BAC Information

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BAC

Clone NameB6Ng01-333H24
Chromosome3 (Build37)
Map Location 110,589,355 - 110,667,288
singlet/doubletdoublet
Overlap genenone
Upstream geneNtng1, LOC100043181, LOC100043183, Prmt6
Downstream geneLOC100043190, LOC668712
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333H24.bB6Ng01-333H24.g
ACCGA119284GA119285
length1,213392
definitionB6Ng01-333H24.b B6Ng01-333H24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,666,056 - 110,667,288)(110,589,355 - 110,589,737)
sequence
gaattctttcacatcataaaccttcattttaagctcaggtaaatattcaa
aaaagggaattatatacatcagaatttattctagtcatgaaatcatcaat
aattgttataatttgaaaaaagtttacttttaatgtcagaaaaacctttc
tcaatcttaataatattgtttattaagcataaaattttcatattatttta
gagttaaatccaattaatgtttaataactatgctgagttttacaaaagag
ttaatccttgagttacactttgaaaattcttcactgttctttatagtcag
ttaaatttttgcaataattccaagttttttctaactataagtggcttaat
atgtgaaaaataacaagtaaatattgttcctaatttaaagactcagatag
tctacacaaaccttaactctgagtttctaatgctctgagatcatcaggta
acatgtgaaggtgttttataaaggcaataaatatacctgaatagggacag
aagatatgatttttgtactcttttaaaaggggtggtcataaaagtggtta
gaacaaagaactgaaatgttagagaattcctaaaagccacagcagttaga
atattagcaccttatgaactgatacttgcttctaaaagtttgcaagccct
agataacagagggtctatagccaactgtcagttctgtcttggtgttctct
actggtggagcagatgaagactataagcagagcagcagtatcatacttgt
acctcaactagtcccacagagagcaatatccatctaacattagggaagga
aaaagaatttcagctttccccaagccatgggccattgttttgataaaagt
aatcagaataaaaattatctgctaggagacttagctactccagagaaagt
gagagaggaaagaaatcttcggcttctgtgggacagtgtgcaagccccct
tatctgaggacttgtcaccgcaccagtgcatgcagggattatgggtgaaa
tgcaaggcatatagaaatatgaaacacatgatagagaaatgccagaaacc
ccacatcttagaaaagtgagtagagatcacctcttgttcactcctcctga
ctgtacagagtgatagcaaagcagtttgatactggagaattgtgaatgaa
aggatgaatgaatgtgcatgcatactatgctgctcatccataacccgggc
ctaccccttattc

aagcagagaagaagcagttgctagcaatttgagaaccctgctggacaggt
agcctgaaacaaaaggacataagctatctacagtggtatagcaaagaaga
tagttttaaatatagatagaataaactccaatcctcctttttctctggtt
tgcataacaaagagatgagaggaaaagagaggagaagagaggagaagaga
gaagagaggagaagagaggagaagagaggagaagagaggagaagagagga
gaagagaggagaagagagtagaagagaggagaagagaggagaagagagga
gaagagaggagaagacaggagaagagaggagatgagaggagaagagagga
gaatagtttataagagaggagaatctaggcctcgagaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_110666056_110667288
seq2: B6Ng01-333H24.b_46_1258 (reverse)

seq1  GAATAAAGGGTAG--CCGGGTTATTGAATGAGCCAGCATAGTATGCATGC  48
      |||||| ||||||  |||||||| || ||||| |||||||||||||||||
seq2  GAATAAGGGGTAGGCCCGGGTTA-TGGATGAG-CAGCATAGTATGCATGC  48

seq1  ACCACTTCATTTCATTTCTTTTCATTTCACATATCTCCAGTAATCAAACT  98
      ||   |||| ||||  || ||||| ||||||  |||||||| ||||||||
seq2  AC--ATTCA-TTCA--TCCTTTCA-TTCACAATTCTCCAGT-ATCAAACT  91

seq1  GCTTTTGCCTATCACTCTGTACAGTCAGGGAGAGTTGAC-AGAGGTGATT  147
      |||||   |||||||||||||||||||||  ||||  || |||||||| |
seq2  GCTTT--GCTATCACTCTGTACAGTCAGGAGGAGTGAACAAGAGGTGA-T  138

seq1  CTCTTACTCAACTTTTTCTAAGATGTGGGGTTTTCTTGGCATTTTTCTCC  197
      ||| ||||||   ||||||||||||||||||||   |||||||| |   |
seq2  CTC-TACTCA--CTTTTCTAAGATGTGGGGTTT--CTGGCATTTCT---C  180

seq1  TATCATGTGTTTCATATTTCTATATGCCTTGCATTTTCACCCATAATCCC  247
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATCATGTGTTTCATATTTCTATATGCCTTGCA-TTTCACCCATAATCCC  229

seq1  TTGCATGCACTTGGTGCGGTGACAAGTCCTCAGATAAGGGGGCTTGCACA  297
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  -TGCATGCAC-TGGTGCGGTGACAAGTCCTCAGATAAGGGGGCTTGCACA  277

seq1  CTGTCCCACAGAAGCCGAAGATTTCTTTCCTCTCTCACTTTCTCTGGAGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCACAGAAGCCGAAGATTTCTTTCCTCTCTCACTTTCTCTGGAGT  327

seq1  AGCTAAGTCTCCTAGCAGATAATTTTTATTCTGATTACTTTTATCAAAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGTCTCCTAGCAGATAATTTTTATTCTGATTACTTTTATCAAAAC  377

