BAC Information

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BAC

Clone NameB6Ng01-334B04
Chromosome3 (Build37)
Map Location 5,714,753 - 5,886,791
singlet/doubletdoublet
Overlap geneEG667759, LOC100041165
Upstream geneLOC620283, Zfhx4, Pxmp3, EG620382
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334B04.bB6Ng01-334B04.g
ACCGA119667GA119668
length1,226824
definitionB6Ng01-334B04.b B6Ng01-334B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,714,753 - 5,715,990)(5,886,210 - 5,886,791)
sequence
gaattctttgagaaccacataccaatgtctggtctgtttccagggccatt
ctgggttccatatgtgttagtgatagcagattttacttcagaacaagagt
tctatgactcacaaaatgatattctgtttaatgataaactaagaaaacta
cttttgtgcaagtttgaatagttacatacctttaacagtatttcaattaa
ccagactatttttcatggtatagcttttaattaactaaaaatataaggta
gctttcccctttcttccaaaattgcaaacactgtagttttaaggacaatc
tgatctagttggatgctcattaccttcagtatctgatttaggcattttga
cctttatctagtggacacttaggactccagtttattcttcatgttccttc
ccctaccttcagtaattattttctattatattcttcagaaagtgagatgc
tactttgtttgcggaatccatctttctgcacttatgatctggctagtttc
tttcactgccacttgagttcattcacaaaggcaccgtggagttacaaagc
tccagatcagctctcatgtatctatctgtgtcctgtttccaccatgctat
cttgggcacatactttgtgcatcctaaactgaacaatctaaagtgtggac
tcactactagcccaacactcttcctgagttttctttattttctcttgctg
gcaacactgcacagtgatctaaattcaaaaccttgactttatcttttgtc
cttcttagttacttagagttcatctcctaactccccactggcaatcataa
tgcatacgaaaggccatcatcgtcttgaaatagactctgttggctcgagt
cctagtcatctgtcctcttacagaaacaaggaactttacatgtgatcccc
aagaacagtgattttatctacagtccacccatcctagctattatttgagt
gttttattcttaaacacacttaattttcatgtgtttaggaaattgtatct
tttatctgggtatcctaggttttgggctaatatccacttatcagtgagta
catatggtgtggagttccttgtggaatggtgtaacctcacctcagatgat
gccctcccaggtccatcatttgctaggatttcataatcaatggtttaata
gctgagagtactcccattggtaagtgtaccacattcctgattcaatccgt
gtgagggcatctaggtctctccagct

gaattcttttagttattctaaattttagttatacagatctacatttatat
ttcatttacagaaatttaaattatatatattcatatactctacttgaata
ttttgattgaaaattaattggtttttatttttaggttaagagaaaatttt
attttgaaaataaaatttggagaaaaaagaaattatttttaaactactaa
ccacttttcagatttgtatatgaattagacaatatctcagtatatttaaa
attcttaaaaacctagaagctggaataaacataaaagtatgacatttttc
tttaaagcatttcagcagtatatttatagcaattataaggtattttgttt
tggaaaagaaatcattatatcagtgtgctaactaattttaagtcaacttg
gtacaagctggagtcattttggaagcaggaactgcaattgaaaaaatttc
tctcccatattgacttgttggaaagtctctggtgccttctctttgttgat
gcttacatagatgttcactttgggtagttctgggagctataaaaaagtag
gataaacaagacagcaagcagcactccaccatggcccctgtctcagttct
tgcctccagtttcctgcactgggttcttgcctagtttccccagatgatga
acctataagcagttagttgaagaaactctttctttccaggttactttggt
caacatgttttgctacagcaatagaattcctgaataagacagttaatttt
tcataaatatatgaccagaaaaaatatttttaagaagtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5714753_5715990
seq2: B6Ng01-334B04.b_49_1274

seq1  GAATTCTTTGAGAACCACATACCAATGTCTGGTCTGTTTCCAGGGCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAACCACATACCAATGTCTGGTCTGTTTCCAGGGCCATT  50

