BAC Information

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BAC

Clone NameB6Ng01-333J19
Chromosome3 (Build37)
Map Location 93,628,936 - 93,773,471
singlet/doubletdoublet
Overlap geneTdpoz3, EG668341, LOC668344, EG668346, Tdpoz5
Upstream geneKprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4
Downstream geneEG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333J19.bB6Ng01-333J19.g
ACCGA119361GA119362
length6681,093
definitionB6Ng01-333J19.b B6Ng01-333J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,628,936 - 93,629,557)(93,772,366 - 93,773,471)
sequence
gaagccttaaagagtgggaggcatctcagtaaggatcctgggagtggctg
caaaggcatatcctttctgggtgagactggcagcatcctgaggataagtt
aaataaaacaacaggagggatagatcaccaagacctcaagtagtcaattg
gggtctgatctcaggccagtacctgagtgggtagagatgtgaagaatggt
ttacccaggcctggggtttctcagcagtgagaaaagaaaaagacacagag
gagagaggaaatctcactcaagggaaaatgtcctaaaatgaggactcagc
aaaaaggacaatcataaagactgggactgtctccatccacaatgatacta
cagggtggctgggagttcaacagccctcccttggaaccaggagatattta
cactgaccagtgtgggagagggagcttacccatttgctggtgtttggatg
gagagttctagtgagtggtgtgttggatggaaacttcatgtggcaatgaa
tatgttaacctgcaatttttcaaatccgagtcacaacatcagtgttagaa
aatgaaatccaggatatttttgttttagccaggtatggtgaggtagggag
tggtactgtggtgggtacatgctgaggcaccccttcccccctgaagagat
attgacatgattagtata
gaattcttgaaaaactaaaaagatccttttatttttctttaatataagta
actagaaaaggacagtgccaagataaaaaagctaaattagattaaaaatt
aaaagcaaggccaagcatgatgacctttaattccagcactcgggaggcag
aggaaggtaaatctctgagtttgaggccagcctgatctagagaatgagtt
cctggacagctggaccctgtcttgctcatcttctgatcaagccagaggag
agcatggttccttgacagcactctgcaatcaaaggtggcattatcctgtg
ctggtggacagtgtgccataaagtggctgatcttgatgggctcatccagg
tagacatgacgctcctgaaatgggtgccactttaggcaacacgtgaagat
ggctgaggctgaccgtgtcggggggttctggaccagggacaatgaggagc
tcctccgggtttgaatgcacttcacaagccgacacccccattcccacaac
atttttaaatcaaacttcactttatctaagcatagatatcaacaactctt
caattgggcaggaagaagccagcacaagtcccattaacttttttaaaata
cagaggctccttgaccaaaaaaatgtcttcacctagcagctttcagtcca
tcttccctaggatgaaaaggctcaaacattgtgcagcttcgaactaataa
actcctggaagagagtttggggactggaggcttcccagcagttaagtcac
atatcagtcttgtgttttgcttgacaacccggcctgttctctgcttctcc
ccttccacattagaaaaggtacagcactgaagcatgaagagggttgactc
tgagaagccaggaaggtacttgagggcccaaggaagagaaacagaggact
gtgggcagccaccactgggcctcagggtgagagagatgcagaacagagga
gagggctagagtcagcagcctagatccattgcccagtgtgcaagcttgcc
caggaagtgtcagggttcaaggcccacatgagctcaggctgtgatctggc
tgtggcatgggaggcctgcctggacaagggcatctctggttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93628936_93629557
seq2: B6Ng01-333J19.b_96_719

seq1  TGGCTGCAAAGGCATATCCTTTCTGGGTGAGACTGGCAGCATCCTGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCAAAGGCATATCCTTTCTGGGTGAGACTGGCAGCATCCTGAGGA  50

seq1  TAAGTTAAATAAAACAACAGGAGGGATAGATCACCAAGACCTCAAGTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAATAAAACAACAGGAGGGATAGATCACCAAGACCTCAAGTAGT  100

