BAC Information

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BAC

Clone NameB6Ng01-333A19
Chromosome3 (Build37)
Map Location 136,023,519 - 136,142,306
singlet/doubletdoublet
Overlap genenone
Upstream gene4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
Downstream genePpp3ca, LOC668870, LOC100039447, Emcn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333A19.bB6Ng01-333A19.g
ACCGA118972GA118973
length1,109850
definitionB6Ng01-333A19.b B6Ng01-333A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(136,023,519 - 136,024,633)(136,141,561 - 136,142,306)
sequence
gaattcacctgtctttgcttcacactcacctagctctggcaatacacatt
ttttagtttatttttcatttatttgaaaggctctcaactatatagtaacc
tggctaaactggaactcactatgttaatcatgcttgcttcaaactcacag
agttccacctgcctctcccactacaccttgctacttataaaatattctat
ttactttttatatggttttgcatctctgtgtgcagatctgggtattcact
gggtccaaaagagggtaggagatctcttggagcttctaggcaattgtgag
ctcctggtgtggatactgagaaccaaaatgaactccctggaatagtaaca
gttgctcctgaaacactgaggtgccattcagctcctccatacaccattca
ttatgcaggtttccatcaaggtttaaatagaatgaactaatagactaatg
aatatccctgatggaaaaggaggtagtatcatttaaaactataggcacat
cccttgcttaaggcaaaaatgatgctttttgtcacatgtggggcgactcc
agctttggctgaaaaacactgtgaaatattgtaaacaaatataaaagttg
ttgggaatattgagctatctgggtgttataaagtgagcattaaaaactaa
aaaaaaaaaaaaactagtaacaacaattaatgaaaaagaggccatggatt
tgaaagagagaaaggaggggtacatgggagggttggaaagagagaattat
aatctcaaaaaaaaattaaaccaaaagagaataaaacaagacaaagcaac
agcaaactggttcactcccgcacacagcccaagctttccttggggggttc
agggtagcacaacctatgctcactttatctgacattagagttgtactcca
aggacttgtctttccaaattctagttatgtagaataatcttaggggaaat
gtctacacttcaaattaaatggatctaagctggacctcagcatcagaaat
ttgacattgcaaaaaactacaacttcagtattttttttttctcatacgtc
atctgagtgagtcactcagactcaaggatatgtatggtggtactccctgg
cgagtggat
gaattcctgttaggttggatgcatagtgtgaggaaaacagaatgagaaga
aatagtaacccttttttaattcagtgaatattgggaaacactaataggag
gttaactgtggtggatggagagttggggtgcatggctttgtttggtcatg
gagggtctgcgtctgtggccaaacatcaaaggatttttctgaaatgtctg
ttttggagtaaaagggacagcaattgatggataagtacacataaatacaa
ggcaagaaagaaatgagagaaatgagaacacgtgggagaaatgagaacat
ttttcaattctcttctcatgaaaaacaactgtatcttcttccgtatcttc
tttcggtgctcagtatcatggcaaaaaccaagaacattcattggcacact
ccaagaaagccaagtcctgcctttatttgagagctggtcatgaaaatagc
aggtcattaagtgcttgaattcctgacataggtttaaagtttggcttaat
cacttgaatctccaatattcacccagtaaacatgccagagacaagctctc
aaaggagacagctataccaggctcctgtcagcaagcacggttggcatcca
caataatgtctgcatttagtaaatgtatatgggatggatccccacgtggg
gcagtcctgggactgtcattctttcaggctctgctccacactttgtctct
gtaactccttccatggttattttgttcccccttctaagaaggatcaaagt
atctgcactttggtcttccttcttcttgagtttcatgtggtttgtggatt
gtatttttggtattctgagcttctaggctaatattccaattatcagtgag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_136023519_136024633
seq2: B6Ng01-333A19.b_44_1152

seq1  GAATTCACCTGTCTTTGCTTCACACTCACCTAGCTCTGGCAATACACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGTCTTTGCTTCACACTCACCTAGCTCTGGCAATACACATT  50

seq1  TTTTAGTTTATTTTTCATTTATTTGAAAGGCTCTCAACTATATAGTAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTATTTTTCATTTATTTGAAAGGCTCTCAACTATATAGTAACC  100