seq1  CTGGGTTCCATATGTGTTAGTGATAGCAGATTTTACTTCAGAACAAGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTCCATATGTGTTAGTGATAGCAGATTTTACTTCAGAACAAGAGT  100

seq1  TCTATGACTCACAAAATGATATTCTGTTTAATGATAAACTAAGAAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGACTCACAAAATGATATTCTGTTTAATGATAAACTAAGAAAACTA  150

seq1  CTTTTGTGCAAGTTTGAATAGTTACATACCTTTAACAGTATTTCAATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTGCAAGTTTGAATAGTTACATACCTTTAACAGTATTTCAATTAA  200

seq1  CCAGACTATTTTTCATGGTATAGCTTTTAATTAACTAAAAATATAAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTATTTTTCATGGTATAGCTTTTAATTAACTAAAAATATAAGGTA  250

seq1  GCTTTCCCCTTTCTTCCAAAATTGCAAACACTGTAGTTTTAAGGACAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCCCTTTCTTCCAAAATTGCAAACACTGTAGTTTTAAGGACAATC  300

seq1  TGATCTAGTTGGATGCTCATTACCTTCAGTATCTGATTTAGGCATTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGTTGGATGCTCATTACCTTCAGTATCTGATTTAGGCATTTTGA  350

seq1  CCTTTATCTAGTGGACACTTAGGACTCCAGTTTATTCTTCATGTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCTAGTGGACACTTAGGACTCCAGTTTATTCTTCATGTTCCTTC  400

seq1  CCCTACCTTCAGTAATTATTTTCTATTATATTCTTCAGAAAGTGAGATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACCTTCAGTAATTATTTTCTATTATATTCTTCAGAAAGTGAGATGC  450

seq1  TACTTTGTTTGCGGAATCCATCTTTCTGCACTTATGATCTGGCTAGTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGTTTGCGGAATCCATCTTTCTGCACTTATGATCTGGCTAGTTTC  500

seq1  TTTCACTGCCACTTGAGTTCATTCACAAAGGCACCGTGGAGTTACAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGCCACTTGAGTTCATTCACAAAGGCACCGTGGAGTTACAAAGC  550

seq1  TCCAGATCAGCTCTCATGTATCTATCTGTGTCCTGTTTCCACCATGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATCAGCTCTCATGTATCTATCTGTGTCCTGTTTCCACCATGCTAT  600

seq1  CTTGGGCACATACTTTGTGCATCCTAAACTGAACAATCTAAAGTGTGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGCACATACTTTGTGCATCCTAAACTGAACAATCTAAAGTGTGGAC  650

seq1  TCACTACTAGCCCAACACTCTTCCTGAGTTTTCTTTATTTTCTCTTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACTAGCCCAACACTCTTCCTGAGTTTTCTTTATTTTCTCTTGCTG  700

seq1  GCAACACTGCACAGTGATCTAAATTCAAAACCTTGACTTTATCTTTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACACTGCACAGTGATCTAAATTCAAAACCTTGACTTTATCTTTTGTC  750

seq1  CTTCTTAGTTACTTAGAGTTCATCTCCTAACTCCCCACTGGCAATCATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTAGTTACTTAGAGTTCATCTCCTAACTCCCCACTGGCAATCATAA  800

seq1  TGCATACGAAAGGCCATCATCGTCTTGAAATAGACTCTGTTGGCTCGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACGAAAGGCCATCATCGTCTTGAAATAGACTCTGTTGGCTCGAGT  850

seq1  CCTAGTCATCTGTCCTCTTACAGAAACAAGGAACTTTACATGTGATCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCATCTGTCCTCTTACAGAAACAAGGAACTTTACATGTGATCCCC  900

seq1  AAGAACAGTGATTTTATCTACAGTCCACCCATCCTAGCTATTATTTGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAGTGATTTTATCTACAGTCCACCCATCCTAGCTATTATTTGAGT  950

seq1  GTTTTATTCTTAAAACACACTTAATTTTCATGTGTTTAGGAAATTGTATC  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCTT-AAACACACTTAATTTTCATGTGTTTAGGAAATTGTATC  999