seq1  CAATTGGGGTCTGATCTCAGGCCAGTACCTGAGTGGGTAGAGATGTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGGGTCTGATCTCAGGCCAGTACCTGAGTGGGTAGAGATGTGAAG  150

seq1  AATGGTTTACCCAGGCCTGGGGTTTCTCAGCAGTGAGAAAAGAAAAAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTACCCAGGCCTGGGGTTTCTCAGCAGTGAGAAAAGAAAAAGAC  200

seq1  ACAGAGGAGAGAGGAAATCTCACTCAAGGGAAAATGTCCTAAAATGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAGAGAGGAAATCTCACTCAAGGGAAAATGTCCTAAAATGAGGA  250

seq1  CTCAGCAAAAAGGACAATCATAAAGACTGGGACTGTCTCCATCCACAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAAAAGGACAATCATAAAGACTGGGACTGTCTCCATCCACAATG  300

seq1  ATACTACAGGGTGGCTGGGAGTTCAACAGCCCTCCCTTGGAACCAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACAGGGTGGCTGGGAGTTCAACAGCCCTCCCTTGGAACCAGGAGA  350

seq1  TATTTACACTGACCAGTGTGGGAGAGGGAGCTTACCCATTTGCTGGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACACTGACCAGTGTGGGAGAGGGAGCTTACCCATTTGCTGGTGTT  400

seq1  TGGATGGAGAGTTCTAGTGAGTGGTGTGTTGGATGGAAACTTCATGTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGGAGAGTTCTAGTGAGTGGTGTGTTGGATGGAAACTTCATGTGGC  450

seq1  AATGAATATGTTAACCTGCAATTTTTCAAATCCGAGTCACAACATCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATGTTAACCTGCAATTTTTCAAATCCGAGTCACAACATCAGTG  500

seq1  TTAGAAAATGAAATCCAGGATATTTTTGTTTTAGCCAGGTATGGTGAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAATGAAATCCAGGATATTTTTGTTTTAGCCAGGTATGGTGAGGT  550

seq1  AGGGAGTGGTACTGTGGTGGGTACATGCTGAGGCATCCCTT-CCCCCTGA  599
      ||||||||||||||||||||||||||||||||||| ||||| ||||||||
seq2  AGGGAGTGGTACTGTGGTGGGTACATGCTGAGGCACCCCTTCCCCCCTGA  600

seq1  AGAGATA-TGACAGGATTAGTATA  622
      ||||||| ||||| ||||||||||
seq2  AGAGATATTGACATGATTAGTATA  624

seq1: chr3_93772366_93773471
seq2: B6Ng01-333J19.g_65_1157 (reverse)

seq1  GCAACCCAGAGATTGCCCTTGTCCAGGCAGCCCTCCCATGCCCACAGCCC  50
      |||| ||||||| ||||||||||||||||| ||||||||| |||||| ||
seq2  GCAA-CCAGAGA-TGCCCTTGTCCAGGCAGGCCTCCCATG-CCACAG-CC  46

seq1  AGATCACAGCCTGGGCTCATGTGGGCCTTGAACCCCTGACAC-TCCTGGG  99
      ||||||||||||| |||||||||||||||||| ||||||||| |||||||
seq2  AGATCACAGCCTGAGCTCATGTGGGCCTTGAA-CCCTGACACTTCCTGGG  95

seq1  CAGCCTTGGCACACCTGGGCAATGGATCTAGGCCTGCTGACCTTCTAGCC  149
      ||  ||| ||||| |||||||||||||||||| ||||||||  |||||||
seq2  CAAGCTT-GCACA-CTGGGCAATGGATCTAGG-CTGCTGAC--TCTAGCC  140

seq1  CTCCTCCTCTGTTCCTGCATCTCTTCTCACCCCTGAGGCCCAGTGGTGGC  199
      || |||||||||| ||||||||| ||||| ||||||||||||||||||||
seq2  CT-CTCCTCTGTT-CTGCATCTC-TCTCA-CCCTGAGGCCCAGTGGTGGC  186

seq1  TGCCCACAGTCCTCTGTTTCTCTTCCTTGGGCCCTCAAGTACCTTCCTGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACAGTCCTCTGTTTCTCTTCCTTGGGCCCTCAAGTACCTTCCTGG  236