seq1  AATGGCCCATGGCTTGGGGAAAGCTGAAATTCTTTTTCCTTCCCTAATGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCCATGGCTTGGGGAAAGCTGAAATTCTTTTTCCTTCCCTAATGT  427

seq1  TAGATGGATATTGCTCTCTGTGGGACTAGTTGAGGTACAAGTATGATACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGGATATTGCTCTCTGTGGGACTAGTTGAGGTACAAGTATGATACT  477

seq1  GCTGCTCTGCTTATAGTCTTCATCTGCTCCACCAGTAGAGAACACCAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTCTGCTTATAGTCTTCATCTGCTCCACCAGTAGAGAACACCAAGA  527

seq1  CAGAACTGACAGTTGGCTATAGACCCTCTGTTATCTAGGGCTTGCAAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGACAGTTGGCTATAGACCCTCTGTTATCTAGGGCTTGCAAACT  577

seq1  TTTAGAAGCAAGTATCAGTTCATAAGGTGCTAATATTCTAACTGCTGTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGCAAGTATCAGTTCATAAGGTGCTAATATTCTAACTGCTGTGG  627

seq1  CTTTTAGGAATTCTCTAACATTTCAGTTCTTTGTTCTAACCACTTTTATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGGAATTCTCTAACATTTCAGTTCTTTGTTCTAACCACTTTTATG  677

seq1  ACCACCCCTTTTAAAAGAGTACAAAAATCATATCTTCTGTCCCTATTCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCCTTTTAAAAGAGTACAAAAATCATATCTTCTGTCCCTATTCAG  727

seq1  GTATATTTATTGCCTTTATAAAACACCTTCACATGTTACCTGATGATCTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTATTGCCTTTATAAAACACCTTCACATGTTACCTGATGATCTC  777

seq1  AGAGCATTAGAAACTCAGAGTTAAGGTTTGTGTAGACTATCTGAGTCTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTAGAAACTCAGAGTTAAGGTTTGTGTAGACTATCTGAGTCTTT  827

seq1  AAATTAGGAACAATATTTACTTGTTATTTTTCACATATTAAGCCACTTAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGAACAATATTTACTTGTTATTTTTCACATATTAAGCCACTTAT  877

seq1  AGTTAGAAAAAACTTGGAATTATTGCAAAAATTTAACTGACTATAAAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAAAAACTTGGAATTATTGCAAAAATTTAACTGACTATAAAGAA  927

seq1  CAGTGAAGAATTTTCAAAGTGTAACTCAAGGATTAACTCTTTTGTAAAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGAATTTTCAAAGTGTAACTCAAGGATTAACTCTTTTGTAAAAC  977

seq1  TCAGCATAGTTATTAAACATTAATTGGATTTAACTCTAAAATAATATGAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATAGTTATTAAACATTAATTGGATTTAACTCTAAAATAATATGAA  1027

seq1  AATTTTATGCTTAATAAACAATATTATTAAGATTGAGAAAGGTTTTTCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATGCTTAATAAACAATATTATTAAGATTGAGAAAGGTTTTTCTG  1077

seq1  ACATTAAAAGTAAACTTTTTTCAAATTATAACAATTATTGATGATTTCAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAAAGTAAACTTTTTTCAAATTATAACAATTATTGATGATTTCAT  1127

seq1  GACTAGAATAAATTCTGATGTATATAATTCCCTTTTTTGAATATTTACCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGAATAAATTCTGATGTATATAATTCCCTTTTTTGAATATTTACCT  1177

seq1  GAGCTTAAAATGAAGGTTTATGATGTGAAAGAATTC  1233
      ||||||||||||||||||||||||||||||||||||
seq2  GAGCTTAAAATGAAGGTTTATGATGTGAAAGAATTC  1213


seq1: chr3_110589355_110589737
seq2: B6Ng01-333H24.g_66_463

seq1  GAATTCAAGCAGAGAAGAAGCAGTTGCTAGCAATTTGAGAACCCTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAGAGAAGAAGCAGTTGCTAGCAATTTGAGAACCCTGCTGG  50

seq1  ACAGGTAGCCTGAAACAAAAGGACATAAGCTATCTACAGTGGTATAGCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGCCTGAAACAAAAGGACATAAGCTATCTACAGTGGTATAGCAA  100

seq1  AGAAGATAGTTTTAAATATAGATAGAATAAACTCCAATCCTCCTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATAGTTTTAAATATAGATAGAATAAACTCCAATCCTCCTTTTTCT  150

seq1  CTGGTTTGCATAACAAAGAGATGAGAGGAAAAGAGAGGAGAAGAGAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTGCATAACAAAGAGATGAGAGGAAAAGAGAGGAGAAGAGAGGAG  200

seq1  AAGAGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAG  250

seq1  AGAGGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAG  300
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAGGAGAAGAGAGGAGAAGAGAGTAGAAGAGAGGAGAAGAGAGGAGAAG  300

seq1  AGAGGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAGAGAGGAGAAG  350
      ||||||||||||||||||||| |||||||||||||||| |||||||||||
seq2  AGAGGAGAAGAGAGGAGAAGACAGGAGAAGAGAGGAGATGAGAGGAGAAG  350

seq1  AGAGGAG----------AAGAGAGGAGAAGAGAG-----GAGAAGAGA  383
      |||||||          ||||||||||||   ||     |||||||||
seq2  AGAGGAGAATAGTTTATAAGAGAGGAGAATCTAGGCCTCGAGAAGAGA  398


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