BAC Information

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BAC

Clone NameB6Ng01-333N17
Chromosome3 (Build37)
Map Location 49,510,539 - 49,511,763
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039404, EG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779
Downstream genePcdh18, LOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333N17.bB6Ng01-333N17.g
ACCGA119513GA119514
length1,1571,199
definitionB6Ng01-333N17.b B6Ng01-333N17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcatttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttacgtctggcatggtgagtccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagttttatcatac
agatctttcactttccttagttagagtcacgccaagatattttatattat
ttgtgactattgagaagggtgttgtttcccttaattctttctcagctgtt
atttctttgtataggagaaaggccattgactgtttgagtttattttaata
tccagctactcaccgaagctgtttacacgttaggagtcctctggtagatt
tttagggtacttaattatactatccatatcatctggcagagggtatattt
gacttcc
gaattcttcattctctgtcaatattccagaccccaaagagcacgcactgc
ctcctactctgctaacagcctttcccaattctattcattcactaacagtg
ttgaacaaatagagcagccttctttcttatgtatatgggcctgagctcat
ttcaaaagcaggttacttggctcaggtctgaaagacgtctatgatctata
gtactgctgtataattacttcactgcatagagaagtttttttaatatttt
tctataaagttatcacctcattaagctaggtatttatgccttttctttcc
atttaatcccttttattagactactcaatttctaggagaaatattatcat
ctgacttgaaaatacatatgtattcctcaggctgttttatttcttaactt
tgcattatatttttaatatgctctgctgaattatgttaccctataacaac
tatagaaagctcttctttaaggggtgttattaggaagttttcttagtttc
tgctttaagttggcccgagagatacattttccaagtcctgtctgaagcaa
acaatattattagaacaattttctaatctccttttttttcctaaaggtta
atagtctagtttctgaaataaccacttagaaaatgttagctctatgctga
tttagattgttttctgaaaatctgtcttgaaataccctcttgccattttc
acagtatgcatgaaagaaagaaaaaacaaacaaacaaacaaacaacaaga
gaacaaacccaaaactaggattcctgtcctggttcttggaagtgagaaga
aaagctcttacgagattcccaaagcagccaaggcacattagtcttagtgc
tcggttcacagacatgtggcccttccttccaactgaagaaaatgaagaca
attctccatttataaagtccacatttctgcgtcaatacttatcctggaaa
aaaataaacagtttagaaaacaaaggcatgtgaagagtaatgtgtggttc
aaggcttgaatattgtgatttggtctatgcttgcattatagttgccaaat
tgtatgagaatctccgtgtgagatgggagaaccttgaaggtctcagctca
gtggcctttgaatgtaaataaacctgctagccagtaatgcagccagagac
aagtcgaatcttcagattccgtgggggatctggcaggtaagccaaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49510539_49511763
seq2: B6Ng01-333N17.g_64_1262

seq1  GAATTCTTCATTCTCTGTCAATATTCCAGACCCCAAAGAGCACGCACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTCTCTGTCAATATTCCAGACCCCAAAGAGCACGCACTGC  50

seq1  CTCCTACTCTGCTAACAGCCTTTCCCAATTCTATTCATTCACTAACAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACTCTGCTAACAGCCTTTCCCAATTCTATTCATTCACTAACAGTG  100

seq1  TTGAACAAATAGAGCAGCCTTCTTTCTTATGTATATGGGCCTGAGCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAATAGAGCAGCCTTCTTTCTTATGTATATGGGCCTGAGCTCAT  150

seq1  TTCAAAAGCAGGTTACTTGGCTCAGGTCTGAAAGACGTCTATGATCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAGCAGGTTACTTGGCTCAGGTCTGAAAGACGTCTATGATCTATA  200

seq1  GTACTGCTGTATAATTACTTCACTGCATAGAGAAGTTTTTTTAATATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGCTGTATAATTACTTCACTGCATAGAGAAGTTTTTTTAATATTTT  250

seq1  TCTATAAAGTTATCACCTCATTAAGCTAGGTATTTATGCCTTTTCTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAAGTTATCACCTCATTAAGCTAGGTATTTATGCCTTTTCTTTCC  300

seq1  ATTTAATCCCTTTTATTAGACTACTCAATTTCTAGGAGAAATATTATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATCCCTTTTATTAGACTACTCAATTTCTAGGAGAAATATTATCAT  350