seq1  CTTCTCAGAGTCAACCCTCTTCATGCTTCAGTGCTGTACCTTTTCTAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAGAGTCAACCCTCTTCATGCTTCAGTGCTGTACCTTTTCTAATG  286

seq1  TGGAAGGGGAGAAGCAGAGAACAGGCCGGGTTGTCAAGCAAAACACAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGGAGAAGCAGAGAACAGGCCGGGTTGTCAAGCAAAACACAAGA  336

seq1  CTGATATGTGACTTAACTGCTGGGAAGCCTCCAGTCCCCAAACTCTCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGTGACTTAACTGCTGGGAAGCCTCCAGTCCCCAAACTCTCTTC  386

seq1  CAGGAGTTTATTAGTTCGAAGCTGCACAATGTTTGAGCCTTTTCATCCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTTATTAGTTCGAAGCTGCACAATGTTTGAGCCTTTTCATCCTA  436

seq1  GGGAAGATGGACTGAAAGCTGCTAGGTGAAGACATTTTTTTGGTCAAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGATGGACTGAAAGCTGCTAGGTGAAGACATTTTTTTGGTCAAGGA  486

seq1  GCCTCTGTATTTTAAAAAAGTTAATGGGACTTGTGCTGGCTTCTTCCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTATTTTAAAAAAGTTAATGGGACTTGTGCTGGCTTCTTCCTGC  536

seq1  CCAATTGAAGAGTTGTTGATATCTATGCTTAGATAAAGTGAAGTTTGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTGAAGAGTTGTTGATATCTATGCTTAGATAAAGTGAAGTTTGATT  586

seq1  TAAAAATGTTGTGGGAATGGGGGTGTCGGCTTGTGAAGTGCATTCAAACC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTTGTGGGAATGGGGGTGTCGGCTTGTGAAGTGCATTCAAACC  636

seq1  CGGAGGAGCTCCTCATTGTCCCTGGTCCAGAACCCCCCGACACGGTCAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGAGCTCCTCATTGTCCCTGGTCCAGAACCCCCCGACACGGTCAGC  686

seq1  CTCAGCCATCTTCACGTGTTGCCTAAAGTGGCACCCATTTCAGGAGCGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCATCTTCACGTGTTGCCTAAAGTGGCACCCATTTCAGGAGCGTC  736

seq1  ATGTCTACCTGGATGAGCCCATCAAGATCAGCCACTTTATGGCACACTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACCTGGATGAGCCCATCAAGATCAGCCACTTTATGGCACACTGT  786

seq1  CCACCAGCACAGGATAATGCCACCTTTGATTGCAGAGTGCTGTCAAGGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCACAGGATAATGCCACCTTTGATTGCAGAGTGCTGTCAAGGAA  836

seq1  CCATGCTCTCCTCTGGCTTGATCAGAAGATGAGCAAGACAGGGTCCAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTCTCCTCTGGCTTGATCAGAAGATGAGCAAGACAGGGTCCAGCT  886

seq1  GTCCAGGAACTCATTCTCTAGATCAGGCTGGCCTCAAACTCAGAGATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAACTCATTCTCTAGATCAGGCTGGCCTCAAACTCAGAGATTTA  936

seq1  CCTTCCTCTGCCTCCCGAGTGCTGGAATTAAAGGTCATCATGCTTGGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTCTGCCTCCCGAGTGCTGGAATTAAAGGTCATCATGCTTGGCCT  986

seq1  TGCTTTTAATTTTTAATCTAATTTAGCTTTTTTATCTTGGCACTGTCCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAATTTTTAATCTAATTTAGCTTTTTTATCTTGGCACTGTCCTT  1036

seq1  TTCTAGTTACTTATATTAAAGAAAAATAAAAGGATCTTTTTAGTTTTTCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTACTTATATTAAAGAAAAATAAAAGGATCTTTTTAGTTTTTCA  1086

seq1  AGAATTC  1106
      |||||||
seq2  AGAATTC  1093