seq1  TGGCTAAACTGGAACTCAGTATGTTAATCATGCTTGCTTCAAACTCACAG  150
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGCTAAACTGGAACTCACTATGTTAATCATGCTTGCTTCAAACTCACAG  150

seq1  AGTTCCACCTGCCTCTCCCACTACACCTTGCTACTTATAAAATATTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACCTGCCTCTCCCACTACACCTTGCTACTTATAAAATATTCTAT  200

seq1  TTACTTTTTATATGGTTTTGCATCTCTGTGTGCAGATCTGGGTATTCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTTATATGGTTTTGCATCTCTGTGTGCAGATCTGGGTATTCACT  250

seq1  GGGTCCAAAAGAGGGTAGGAGATCTCTTGGAGCTTCTAGGCAATTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAAAAGAGGGTAGGAGATCTCTTGGAGCTTCTAGGCAATTGTGAG  300

seq1  CTCCTGGTGTGGATACTGAGAACCAAAATGAACTCCCTGGAATAGTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CTCCTGGTGTGGATACTGAGAACCAAAATGAACTCCCTGGAATAGTAACA  350

seq1  GTTGCTCCTGAAACACTGAGGTGCCATTCAGCTCCTCCATACACCATTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCCTGAAACACTGAGGTGCCATTCAGCTCCTCCATACACCATTCA  400

seq1  TTATGCAGGTTTCCATCAAGGTTTAAATAGAATGAACTAATAGACTAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAGGTTTCCATCAAGGTTTAAATAGAATGAACTAATAGACTAATG  450

seq1  AATATCCCTGATGGAAAAGGAGGTAGTATCATTTAAAACTATAGGCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCTGATGGAAAAGGAGGTAGTATCATTTAAAACTATAGGCACAT  500

seq1  CCCTTGCTTAAGGCAAAAATGATGCTTTTTGTCACATGTGGGGCGACTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTTAAGGCAAAAATGATGCTTTTTGTCACATGTGGGGCGACTCC  550

seq1  AGCTTTGGCTGAAAAACACTGTGAAATATTGTAAACAAATATAAAAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGGCTGAAAAACACTGTGAAATATTGTAAACAAATATAAAAGTTG  600

seq1  TTGGGAATATTGAGCTATCTGGGTGTTATAAAGTGAGCATTAAAAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATATTGAGCTATCTGGGTGTTATAAAGTGAGCATTAAAAACTAA  650

seq1  AAAAAAAAAAAAACTAGTAACAACAATTAATGAAAAAGAGGCCATGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAACTAGTAACAACAATTAATGAAAAAGAGGCCATGGATT  700

seq1  TGAAAGAGAGAAAGGAGGGGTACATGGGAGGGTTGGAAAGAGAGAATTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGAGAAAGGAGGGGTACATGGGAGGGTTGGAAAGAGAGAATTAT  750

seq1  AATCTCAAAAAAAAATTAAACCAAAAGAGAATAAAACAAGACAAAGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAAAAAAAAATTAAACCAAAAGAGAATAAAACAAGACAAAGCAAC  800

seq1  AGCAAACTGGTTCACTCCCGCACACAGCCCAAGCTTTCCTTGGGGGGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTGGTTCACTCCCGCACACAGCCCAAGCTTTCCTTGGGGGGTTC  850

seq1  AGGGTAGCACAACCTATGCTCACTTTATCTGACATTAGAGTTGTACTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGCACAACCTATGCTCACTTTATCTGACATTAGAGTTGTACTCCA  900

seq1  AGGACTTGTCTTTCCAAATTCTAGTTATGTAGAATAATCTTAGGGGAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGGACTTGTCTTTCCAAATTCTAGTTATGTAGAATAATCTTAGGGG-AAA  949

seq1  TGTCTACACTTCAAAATTAAATGGATCTAAGCTGGACCTAAGCACCAGAA  1000
      |||||||||||| |||||||||||||||||||||||||| |||| |||||
seq2  TGTCTACACTTC-AAATTAAATGGATCTAAGCTGGACCTCAGCATCAGAA  998