seq1  TTTTATCTTGGGTATCCTAGGTTTTGGGCTAATATCCACTTATCAGTGAG  1050
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATC-TGGGTATCCTAGGTTTTGGGCTAATATCCACTTATCAGTGAG  1048

seq1  TACATATTGTGT-GAGTTCCTTTGTGAAT-GTGTTACCTCA-CTCAGGAT  1097
      ||||||| |||| |||||||||   |||| |||| |||||| |||| |||
seq2  TACATATGGTGTGGAGTTCCTTGTGGAATGGTGTAACCTCACCTCA-GAT  1097

seq1  GATGCCCT-CCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCATTG  1146
      |||||||| |||||||||| ||||| |||||| |||||||||  ||| ||
seq2  GATGCCCTCCCAGGTCCAT-CATTT-GCTAGG-ATTTCATAA--TCAATG  1142

seq1  TTTTTAATAGCTGAGTAGTACT-CCATTGTGTAGATGTACCACATTTTCT  1195
        ||||||||||||| |||||| |||||| |||  ||||||||| || ||
seq2  -GTTTAATAGCTGAG-AGTACTCCCATTG-GTAAGTGTACCACA-TTCCT  1188

seq1  GTATCCATTCCTCTGT-TGAGGGGCATCTAGGTTCTTTCCAGCT  1238
      | || || |||   || ||| ||||||||||| ||| |||||||
seq2  G-ATTCAATCC---GTGTGA-GGGCATCTAGG-TCTCTCCAGCT  1226


seq1: chr3_5886210_5886791
seq2: B6Ng01-334B04.g_309_890 (reverse)

seq1  TCACACACACACACACACACACACACACACACACACACTTCTTAAAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACACACACACACACACACACACACACACACACTTCTTAAAAATA  50

seq1  TTTTTTCTGGTCATATATTTATGAAAAATTAACTGTCTTATTCAGGAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTGGTCATATATTTATGAAAAATTAACTGTCTTATTCAGGAATT  100

seq1  CTATTGCTGTAGCAAAACATGTTGACCAAAGTAACCTGGAAAGAAAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTGTAGCAAAACATGTTGACCAAAGTAACCTGGAAAGAAAGAGT  150

seq1  TTCTTCAACTAACTGCTTATAGGTTCATCATCTGGGGAAACTAGGCAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAACTAACTGCTTATAGGTTCATCATCTGGGGAAACTAGGCAAGA  200

seq1  ACCCAGTGCAGGAAACTGGAGGCAAGAACTGAGACAGGGGCCATGGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGCAGGAAACTGGAGGCAAGAACTGAGACAGGGGCCATGGTGGA  250

seq1  GTGCTGCTTGCTGTCTTGTTTATCCTACTTTTTTATAGCTCCCAGAACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTGCTGTCTTGTTTATCCTACTTTTTTATAGCTCCCAGAACTA  300

seq1  CCCAAAGTGAACATCTATGTAAGCATCAACAAAGAGAAGGCACCAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTGAACATCTATGTAAGCATCAACAAAGAGAAGGCACCAGAGAC  350

seq1  TTTCCAACAAGTCAATATGGGAGAGAAATTTTTTCAATTGCAGTTCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACAAGTCAATATGGGAGAGAAATTTTTTCAATTGCAGTTCCTGC  400

seq1  TTCCAAAATGACTCCAGCTTGTACCAAGTTGACTTAAAATTAGTTAGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATGACTCCAGCTTGTACCAAGTTGACTTAAAATTAGTTAGCAC  450

seq1  ACTGATATAATGATTTCTTTTCCAAAACAAAATACCTTATAATTGCTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATATAATGATTTCTTTTCCAAAACAAAATACCTTATAATTGCTATA  500

seq1  AATATACTGCTGAAATGCTTTAAAGAAAAATGTCATACTTTTATGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTGCTGAAATGCTTTAAAGAAAAATGTCATACTTTTATGTTTAT  550

seq1  TCCAGCTTCTAGGTTTTTAAGAATTTTAAATA  582
      ||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCTAGGTTTTTAAGAATTTTAAATA  582


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