATTTAGAGGGCCAGCCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGCTGCGTGTTATTTTAGAGAGCTCATTTAGAGGGCCAGCCTAAA  500

seq1  TGAAAGAAAGTGAAGCATGGGGGTATGAATGCCCTTTCTGCTGCTAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAAAGTGAAGCATGGGGGTATGAATGCCCTTTCTGCTGCTAAACC  550

seq1  GTGGGTAGACCTTAAGGAGCTGGGGAGACAGTGGTTCTTTTATTATCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGACCTTAAGGAGCTGGGGAGACAGTGGTTCTTTTATTATCTGC  600

seq1  AAACTGAGCCCAAGGCATGTGTGAAAGTCTAGAATCTCCACTTAAAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGCCCAAGGCATGTGTGAAAGTCTAGAATCTCCACTTAAAGTAA  650

seq1  ATATTCCTTAACTCCCAACTTAAACAACAACAACAATATAAAATGAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCTTAACTCCCAACTTAAACAACAACAACAATATAAAATGAAAAT  700

seq1  CAACCTTGATGAGCTGGAAGAAGGGCGGTGTCTAAGCCAGGTCTGTAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGATGAGCTGGAAGAAGGGCGGTGTCTAAGCCAGGTCTGTAGGT  750

seq1  CAGTTTGATTGGGCTCAGACCCCTTTGCATGTTTTGAGAGATTTATTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGATTGGGCTCAGACCCCTTTGCATGTTTTGAGAGATTTATTTCC  800

seq1  AAGCTCGATATTGACAAAGATTGTAAAATGTGTTCAACTTGGGTTCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGATATTGACAAAGATTGTAAAATGTGTTCAACTTGGGTTCCACA  850

seq1  CAGATTTACAGGTCAGAGAATATATGAACCATAATTAATAAAATAAAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGATTTACAGGTCAGAGAATATATGAACCATAATTAATAAAAT-AAAAA  899

seq1  AGATTCTGTGAGGTGTCATAGCAGTTAACTTCTTCATTTGTTTTTTTAAC  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGATTCTGTGAGGTGTCATAGCAGTTAACTTCTTCATTTG-TTTTTTAAC  948

seq1  AGAGTATTGGGATGGATATGACATGAAAGTAGGAGGGGAGACCATTAGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATTGGGATGGATATGACATGAAAGTAGGAGGGGAGACCATTAGGG  998

seq1  GAAAGAAGAGGCCAGGAAGAGCATGAAGA-GAGTCCTCAGGAGACGGAG-  1048
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  GAAAGAAGAGGCCAGGAAGAGCATGAAGAGGAGTCCTCAGGAGACGGAGA  1048

seq1  AGAGAGACAAGTGACAGAG-ACA-GACGAAAATGCCAT-CATGAAA-TCA  1094
      |||||||| |||||||||| ||| |||||||||||||| ||||||| |||
seq2  AGAGAGAC-AGTGACAGAGAACAGGACGAAAATGCCATCCATGAAATTCA  1097

seq1  CCAAATGCCAACTTAAAGTAAGAGGAAAAATGTTTTTTTTTTTTTTTTTA  1144
      ||||||||| ||||||||| |||||||||  | ||||||||||||||   
seq2  CCAAATGCC-ACTTAAAGT-AGAGGAAAA--GGTTTTTTTTTTTTTT---  1140

seq1  ATCATTTGTTTTTGCCTTGTGACTTGTTCTTTTATAGCTCAGCTGGCTTT  1194
      |||||    |||||||||| ||| |||||||||| |||||| ||||| ||
seq2  ATCAT---GTTTTGCCTTG-GAC-TGTTCTTTTA-AGCTCA-CTGGCCTT  1183

seq1  GAATTCCTTATGTACCAAAGGAAGACCTTGAATTCCAGATCTTCCTGATT  1244
      | ||||| |||| ||  |||   |||||  |||||| |||||| ||||||
seq2  G-ATTCC-TATG-AC--AAG---GACCTGTAATTCC-GATCTT-CTGATT  1223

seq1  CTACCTCC  1252
      ||||||||
seq2  CTACCTCC  1231


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