seq1  ATTTGACATTTGAAAAAAACTAAAACTTCAGTA-TTTTTTTTTCTCATAG  1049
      |||||||| ||| ||||||||| |||||||||| ||||||||||||||| 
seq2  ATTTGACA-TTGCAAAAAACTACAACTTCAGTATTTTTTTTTTCTCATAC  1047

seq1  GTCATCCTGAGTGAGGTAACTCAGACCCAAAGGATATGAATGGTGTGTAC  1099
      ||||| |||||||| || |||||||| | ||||||||| |||||| ||||
seq2  GTCAT-CTGAGTGA-GTCACTCAGACTC-AAGGATATGTATGGTG-GTAC  1093

seq1  TCACTGGCAAGTGGAT  1115
      || ||||| |||||||
seq2  TCCCTGGCGAGTGGAT  1109

seq1: chr3_136141561_136142306
seq2: B6Ng01-333A19.g_65_810 (reverse)

seq1  TGATCCTTCTTAGAAGGGGGAACAAAATAACCATGGAAGGAGTTACAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTTCTTAGAAGGGGGAACAAAATAACCATGGAAGGAGTTACAGAG  50

seq1  ACAAAGTGTGGAGCAGAGCCTGAAAGAATGACAGTCCCAGGACTGCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGTGGAGCAGAGCCTGAAAGAATGACAGTCCCAGGACTGCCCCA  100

seq1  CGTGGGGATCCATCCCATATACATTTACTAAATGCAGACATTATTGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGATCCATCCCATATACATTTACTAAATGCAGACATTATTGTGGA  150

seq1  TGCCAACCGTGCTTGCTGACAGGAGCCTGGTATAGCTGTCTCCTTTGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACCGTGCTTGCTGACAGGAGCCTGGTATAGCTGTCTCCTTTGAGA  200

seq1  GCTTGTCTCTGGCATGTTTACTGGGTGAATATTGGAGATTCAAGTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTCTGGCATGTTTACTGGGTGAATATTGGAGATTCAAGTGATTA  250

seq1  AGCCAAACTTTAAACCTATGTCAGGAATTCAAGCACTTAATGACCTGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAACTTTAAACCTATGTCAGGAATTCAAGCACTTAATGACCTGCTA  300

seq1  CTTTCATGACCAGCTCTCAAATAAAGGCAGGACTTGGCTTTCTTGGAGTG  350
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGACCAGCTCTCAAATAAAGGCAGGACTTGGCTTTCTTGGAGTG  350

seq1  TGCCAATGAATGTTCTTGGTTTCTGCCATGATACTGAGCACCGAAAGAAG  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TGCCAATGAATGTTCTTGGTTTTTGCCATGATACTGAGCACCGAAAGAAG  400

seq1  ATACGGAAGAAGATACAGTTGTTTTTCATGAGAAGAGAATTGAAAAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGGAAGAAGATACAGTTGTTTTTCATGAGAAGAGAATTGAAAAATGT  450

seq1  TCTCATTTCTCCCACGTGTTCTCATTTCTCTCATTTCTTTCTTGCCTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCTCCCACGTGTTCTCATTTCTCTCATTTCTTTCTTGCCTTGT  500

seq1  ATTTATGTGTACTTATCCATCAATTGCTGTCCCTTTTACTCCAAAACAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGTGTACTTATCCATCAATTGCTGTCCCTTTTACTCCAAAACAGA  550

seq1  CATTTCAGAAAAATCCTTTGATGTTTGGCCACAGACGCAGACCCTCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAGAAAAATCCTTTGATGTTTGGCCACAGACGCAGACCCTCCATG  600

seq1  ACCAAACAAAGCCATGCACCCCAACTCTCCATCCACCACAGTTAACCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAAAGCCATGCACCCCAACTCTCCATCCACCACAGTTAACCTCC  650

seq1  TATTAGTGTTTCCCAATATTCACTGAATTAAAAAAGGGTTACTATTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTGTTTCCCAATATTCACTGAATTAAAAAAGGGTTACTATTTCTT  700

seq1  CTCATTCTGTTTTCCTCACACTATGCATCCAACCTAACAGGAATTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTGTTTTCCTCACACTATGCATCCAACCTAACAGGAATTC  746