seq1  CTGACTTGAAAATACATATGTATTCCTCAGGCTGTTTTATTTCTTAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTGAAAATACATATGTATTCCTCAGGCTGTTTTATTTCTTAACTT  400

seq1  TGCATTATATTTTTAATATGCTCTGCTGAATTATGTTACCCTATAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATATTTTTAATATGCTCTGCTGAATTATGTTACCCTATAACAAC  450

seq1  TATAGAAAGCTCTTCTTTAAGGGGTGTTATTAGGAAGTTTTCTTAGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAGCTCTTCTTTAAGGGGTGTTATTAGGAAGTTTTCTTAGTTTC  500

seq1  TGCTTTAAGTTGGCCCGAGAGATACATTTTCCAAGTCCTGTCTGAAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAGTTGGCCCGAGAGATACATTTTCCAAGTCCTGTCTGAAGCAA  550

seq1  ACAATATTATTAGAACAATTTTCTAATCTCCTTTTTTTTCCTAAAGGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATTATTAGAACAATTTTCTAATCTCCTTTTTTTTCCTAAAGGTTA  600

seq1  ATAGTCTAGTTTCTGAAATAACCACTTAGAAAATGTTAGCTCTATGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTAGTTTCTGAAATAACCACTTAGAAAATGTTAGCTCTATGCTGA  650

seq1  TTTAGATTGTTTTCTGAAAATCTGTCTTGAAATACCCTCTTGCCATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTGTTTTCTGAAAATCTGTCTTGAAATACCCTCTTGCCATTTTC  700

seq1  ACAGTATGCATGAAAGAAAGAAAAAACAAACAAACAAACAAACAACAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATGCATGAAAGAAAGAAAAAACAAACAAACAAACAAACAACAAGA  750

seq1  GAACAAACCCAAAACTAGGATTCCTGTCCTGGTTCTTGGAAGTGAGAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACCCAAAACTAGGATTCCTGTCCTGGTTCTTGGAAGTGAGAAGA  800

seq1  AAAGCTCTTACGAGATTCCCAAAGCAGCCAAGGCACATTAGTCTTAGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTACGAGATTCCCAAAGCAGCCAAGGCACATTAGTCTTAGTGC  850

seq1  TCGGTTCACAGACATGTGGCCCTTCCTTCCAACTGAAGAAAATGAAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTCACAGACATGTGGCCCTTCCTTCCAACTGAAGAAAATGAAGACA  900

seq1  ATTCTCCATTTATAAAGTCCACATTTCTGCGTCAATACTTATCCTGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCATTTATAAAGTCCACATTTCTGCGTCAATACTTATCCTGGAAA  950

seq1  AAAATAAACAGTTTAGAAAACAAAGGCATGTGGAAGAGGTAATGTGTGGT  1000
      ||||||||||||||||||||||||||||||| ||||| ||||||||||||
seq2  AAAATAAACAGTTTAGAAAACAAAGGCATGT-GAAGA-GTAATGTGTGGT  998

seq1  TCAAGGCTTGAATATTGTGGATTTGGTCTAATGCTTGCATTATAGGTTGC  1050
      |||||||||||||||||| |||||||||| |||||||||||||| |||||
seq2  TCAAGGCTTGAATATTGT-GATTTGGTCT-ATGCTTGCATTATA-GTTGC  1045

seq1  CAAAATTGTATGAGAATCTCCCGTGTGAGATGGGAG-ACCCTGAGGGTCT  1099
      | ||||||||||||||||| |||||||||||||||| ||| ||| |||||
seq2  C-AAATTGTATGAGAATCT-CCGTGTGAGATGGGAGAACCTTGAAGGTCT  1093

seq1  CAGCCTCCAGTTGGCTTTGATTGGTAAATAAAGCTGCTAGCAAGTTAATG  1149
      ||||   |||| | |||||| | ||||||||| |||||||| || |||||
seq2  CAGC--TCAGTGGCCTTTGAAT-GTAAATAAACCTGCTAGCCAG-TAATG  1139

seq1  GCCAGGCAGGAAGACAGAGTCAGAACTTTCAGGATTCTCCGGGGTGGGGG  1199
        ||| |||  ||||| |||| |||  |||| |||||      |||||||
seq2  --CAGCCAG--AGACA-AGTC-GAATCTTCA-GATTC-----CGTGGGGG  1177

seq1  AGTCGGGGCAGGGAGAAGCCAAAGGG  1225
      | ||  ||||||   |||||||||||
seq2  A-TC-TGGCAGG--TAAGCCAAAGGG  1199